Behabadi BF, Polsky A, Jadi M, Schiller J, Mel BW. (2012). Location-dependent excitatory synaptic interactions in pyramidal neuron dendrites. PLoS computational biology. 8 [PubMed]
Bezaire MJ, Raikov I, Burk K, Vyas D, Soltesz I. (2016). Interneuronal mechanisms of hippocampal theta oscillations in a full-scale model of the rodent CA1 circuit. eLife. 5 [PubMed]
Billeh YN et al. (2020). Systematic Integration of Structural and Functional Data into Multi-scale Models of Mouse Primary Visual Cortex. Neuron. 106 [PubMed]
Bonjean M et al. (2012). Interactions between core and matrix thalamocortical projections in human sleep spindle synchronization. The Journal of neuroscience : the official journal of the Society for Neuroscience. 32 [PubMed]
Buzsáki G, Anastassiou CA, Koch C. (2012). The origin of extracellular fields and currents--EEG, ECoG, LFP and spikes. Nature reviews. Neuroscience. 13 [PubMed]
Carlson KD, Nageswaran JM, Dutt N, Krichmar JL. (2014). An efficient automated parameter tuning framework for spiking neural networks. Frontiers in neuroscience. 8 [PubMed]
Constantinople CM, Bruno RM. (2013). Deep cortical layers are activated directly by thalamus. Science (New York, N.Y.). 340 [PubMed]
Crandall SR, Cruikshank SJ, Connors BW. (2015). A corticothalamic switch: controlling the thalamus with dynamic synapses. Neuron. 86 [PubMed]
Cruikshank SJ, Urabe H, Nurmikko AV, Connors BW. (2010). Pathway-specific feedforward circuits between thalamus and neocortex revealed by selective optical stimulation of axons. Neuron. 65 [PubMed]
Dai K et al. (2020). The SONATA data format for efficient description of large-scale network models. PLoS computational biology. 16 [PubMed]
Destexhe A, Babloyantz A, Sejnowski TJ. (1993). Ionic mechanisms for intrinsic slow oscillations in thalamic relay neurons. Biophysical journal. 65 [PubMed]
Destexhe A, Bal T, McCormick DA, Sejnowski TJ. (1996). Ionic mechanisms underlying synchronized oscillations and propagating waves in a model of ferret thalamic slices. Journal of neurophysiology. 76 [PubMed]
Destexhe A, Contreras D, Sejnowski TJ, Steriade M. (1994). A model of spindle rhythmicity in the isolated thalamic reticular nucleus. Journal of neurophysiology. 72 [PubMed]
Dura-Bernal S et al. (2017). Evolutionary algorithm optimization of biological learning parameters in a biomimetic neuroprosthesis. IBM journal of research and development. 61 [PubMed]
Dura-Bernal S et al. (2019). NetPyNE, a tool for data-driven multiscale modeling of brain circuits. eLife. 8 [PubMed]
Ghitza O. (2011). Linking speech perception and neurophysiology: speech decoding guided by cascaded oscillators locked to the input rhythm. Frontiers in psychology. 2 [PubMed]
Giraud AL, Poeppel D. (2012). Cortical oscillations and speech processing: emerging computational principles and operations. Nature neuroscience. 15 [PubMed]
Gleeson P et al. (2019). Open Source Brain: A Collaborative Resource for Visualizing, Analyzing, Simulating, and Developing Standardized Models of Neurons and Circuits. Neuron. 103 [PubMed]
Gratiy SL et al. (2018). BioNet: A Python interface to NEURON for modeling large-scale networks. PloS one. 13 [PubMed]
Harris KD, Shepherd GM. (2015). The neocortical circuit: themes and variations. Nature neuroscience. 18 [PubMed]
Herculano-Houzel S. (2009). The human brain in numbers: a linearly scaled-up primate brain. Frontiers in human neuroscience. 3 [PubMed]
Hromádka T, Deweese MR, Zador AM. (2008). Sparse representation of sounds in the unanesthetized auditory cortex. PLoS biology. 6 [PubMed]
Iavarone E et al. (2019). Experimentally-constrained biophysical models of tonic and burst firing modes in thalamocortical neurons. PLoS computational biology. 15 [PubMed]
Jahr CE, Stevens CF. (1990). Voltage dependence of NMDA-activated macroscopic conductances predicted by single-channel kinetics. The Journal of neuroscience : the official journal of the Society for Neuroscience. 10 [PubMed]
Jensen O, Colgin LL. (2007). Cross-frequency coupling between neuronal oscillations. Trends in cognitive sciences. 11 [PubMed]
Jones EG. (2002). Thalamic circuitry and thalamocortical synchrony. Philosophical transactions of the Royal Society of London. Series B, Biological sciences. 357 [PubMed]
Joris PX, Schreiner CE, Rees A. (2004). Neural processing of amplitude-modulated sounds. Physiological reviews. 84 [PubMed]
Kato HK, Asinof SK, Isaacson JS. (2017). Network-Level Control of Frequency Tuning in Auditory Cortex. Neuron. 95 [PubMed]
Konstantoudaki X, Papoutsi A, Chalkiadaki K, Poirazi P, Sidiropoulou K. (2014). Modulatory effects of inhibition on persistent activity in a cortical microcircuit model. Frontiers in neural circuits. 8 [PubMed]
Krishna BS, Semple MN. (2000). Auditory temporal processing: responses to sinusoidally amplitude-modulated tones in the inferior colliculus. Journal of neurophysiology. 84 [PubMed]
Kudela P, Boatman-Reich D, Beeman D, Anderson WS. (2018). Modeling Neural Adaptation in Auditory Cortex. Frontiers in neural circuits. 12 [PubMed]
Lakatos P et al. (2016). Global dynamics of selective attention and its lapses in primary auditory cortex. Nature neuroscience. 19 [PubMed]
Lakatos P et al. (2013). The spectrotemporal filter mechanism of auditory selective attention. Neuron. 77 [PubMed]
Lefort S, Tomm C, Floyd Sarria JC, Petersen CC. (2009). The excitatory neuronal network of the C2 barrel column in mouse primary somatosensory cortex. Neuron. 61 [PubMed]
Lindén H et al. (2013). LFPy: a tool for biophysical simulation of extracellular potentials generated by detailed model neurons. Frontiers in neuroinformatics. 7 [PubMed]
Lytton WW et al. (2016). Simulation Neurotechnologies for Advancing Brain Research: Parallelizing Large Networks in NEURON. Neural computation. 28 [PubMed]
Magee JC, Cook EP. (2000). Somatic EPSP amplitude is independent of synapse location in hippocampal pyramidal neurons. Nature neuroscience. 3 [PubMed]
Mainen ZF, Sejnowski TJ. (1996). Influence of dendritic structure on firing pattern in model neocortical neurons. Nature. 382 [PubMed]
Markov NT et al. (2011). Weight consistency specifies regularities of macaque cortical networks. Cerebral cortex (New York, N.Y. : 1991). 21 [PubMed]
Markram H et al. (2015). Reconstruction and Simulation of Neocortical Microcircuitry. Cell. 163 [PubMed]
Muller E, Buesing L, Schemmel J, Meier K. (2007). Spike-frequency adapting neural ensembles: beyond mean adaptation and renewal theories. Neural computation. 19 [PubMed]
Myme CI, Sugino K, Turrigiano GG, Nelson SB. (2003). The NMDA-to-AMPA ratio at synapses onto layer 2/3 pyramidal neurons is conserved across prefrontal and visual cortices. Journal of neurophysiology. 90 [PubMed]
Naka A, Adesnik H. (2016). Inhibitory Circuits in Cortical Layer 5. Frontiers in neural circuits. 10 [PubMed]
Nelson PC, Carney LH. (2004). A phenomenological model of peripheral and central neural responses to amplitude-modulated tones. The Journal of the Acoustical Society of America. 116 [PubMed]
Neymotin SA et al. (2020). Human Neocortical Neurosolver (HNN), a new software tool for interpreting the cellular and network origin of human MEG/EEG data eLife. 9 [PubMed]
Neymotin SA et al. (2017). Optimizing computer models of corticospinal neurons to replicate in vitro dynamics. Journal of neurophysiology. 117 [PubMed]
Nicola W, Clopath C. (2017). Supervised learning in spiking neural networks with FORCE training. Nature communications. 8 [PubMed]
Næss S et al. (2021). Biophysically detailed forward modeling of the neural origin of EEG and MEG signals NeuroImage. 225 [PubMed]
Oswald MJ, Tantirigama ML, Sonntag I, Hughes SM, Empson RM. (2013). Diversity of layer 5 projection neurons in the mouse motor cortex. Frontiers in cellular neuroscience. 7 [PubMed]
Pi HJ et al. (2013). Cortical interneurons that specialize in disinhibitory control. Nature. 503 [PubMed]
Povysheva NV et al. (2007). Electrophysiological differences between neurogliaform cells from monkey and rat prefrontal cortex. Journal of neurophysiology. 97 [PubMed]
Prinz AA, Bucher D, Marder E. (2004). Similar network activity from disparate circuit parameters. Nature neuroscience. 7 [PubMed]
Ramaswamy S et al. (2015). The neocortical microcircuit collaboration portal: a resource for rat somatosensory cortex. Frontiers in neural circuits. 9 [PubMed]
Rumsey CC, Abbott LF. (2006). Synaptic democracy in active dendrites. Journal of neurophysiology. 96 [PubMed]
Sakata S, Harris KD. (2009). Laminar structure of spontaneous and sensory-evoked population activity in auditory cortex. Neuron. 64 [PubMed]
Schroeder CE, Lakatos P, Kajikawa Y, Partan S, Puce A. (2008). Neuronal oscillations and visual amplification of speech. Trends in cognitive sciences. 12 [PubMed]
Schroeder CE, Mehta AD, Givre SJ. (1998). A spatiotemporal profile of visual system activation revealed by current source density analysis in the awake macaque. Cerebral cortex (New York, N.Y. : 1991). 8 [PubMed]
Sherman MA et al. (2016). Neural mechanisms of transient neocortical beta rhythms: Converging evidence from humans, computational modeling, monkeys, and mice. Proceedings of the National Academy of Sciences of the United States of America. 113 [PubMed]
Sivagnanam S et al. (2020). Simulating Large-scale Models of Brain Neuronal Circuits using Google Cloud Platform. PEARC20 : Practice and Experience in Advanced Research Computing 2020 : Catch the wave : July 27-31, 2020, Portland, Or Virtual Conference. Practice and Experience in Advanced Research Computing (Conference) (2020 : Online). 2020 [PubMed]
Sivagnanam S et al. (2015). Early experiences in developing and managing the neuroscience gateway. Concurrency and computation : practice & experience. 27 [PubMed]
Spencer KM, Niznikiewicz MA, Nestor PG, Shenton ME, McCarley RW. (2009). Left auditory cortex gamma synchronization and auditory hallucination symptoms in schizophrenia. BMC neuroscience. 10 [PubMed]
Spruston N. (2008). Pyramidal neurons: dendritic structure and synaptic integration. Nature reviews. Neuroscience. 9 [PubMed]
Spruston N, Jaffe DB, Williams SH, Johnston D. (1993). Voltage- and space-clamp errors associated with the measurement of electrotonically remote synaptic events. Journal of neurophysiology. 70 [PubMed]
Sussillo D, Abbott LF. (2009). Generating coherent patterns of activity from chaotic neural networks. Neuron. 63 [PubMed]
Suter BA, Migliore M, Shepherd GM. (2013). Intrinsic electrophysiology of mouse corticospinal neurons: a class-specific triad of spike-related properties. Cerebral cortex (New York, N.Y. : 1991). 23 [PubMed]
Tremblay R, Lee S, Rudy B. (2016). GABAergic Interneurons in the Neocortex: From Cellular Properties to Circuits. Neuron. 91 [PubMed]
Tripathy SJ, Burton SD, Geramita M, Gerkin RC, Urban NN. (2015). Brain-wide analysis of electrophysiological diversity yields novel categorization of mammalian neuron types. Journal of neurophysiology. 113 [PubMed]
Turi GF et al. (2019). Vasoactive Intestinal Polypeptide-Expressing Interneurons in the Hippocampus Support Goal-Oriented Spatial Learning. Neuron. 101 [PubMed]
Vijayan S, Kopell NJ. (2012). Thalamic model of awake alpha oscillations and implications for stimulus processing. Proceedings of the National Academy of Sciences of the United States of America. 109 [PubMed]
Wang X, Lu T, Snider RK, Liang L. (2005). Sustained firing in auditory cortex evoked by preferred stimuli. Nature. 435 [PubMed]
Williams SR, Stuart GJ. (2002). Dependence of EPSP efficacy on synapse location in neocortical pyramidal neurons. Science (New York, N.Y.). 295 [PubMed]
Yamawaki N, Borges K, Suter BA, Harris KD, Shepherd GM. (2014). A genuine layer 4 in motor cortex with prototypical synaptic circuit connectivity. eLife. 3 [PubMed]
Yamawaki N, Shepherd GM. (2015). Synaptic circuit organization of motor corticothalamic neurons. The Journal of neuroscience : the official journal of the Society for Neuroscience. 35 [PubMed]
Zhu JJ, Lytton WW, Xue JT, Uhlrich DJ. (1999). An intrinsic oscillation in interneurons of the rat lateral geniculate nucleus. Journal of neurophysiology. 81 [PubMed]
Zhu JJ, Uhlrich DJ, Lytton WW. (1999). Burst firing in identified rat geniculate interneurons. Neuroscience. 91 [PubMed]
Zhu JJ, Uhlrich DJ, Lytton WW. (1999). Properties of a hyperpolarization-activated cation current in interneurons in the rat lateral geniculate nucleus. Neuroscience. 92 [PubMed]