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• CA3 Radiatum/Lacunosum-Moleculare interneuron, Ih (Anderson et al. 2011) [Model]

Baker JL, Olds JL. (2007). Theta phase precession emerges from a hybrid computational model of a CA3 place cell. Cognitive neurodynamics. 1 [PubMed]

• Theta phase precession in a model CA3 place cell (Baker and Olds 2007) [Model]

Berzhanskaya J, Chernyy N, Gluckman BJ, Schiff SJ, Ascoli GA. (2013). Modulation of hippocampal rhythms by subthreshold electric fields and network topology. Journal of computational neuroscience. 34 [PubMed]

• Modulation of hippocampal rhythms by electric fields and network topology (Berzhanskaya et al. 2013) [Model]

Bezaire MJ, Raikov I, Burk K, Vyas D, Soltesz I. (2016). Interneuronal mechanisms of hippocampal theta oscillations in a full-scale model of the rodent CA1 circuit. eLife. 5 [PubMed]

• Hippocampal CA1 NN with spontaneous theta, gamma: full scale & network clamp (Bezaire et al 2016) [Model]

Bianchi D et al. (2014). Effects of increasing CREB-dependent transcription on the storage and recall processes in a hippocampal CA1 microcircuit. Hippocampus. 24 [PubMed]

• Effects of increasing CREB on storage and recall processes in a CA1 network (Bianchi et al. 2014) [Model]

Canakci S, Toy MF, Inci AF, Liu X, Kuzum D. (2017). Computational analysis of network activity and spatial reach of sharp wave-ripples. PloS one. 12 [PubMed]

• Computational analysis of NN activity and spatial reach of sharp wave-ripples (Canakci et al 2017) [Model]

Cutsuridis V, Cobb S, Graham BP. (2010). Encoding and retrieval in a model of the hippocampal CA1 microcircuit. Hippocampus. 20 [PubMed]

• Encoding and retrieval in a model of the hippocampal CA1 microcircuit (Cutsuridis et al. 2009) [Model]

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• Long time windows from theta modulated inhib. in entorhinal–hippo. loop (Cutsuridis & Poirazi 2015) [Model]

Ferguson KA et al. (2015). Network models provide insights into how oriens-lacunosum-moleculare and bistratified cell interactions influence the power of local hippocampal CA1 theta oscillations. Frontiers in systems neuroscience. 9 [PubMed]

• CA1 SOM+ (OLM) hippocampal interneuron (Ferguson et al. 2015) [Model]

Fink CG, Gliske S, Catoni N, Stacey WC. (2015). Network Mechanisms Generating Abnormal and Normal Hippocampal High-Frequency Oscillations: A Computational Analysis. eNeuro. 2 [PubMed]

• Normal ripples, abnormal ripples, and fast ripples in a hippocampal model (Fink et al. 2015) [Model]

Földy C, Aradi I, Howard A, Soltesz I. (2004). Diversity beyond variance: modulation of firing rates and network coherence by GABAergic subpopulations. The European journal of neuroscience. 19 [PubMed]

Gloveli T et al. (2005). Orthogonal arrangement of rhythm-generating microcircuits in the hippocampus. Proceedings of the National Academy of Sciences of the United States of America. 102 [PubMed]

• Gamma and theta rythms in biophysical models of hippocampus circuits (Kopell et al. 2011) [Model]

Hajós M, Hoffmann WE, Orbán G, Kiss T, Erdi P. (2004). Modulation of septo-hippocampal Theta activity by GABAA receptors: an experimental and computational approach. Neuroscience. 126 [PubMed]

• Modulation of septo-hippocampal theta activity by GABAA receptors (Hajos et al. 2004) [Model]

Hardie JB, Pearce RA. (2006). Active and passive membrane properties and intrinsic kinetics shape synaptic inhibition in hippocampal CA1 pyramidal neurons. The Journal of neuroscience : the official journal of the Society for Neuroscience. 26 [PubMed]

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• Role for short term plasticity and OLM cells in containing spread of excitation (Hummos et al 2014) [Model]

Jalil S, Grigull J, Skinner FK. (2004). Novel bursting patterns emerging from model inhibitory networks with synaptic depression. Journal of computational neuroscience. 17 [PubMed]

Kopell N, Borgers C, Pervouchine D, Tort AB, Malerba P. (2010). Gamma and theta rhythms in biophysical models of hippocampal circuits Hippocampal Microcircuits: A Computational Modeller`s Resource Book. Ch. 15..

• Gamma and theta rythms in biophysical models of hippocampus circuits (Kopell et al. 2011) [Model]

Luo X et al. (2020). Synaptic Mechanisms Underlying the Network State-Dependent Recruitment of VIP-Expressing Interneurons in the CA1 Hippocampus. Cerebral cortex (New York, N.Y. : 1991). 30 [PubMed]

• Hippocampus CA1 Interneuron Specific 3 (IS3) in vivo-like virtual NN simulations (Luo et al 2020) [Model]

Maex R, De Schutter E. (2003). Resonant synchronization in heterogeneous networks of inhibitory neurons. The Journal of neuroscience : the official journal of the Society for Neuroscience. 23 [PubMed]

• Fast oscillations in inhibitory networks (Maex, De Schutter 2003) [Model]

Malerba P, Krishnan GP, Fellous JM, Bazhenov M. (2016). Hippocampal CA1 Ripples as Inhibitory Transients. PLoS computational biology. 12 [PubMed]

• CA1 pyramidal cells, basket cells, ripples (Malerba et al 2016) [Model]

Markram H et al. (2015). Reconstruction and Simulation of Neocortical Microcircuitry. Cell. 163 [PubMed]

• The neocortical microcircuit collaboration portal (Markram et al. 2015) [Model]

Masuda N, Doiron B, Longtin A, Aihara K. (2005). Coding of temporally varying signals in networks of spiking neurons with global delayed feedback. Neural computation. 17 [PubMed]

Mittmann W, Chadderton P, Häusser M. (2004). Neuronal microcircuits: frequency-dependent flow of inhibition. Current biology : CB. 14 [PubMed]

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• Cellular classes revealed by heartbeat-related modulation of extracellular APs (Mosher et al 2020) [Model]

Nowotny T, Levi R, Selverston AI. (2008). Probing the dynamics of identified neurons with a data-driven modeling approach. PloS one. 3 [PubMed]

• Data-driven, HH-type model of the lateral pyloric (LP) cell in the STG (Nowotny et al. 2008) [Model]

Rotstein HG et al. (2005). Slow and fast inhibition and an H-current interact to create a theta rhythm in a model of CA1 interneuron network. Journal of neurophysiology. 94 [PubMed]

Saraga F, Ng L, Skinner FK. (2006). Distal gap junctions and active dendrites can tune network dynamics. Journal of neurophysiology. 95 [PubMed]

• Hippocampal basket cell gap junction network dynamics (Saraga et al. 2006) [Model]

Saudargiene A, Cobb S, Graham BP. (2015). A computational study on plasticity during theta cycles at Schaffer collateral synapses on CA1 pyramidal cells in the hippocampus. Hippocampus. 25 [PubMed]

• CA1 pyramidal neuron: synaptic plasticity during theta cycles (Saudargiene et al. 2015) [Model]

Scorcioni R, Hamilton DJ, Ascoli GA. (2008). Self-sustaining non-repetitive activity in a large scale neuronal-level model of the hippocampal circuit. Neural networks : the official journal of the International Neural Network Society. 21 [PubMed]

Shuman T et al. (2020). Breakdown of spatial coding and interneuron synchronization in epileptic mice. Nature neuroscience. 23 [PubMed]

• CA1 network model: interneuron contributions to epileptic deficits (Shuman et al 2020) [Model]

Sinha M, Narayanan R. (2015). HCN channels enhance spike phase coherence and regulate the phase of spikes and LFPs in the theta-frequency range. Proceedings of the National Academy of Sciences of the United States of America. 112 [PubMed]

• Subthreshold conductances regulate theta-frequency LFPs and spike phase (Sinha and Narayanan, 2015) [Model]

Stacey WC, Lazarewicz MT, Litt B. (2009). Synaptic noise and physiological coupling generate high-frequency oscillations in a hippocampal computational model. Journal of neurophysiology. 102 [PubMed]

• High frequency oscillations in a hippocampal computational model (Stacey et al. 2009) [Model]

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• Hippocampus CA1 OLM cell multicompartment conductance-based model (Sun et al. 2023) [Model]

Taxidis J, Coombes S, Mason R, Owen MR. (2012). Modeling sharp wave-ripple complexes through a CA3-CA1 network model with chemical synapses. Hippocampus. 22 [PubMed]

• CRH modulates excitatory transmission and network physiology in hippocampus (Gunn et al. 2017) [Model]

Vascak M, Sun J, Baer M, Jacobs KM, Povlishock JT. (2017). Mild Traumatic Brain Injury Evokes Pyramidal Neuron Axon Initial Segment Plasticity and Diffuse Presynaptic Inhibitory Terminal Loss. Frontiers in cellular neuroscience. 11 [PubMed]

Vladimirov N, Tu Y, Traub RD. (2013). Synaptic gating at axonal branches, and sharp-wave ripples with replay: a simulation study. The European journal of neuroscience. 38 [PubMed]

• Synaptic gating at axonal branches, and sharp-wave ripples with replay (Vladimirov et al. 2013) [Model]

Zou X, Coyle D, Wong-Lin K, Maguire L. (2011). Computational study of hippocampal-septal theta rhythm changes due to ß-amyloid-altered ionic channels. PloS one. 6 [PubMed]

Zou X, Coyle D, Wong-Lin K, Maguire L. (2012). Beta-amyloid induced changes in A-type K? current can alter hippocampo-septal network dynamics. Journal of computational neuroscience. 32 [PubMed]

Świetlik D, Białowąs J, Kusiak A, Cichońska D. (2018). A computational simulation of long-term synaptic potentiation inducing protocol processes with model of CA3 hippocampal microcircuit. Folia morphologica. 77 [PubMed]