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• Excitability of PFC Basal Dendrites (Acker and Antic 2009) [Model]

Amatrudo JM et al. (2012). Influence of highly distinctive structural properties on the excitability of pyramidal neurons in monkey visual and prefrontal cortices. The Journal of neuroscience : the official journal of the Society for Neuroscience. 32 [PubMed]

• Rhesus Monkey Layer 3 Pyramidal Neurons: V1 vs PFC (Amatrudo, Weaver et al. 2012) [Model]

Arkhipov A et al. (2018). Visual physiology of the layer 4 cortical circuit in silico. PLoS computational biology. 14 [PubMed]

• Visual physiology of the layer 4 cortical circuit in silico (Arkhipov et al 2018) [Model]

Ascoli GA, Gasparini S, Medinilla V, Migliore M. (2010). Local control of postinhibitory rebound spiking in CA1 pyramidal neuron dendrites. The Journal of neuroscience : the official journal of the Society for Neuroscience. 30 [PubMed]

• CA1 pyramidal neuron: rebound spiking (Ascoli et al.2010) [Model]

Basak R, Narayanan R. (2018). Active dendrites regulate the spatiotemporal spread of signaling microdomains. PLoS computational biology. 14 [PubMed]

• Active dendrites shape signaling microdomains in hippocampal neurons (Basak & Narayanan 2018) [Model]

Behabadi BF, Mel BW. (2014). Mechanisms underlying subunit independence in pyramidal neuron dendrites. Proceedings of the National Academy of Sciences of the United States of America. 111 [PubMed]

• Mechanisms underlying subunit independence in pyramidal neuron dendrites (Behabadi and Mel 2014) [Model]

Beim Graben P, Rodrigues S. (2012). A biophysical observation model for field potentials of networks of leaky integrate-and-fire neurons. Frontiers in computational neuroscience. 6 [PubMed]

• Biophysical model for field potentials of networks of I&F neurons (beim Graben & Serafim 2013) [Model]

Ben-Shalom R et al. (2022). NeuroGPU: Accelerating multi-compartment, biophysically detailed neuron simulations on GPUs Journal of neuroscience methods. 366 [PubMed]

• NeuroGPU example on L5_TTPC1_cADpyr232_1 (Ben-Shalom 2022)(Ramaswamy et al., 2015) [Model]

Bloss EB et al. (2016). Structured Dendritic Inhibition Supports Branch-Selective Integration in CA1 Pyramidal Cells. Neuron. 89 [PubMed]

• CA1 pyramidal neuron synaptic integration (Bloss et al. 2016) [Model]

Branco T, Häusser M. (2011). Synaptic integration gradients in single cortical pyramidal cell dendrites. Neuron. 69 [PubMed]

• Dendritic Discrimination of Temporal Input Sequences (Branco et al. 2010) [Model]

Dan O, Hopp E, Borst A, Segev I. (2018). Non-uniform weighting of local motion inputs underlies dendritic computation in the fly visual system. Scientific reports. 8 [PubMed]

• Vertical system (VS) fly cells with biophysics (Dan et al 2018) [Model]

Dewell RB, Gabbiani F. (2018). Biophysics of object segmentation in a collision-detecting neuron. eLife. 7 [PubMed]

• LGMD with 3D morphology and active dendrites (Dewell & Gabbiani 2018) [Model]

Dewell RB, Gabbiani F. (2019). Active membrane conductances and morphology of a collision detection neuron broaden its impedance profile and improve discrimination of input synchrony. Journal of neurophysiology. 122 [PubMed]

• LGMD impedance (Dewell & Gabbiani 2019) [Model]

Dorman DB, Jędrzejewska-Szmek J, Blackwell KT. (2018). Inhibition enhances spatially-specific calcium encoding of synaptic input patterns in a biologically constrained model. eLife. 7 [PubMed]

• Striatal Spiny Projection Neuron, inhibition enhances spatial specificity (Dorman et al 2018) [Model]

Dura-Bernal S et al. (2023). Data-driven multiscale model of macaque auditory thalamocortical circuits reproduces in vivo dynamics. Cell reports. 42 [PubMed]

• Data-driven multiscale model of macaque auditory thalamocortical circuits reproduces in vivo dynamics (Dura-Bernal et al., 2023) [Model]

Edgerton JR, Hanson JE, Günay C, Jaeger D. (2010). Dendritic sodium channels regulate network integration in globus pallidus neurons: a modeling study. The Journal of neuroscience : the official journal of the Society for Neuroscience. 30 [PubMed]

• Globus pallidus neuron models with differing dendritic Na channel expression (Edgerton et al., 2010) [Model]

Eyal G et al. (2018). Human Cortical Pyramidal Neurons: From Spines to Spikes via Models. Frontiers in cellular neuroscience. 12 [PubMed]

• Comprehensive models of human cortical pyramidal neurons (Eyal et al 2018) [Model]

Galati DF, Hiester BG, Jones KR. (2016). Computer Simulations Support a Morphological Contribution to BDNF Enhancement of Action Potential Generation. Frontiers in cellular neuroscience. 10 [PubMed]

• BDNF morphological contributions to AP enhancement (Galati et al. 2016) [Model]

Galloni AR, Laffere A, Rancz E. (2020). Apical length governs computational diversity of layer 5 pyramidal neurons. eLife. 9 [PubMed]

• Apical Length Governs Computational Diversity of Layer 5 Pyramidal Neurons (Galloni et al 2020) [Model]

Gidon A, Segev I. (2012). Principles governing the operation of synaptic inhibition in dendrites. Neuron. 75 [PubMed]

• Principles governing the operation of synaptic inhibition in dendrites (Gidon & Segev 2012) [Model]

Gulledge AT, Carnevale NT, Stuart GJ. (2012). Electrical advantages of dendritic spines. PloS one. 7 [PubMed]

Górski T et al. (2018). Dendritic sodium spikes endow neurons with inverse firing rate response to correlated synaptic activity. Journal of computational neuroscience. 45 [PubMed]

• Response to correlated synaptic input for HH/IF point neuron vs with dendrite (Górski et al 2018) [Model]

Hawkins J, Ahmad S. (2016). Why Neurons Have Thousands of Synapses, a Theory of Sequence Memory in Neocortex. Frontiers in neural circuits. 10 [PubMed]

• Theory of sequence memory in neocortex (Hawkins & Ahmad 2016) [Model]

Katona G et al. (2011). Roller Coaster Scanning reveals spontaneous triggering of dendritic spikes in CA1 interneurons. Proceedings of the National Academy of Sciences of the United States of America. 108 [PubMed]

• CA1 stratum radiatum interneuron multicompartmental model (Katona et al. 2011) [Model]

Katz Y et al. (2009). Synapse distribution suggests a two-stage model of dendritic integration in CA1 pyramidal neurons. Neuron. 63 [PubMed]

• A two-stage model of dendritic integration in CA1 pyramidal neurons (Katz et al. 2009) [Model]

Kim Y, Hsu CL, Cembrowski MS, Mensh BD, Spruston N. (2015). Dendritic sodium spikes are required for long-term potentiation at distal synapses on hippocampal pyramidal neurons. eLife. 4 [PubMed]

• CA1 pyramidal neuron: Dendritic Na+ spikes are required for LTP at distal synapses (Kim et al 2015) [Model]

Larkum ME, Nevian T, Sandler M, Polsky A, Schiller J. (2009). Synaptic integration in tuft dendrites of layer 5 pyramidal neurons: a new unifying principle. Science (New York, N.Y.). 325 [PubMed]

• Synaptic integration in tuft dendrites of layer 5 pyramidal neurons (Larkum et al. 2009) [Model]

Linaro D, Ocker GK, Doiron B, Giugliano M. (2019). Correlation Transfer by Layer 5 Cortical Neurons Under Recreated Synaptic Inputs In Vitro. The Journal of neuroscience : the official journal of the Society for Neuroscience. 39 [PubMed]

• L5 cortical neurons with recreated synaptic inputs in vitro correlation transfer (Linaro et al 2019) [Model]

Luczak V, Blackwell KT, Abel T, Girault JA, Gervasi N. (2017). Dendritic diameter influences the rate and magnitude of hippocampal cAMP and PKA transients during ß-adrenergic receptor activation. Neurobiology of learning and memory. 138 [PubMed]

• Compartmental differences in cAMP signaling pathways in hippocam. CA1 pyr. cells (Luczak et al 2017) [Model]

Markram H et al. (2015). Reconstruction and Simulation of Neocortical Microcircuitry. Cell. 163 [PubMed]

• The neocortical microcircuit collaboration portal (Markram et al. 2015) [Model]

Menon V et al. (2013). Balanced synaptic impact via distance-dependent synapse distribution and complementary expression of AMPARs and NMDARs in hippocampal dendrites. Neuron. 80 [PubMed]

• Distance-dependent synaptic strength in CA1 pyramidal neurons (Menon et al. 2013) [Model]

Morita K. (2008). Possible role of dendritic compartmentalization in the spatial working memory circuit. The Journal of neuroscience : the official journal of the Society for Neuroscience. 28 [PubMed]

• Working memory circuit with branched dendrites (Morita 2008) [Model]

Mosher CP et al. (2020). Cellular Classes in the Human Brain Revealed In Vivo by Heartbeat-Related Modulation of the Extracellular Action Potential Waveform. Cell reports. 30 [PubMed]

• Cellular classes revealed by heartbeat-related modulation of extracellular APs (Mosher et al 2020) [Model]

Mukunda CL, Narayanan R. (2017). Degeneracy in the regulation of short-term plasticity and synaptic filtering by presynaptic mechanisms. The Journal of physiology. 595 [PubMed]

• Conductance based model for short term plasticity at CA3-CA1 synapses (Mukunda & Narayanan 2017) [Model]

Ness TV, Remme MW, Einevoll GT. (2016). Active subthreshold dendritic conductances shape the local field potential. The Journal of physiology. 594 [PubMed]

Papoutsi A, Kastellakis G, Poirazi P. (2017). Basal tree complexity shapes functional pathways in the prefrontal cortex. Journal of neurophysiology. 118 [PubMed]

• L5 PFC pyramidal neurons (Papoutsi et al. 2017) [Model]

Parekh R, Ascoli GA. (2013). Neuronal morphology goes digital: a research hub for cellular and system neuroscience. Neuron. 77 [PubMed]

• Neuronal morphology goes digital ... (Parekh & Ascoli 2013) [Model]

Park J et al. (2019). Contribution of apical and basal dendrites to orientation encoding in mouse V1 L2/3 pyramidal neurons Nature Communications. 10

• Orientation preference in L23 V1 pyramidal neurons (Park et al 2019) [Model]

Sinha M, Narayanan R. (2015). HCN channels enhance spike phase coherence and regulate the phase of spikes and LFPs in the theta-frequency range. Proceedings of the National Academy of Sciences of the United States of America. 112 [PubMed]

• Subthreshold conductances regulate theta-frequency LFPs and spike phase (Sinha and Narayanan, 2015) [Model]

Smith SL, Smith IT, Branco T, Häusser M. (2013). Dendritic spikes enhance stimulus selectivity in cortical neurons in vivo. Nature. 503 [PubMed]

• Dendritic spikes enhance stimulus selectivity in cortical neurons in vivo (Smith et al 2013) [Model]

Sun Q, Srinivas KV, Sotayo A, Siegelbaum SA. (2014). Dendritic Na+ spikes enable cortical input to drive action potential output from hippocampal CA2 pyramidal neurons. eLife. 3 [PubMed]

Szoboszlay M et al. (2016). Functional Properties of Dendritic Gap Junctions in Cerebellar Golgi Cells. Neuron. 90 [PubMed]

• Functional properties of dendritic gap junctions in Cerebellar Golgi cells (Szoboszlay et al. 2016) [Model]

Wilmes KA, Sprekeler H, Schreiber S. (2016). Inhibition as a Binary Switch for Excitatory Plasticity in Pyramidal Neurons. PLoS computational biology. 12 [PubMed]

• Inhibition of bAPs and Ca2+ spikes in a multi-compartment pyramidal neuron model (Wilmes et al 2016) [Model]

van der Velden L, van Hooft JA, Chameau P. (2012). Altered dendritic complexity affects firing properties of cortical layer 2/3 pyramidal neurons in mice lacking the 5-HT3A receptor. Journal of neurophysiology. 108 [PubMed]

• Altered complexity in layer 2/3 pyramidal neurons (Luuk van der Velden et al. 2012) [Model]