Abilez OJ et al. (2011). Multiscale computational models for optogenetic control of cardiac function. Biophysical journal. 101 [PubMed]
Allen TJ, Mikala G. (1998). Effects of temperature on human L-type cardiac Ca2+ channels expressed in Xenopus oocytes. Pflugers Archiv : European journal of physiology. 436 [PubMed]
Axelrod D. (1977). Cell surface heating during fluorescence photobleaching recovery experiments. Biophysical journal. 18 [PubMed]
Bamann C, Kirsch T, Nagel G, Bamberg E. (2008). Spectral characteristics of the photocycle of channelrhodopsin-2 and its implication for channel function. Journal of molecular biology. 375 [PubMed]
Berndt A et al. (2011). High-efficiency channelrhodopsins for fast neuronal stimulation at low light levels. Proceedings of the National Academy of Sciences of the United States of America. 108 [PubMed]
Berndt A, Yizhar O, Gunaydin LA, Hegemann P, Deisseroth K. (2009). Bi-stable neural state switches. Nature neuroscience. 12 [PubMed]
Bernstein JG, Garrity PA, Boyden ES. (2012). Optogenetics and thermogenetics: technologies for controlling the activity of targeted cells within intact neural circuits. Current opinion in neurobiology. 22 [PubMed]
Boyden ES, Zhang F, Bamberg E, Nagel G, Deisseroth K. (2005). Millisecond-timescale, genetically targeted optical control of neural activity. Nature neuroscience. 8 [PubMed]
Bruegmann T et al. (2010). Optogenetic control of heart muscle in vitro and in vivo. Nature methods. 7 [PubMed]
Chater TE, Henley JM, Brown JT, Randall AD. (2010). Voltage- and temperature-dependent gating of heterologously expressed channelrhodopsin-2. Journal of neuroscience methods. 193 [PubMed]
Courtemanche M, Ramirez RJ, Nattel S. (1998). Ionic mechanisms underlying human atrial action potential properties: insights from a mathematical model. The American journal of physiology. 275 [PubMed]
Cummins TR, Fu LY, Moczydlowski EG. (2013). Sensitivity of cloned muscle, heart and neuronal voltage-gated sodium channels to block by polyamines: a possible basis for modulation of excitability in vivo. Channels (Austin). 6
Deisseroth K. (2012). Optogenetics and psychiatry: applications, challenges, and opportunities. Biological psychiatry. 71 [PubMed]
Deisseroth K et al. (2006). Next-generation optical technologies for illuminating genetically targeted brain circuits. The Journal of neuroscience : the official journal of the Society for Neuroscience. 26 [PubMed]
Deisseroth K et al. (2012). Principles for applying optogenetic tools derived from direct comparative analysis of microbial opsins. Nat Methods. 9
Doerr T, Denger R, Doerr A, Trautwein W. (1990). Ionic currents contributing to the action potential in single ventricular myocytes of the guinea pig studied with action potential clamp. Pflugers Archiv : European journal of physiology. 416 [PubMed]
Donevan SD, Rogawski MA. (1995). Intracellular polyamines mediate inward rectification of Ca(2+)-permeable alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid receptors. Proceedings of the National Academy of Sciences of the United States of America. 92 [PubMed]
Entcheva E. (2013). Cardiac optogenetics. American journal of physiology. Heart and circulatory physiology. 304 [PubMed]
Ernst OP et al. (2008). Photoactivation of channelrhodopsin. The Journal of biological chemistry. 283 [PubMed]
Feldbauer K et al. (2009). Channelrhodopsin-2 is a leaky proton pump. Proceedings of the National Academy of Sciences of the United States of America. 106 [PubMed]
Ficker E, Taglialatela M, Wible BA, Henley CM, Brown AM. (1994). Spermine and spermidine as gating molecules for inward rectifier K+ channels. Science (New York, N.Y.). 266 [PubMed]
Foutz TJ, Arlow RL, McIntyre CC. (2012). Theoretical principles underlying optical stimulation of a channelrhodopsin-2 positive pyramidal neuron. Journal of neurophysiology. 107 [PubMed]
Gao J, Mathias RT, Cohen IS, Baldo GJ. (1992). Isoprenaline, Ca2+ and the Na(+)-K+ pump in guinea-pig ventricular myocytes. The Journal of physiology. 449 [PubMed]
Goldman MS, Golowasch J, Marder E, Abbott LF. (2001). Global structure, robustness, and modulation of neuronal models. The Journal of neuroscience : the official journal of the Society for Neuroscience. 21 [PubMed]
Gradmann D, Berndt A, Schneider F, Hegemann P. (2011). Rectification of the channelrhodopsin early conductance. Biophysical journal. 101 [PubMed]
Grossman N, Nikolic K, Toumazou C, Degenaar P. (2011). Modeling study of the light stimulation of a neuron cell with channelrhodopsin-2 mutants. IEEE transactions on bio-medical engineering. 58 [PubMed]
Gunaydin LA et al. (2010). Ultrafast optogenetic control. Nature neuroscience. 13 [PubMed]
HODGKIN AL, HUXLEY AF. (1952). A quantitative description of membrane current and its application to conduction and excitation in nerve. The Journal of physiology. 117 [PubMed]
Hegemann P, Ehlenbeck S, Gradmann D. (2005). Multiple photocycles of channelrhodopsin. Biophysical journal. 89 [PubMed]
Hille B. (1992). Ion Channels of Excitable Membranes.
Horie M, Irisawa H. (1987). Rectification of muscarinic K+ current by magnesium ion in guinea pig atrial cells. The American journal of physiology. 253 [PubMed]
Jia Z et al. (2011). Stimulating cardiac muscle by light: cardiac optogenetics by cell delivery. Circulation. Arrhythmia and electrophysiology. 4 [PubMed]
Kato HE et al. (2012). Crystal structure of the channelrhodopsin light-gated cation channel. Nature. 482 [PubMed]
Kléber AG, Rudy Y. (2004). Basic mechanisms of cardiac impulse propagation and associated arrhythmias. Physiological reviews. 84 [PubMed]
Lin JY, Lin MZ, Steinbach P, Tsien RY. (2009). Characterization of engineered channelrhodopsin variants with improved properties and kinetics. Biophysical journal. 96 [PubMed]
Livshitz LM, Rudy Y. (2007). Regulation of Ca2+ and electrical alternans in cardiac myocytes: role of CAMKII and repolarizing currents. American journal of physiology. Heart and circulatory physiology. 292 [PubMed]
Lopatin AN, Makhina EN, Nichols CG. (1994). Potassium channel block by cytoplasmic polyamines as the mechanism of intrinsic rectification. Nature. 372 [PubMed]
Matsuda H, Saigusa A, Irisawa H. (1987). Ohmic conductance through the inwardly rectifying K channel and blocking by internal Mg2+. Nature. 325 [PubMed]
Müller M, Bamann C, Bamberg E, Kühlbrandt W. (2011). Projection structure of channelrhodopsin-2 at 6 Å resolution by electron crystallography. Journal of molecular biology. 414 [PubMed]
Nagel G et al. (2005). Light activation of channelrhodopsin-2 in excitable cells of Caenorhabditis elegans triggers rapid behavioral responses. Current biology : CB. 15 [PubMed]
Nagel G et al. (2003). Channelrhodopsin-2, a directly light-gated cation-selective membrane channel. Proceedings of the National Academy of Sciences of the United States of America. 100 [PubMed]
Nikolic K et al. (2009). Photocycles of channelrhodopsin-2. Photochemistry and photobiology. 85 [PubMed]
Noble D. (2002). Modeling the heart--from genes to cells to the whole organ. Science (New York, N.Y.). 295 [PubMed]
Oliva C, Cohen IS, Pennefather P. (1990). The mechanism of rectification of iK1 in canine Purkinje myocytes. The Journal of general physiology. 96 [PubMed]
Sampson KJ, Iyer V, Marks AR, Kass RS. (2010). A computational model of Purkinje fibre single cell electrophysiology: implications for the long QT syndrome. The Journal of physiology. 588 [PubMed]
Stehfest K, Hegemann P. (2010). Evolution of the channelrhodopsin photocycle model. Chemphyschem : a European journal of chemical physics and physical chemistry. 11 [PubMed]
Talathi SS, Carney PR, Khargonekar PP. (2011). Control of neural synchrony using channelrhodopsin-2: a computational study. Journal of computational neuroscience. 31 [PubMed]
Uehara A, Fill M, Vélez P, Yasukochi M, Imanaga I. (1996). Rectification of rabbit cardiac ryanodine receptor current by endogenous polyamines. Biophysical journal. 71 [PubMed]
Williams JC, Trayanova NA, Entcheva E, Boyle PM. (2012). A computational framework for simulating cardiac optogenetics.
Williams JC, Trayanova NA, Entcheva E, Boyle PM. (2012). Spatial distribution of channelrhodopsin-2 affects optical stimulation efficiency in cardiac tissue.
Wong J, Abilez OJ, Kuhl E. (2012). Computational Optogenetics: A Novel Continuum Framework for the Photoelectrochemistry of Living Systems. Journal of the mechanics and physics of solids. 60 [PubMed]
Yizhar O, Fenno LE, Davidson TJ, Mogri M, Deisseroth K. (2011). Optogenetics in neural systems. Neuron. 71 [PubMed]
Zimmermann D et al. (2008). Effects on capacitance by overexpression of membrane proteins. Biochemical and biophysical research communications. 369 [PubMed]
ten Tusscher KH, Panfilov AV. (2006). Alternans and spiral breakup in a human ventricular tissue model. American journal of physiology. Heart and circulatory physiology. 291 [PubMed]
DeWoskin D et al. (2015). Distinct roles for GABA across multiple timescales in mammalian circadian timekeeping. Proceedings of the National Academy of Sciences of the United States of America. 112 [PubMed]
Evans BD, Jarvis S, Schultz SR, Nikolic K. (2016). PyRhO: A Multiscale Optogenetics Simulation Platform. Frontiers in neuroinformatics. 10 [PubMed]