Cochlea: inner ear models in Python (Zilany et al 2009, 2014; Holmberg M 2007)


Zilany MS, Bruce IC, Nelson PC, Carney LH. (2009). A phenomenological model of the synapse between the inner hair cell and auditory nerve: long-term adaptation with power-law dynamics. The Journal of the Acoustical Society of America. 126 [PubMed]

See more from authors: Zilany MS · Bruce IC · Nelson PC · Carney LH

References and models cited by this paper

Abbas PJ. (1979). Effects of stimulus frequency on adaptation in auditory-nerve fibers. The Journal of the Acoustical Society of America. 65 [PubMed]

Beurg M, Nam JH, Crawford A, Fettiplace R. (2008). The actions of calcium on hair bundle mechanics in mammalian cochlear hair cells. Biophysical journal. 94 [PubMed]

Breebaart J, van de Par S, Kohlrausch A. (2001). Binaural processing model based on contralateral inhibition. III. Dependence on temporal parameters. The Journal of the Acoustical Society of America. 110 [PubMed]

Brown MC, Stein RB. (1966). Quantitative studies on the slowly adapting stretch receptor of the crayfish. Kybernetik. 3 [PubMed]

Bruce IC, Sachs MB, Young ED. (2003). An auditory-periphery model of the effects of acoustic trauma on auditory nerve responses. The Journal of the Acoustical Society of America. 113 [PubMed]

Carney LH. (1993). A model for the responses of low-frequency auditory-nerve fibers in cat. The Journal of the Acoustical Society of America. 93 [PubMed]

Cooke MP. (1986). A computer model of peripheral auditory processing Speech Commun. 5

Dau T, Kollmeier B, Kohlrausch A. (1997). Modeling auditory processing of amplitude modulation. I. Detection and masking with narrow-band carriers. The Journal of the Acoustical Society of America. 102 [PubMed]

Dau T, Püschel D, Kohlrausch A. (1996). A quantitative model of the "effective" signal processing in the auditory system. II. Simulations and measurements. The Journal of the Acoustical Society of America. 99 [PubMed]

Dau T, Püschel D, Kohlrausch A. (1996). A quantitative model of the "effective" signal processing in the auditory system. I. Model structure. The Journal of the Acoustical Society of America. 99 [PubMed]

Dean I, Harper NS, McAlpine D. (2005). Neural population coding of sound level adapts to stimulus statistics. Nature neuroscience. 8 [PubMed]

Delgutte B. (1980). Representation of speech-like sounds in the discharge patterns of auditory-nerve fibers. The Journal of the Acoustical Society of America. 68 [PubMed]

Drew PJ, Abbott LF. (2006). Models and properties of power-law adaptation in neural systems. Journal of neurophysiology. 96 [PubMed]

Ewert SD, Verhey JL, Dau T. (2002). Spectro-temporal processing in the envelope-frequency domain. The Journal of the Acoustical Society of America. 112 [PubMed]

Fairhall AL, Lewen GD, Bialek W, de Ruyter Van Steveninck RR. (2001). Efficiency and ambiguity in an adaptive neural code. Nature. 412 [PubMed]

French AS. (1984). The receptor potential and adaptation in the cockroach tactile spine. The Journal of neuroscience : the official journal of the Society for Neuroscience. 4 [PubMed]

French AS, Torkkeli PH. (2008). The power law of sensory adaptation: simulation by a model of excitability in spider mechanoreceptor neurons. Annals of biomedical engineering. 36 [PubMed]

Furukawa T, Kuno M, Matsuura S. (1982). Quantal analysis of a decremental response at hair cell-afferent fibre synapses in the goldfish sacculus. The Journal of physiology. 322 [PubMed]

Furukawa T, Matsuura S. (1978). Adaptive rundown of excitatory post-synaptic potentials at synapses between hair cells and eight nerve fibres in the goldfish. The Journal of physiology. 276 [PubMed]

Goutman JD, Glowatzki E. (2007). Time course and calcium dependence of transmitter release at a single ribbon synapse. Proceedings of the National Academy of Sciences of the United States of America. 104 [PubMed]

Greenwood DD, Joris PX. (1996). Mechanical and "temporal" filtering as codeterminants of the response by cat primary fibers to amplitude-modulated signals. The Journal of the Acoustical Society of America. 99 [PubMed]

Hanna TE, Robinson DE, Shiffrin RM, Gilkey RH. (1982). Forward masking of diotic and dichotic clicks by noise. The Journal of the Acoustical Society of America. 72 [PubMed]

Harris DM, Dallos P. (1979). Forward masking of auditory nerve fiber responses. Journal of neurophysiology. 42 [PubMed]

Hewitt MJ, Meddis R. (1991). An evaluation of eight computer models of mammalian inner hair-cell function. The Journal of the Acoustical Society of America. 90 [PubMed]

Jackson BS. (2003). Consequences of long-range temporal dependence in neural spiking activity for theories of processing and coding Unpublished doctoral dissertation, Syracuse University.

Jackson BS, Carney LH. (2005). The spontaneous-rate histogram of the auditory nerve can be explained by only two or three spontaneous rates and long-range dependence. Journal of the Association for Research in Otolaryngology : JARO. 6 [PubMed]

Jia S, Dallos P, He DZ. (2007). Mechanoelectric transduction of adult inner hair cells. The Journal of neuroscience : the official journal of the Society for Neuroscience. 27 [PubMed]

Johnson DH. (1980). The relationship between spike rate and synchrony in responses of auditory-nerve fibers to single tones. The Journal of the Acoustical Society of America. 68 [PubMed]

Joris PX. (2003). Interaural time sensitivity dominated by cochlea-induced envelope patterns. The Journal of neuroscience : the official journal of the Society for Neuroscience. 23 [PubMed]

Joris PX, Carney LH, Smith PH, Yin TC. (1994). Enhancement of neural synchronization in the anteroventral cochlear nucleus. I. Responses to tones at the characteristic frequency. Journal of neurophysiology. 71 [PubMed]

Joris PX, Yin TC. (1992). Responses to amplitude-modulated tones in the auditory nerve of the cat. The Journal of the Acoustical Society of America. 91 [PubMed]

Kelly OE, Johnson DH, Delgutte B, Cariani P. (1996). Fractal noise strength in auditory-nerve fiber recordings. The Journal of the Acoustical Society of America. 99 [PubMed]

Kiang NY. (1990). Curious oddments of auditory-nerve studies. Hearing research. 49 [PubMed]

Kros CJ, Crawford AC. (1990). Potassium currents in inner hair cells isolated from the guinea-pig cochlea. The Journal of physiology. 421 [PubMed]

La Camera G et al. (2006). Multiple time scales of temporal response in pyramidal and fast spiking cortical neurons. Journal of neurophysiology. 96 [PubMed]

Leopold DA, Murayama Y, Logothetis NK. (2003). Very slow activity fluctuations in monkey visual cortex: implications for functional brain imaging. Cerebral cortex (New York, N.Y. : 1991). 13 [PubMed]

Liberman MC. (1978). Auditory-nerve response from cats raised in a low-noise chamber. The Journal of the Acoustical Society of America. 63 [PubMed]

Louage DH, van der Heijden M, Joris PX. (2004). Temporal properties of responses to broadband noise in the auditory nerve. Journal of neurophysiology. 91 [PubMed]

Lowen SB, Teich MC. (1994). Fractal patterns in auditory nerve-spike trains IEEE Engin Med Biol Mag. 13

Lundstrom BN, Higgs MH, Spain WJ, Fairhall AL. (2008). Fractional differentiation by neocortical pyramidal neurons. Nature neuroscience. 11 [PubMed]

Meddis R. (1986). Simulation of mechanical to neural transduction in the auditory receptor. The Journal of the Acoustical Society of America. 79 [PubMed]

Meddis R, O'Mard LP. (2005). A computer model of the auditory-nerve response to forward-masking stimuli. The Journal of the Acoustical Society of America. 117 [PubMed]

Miller RL, Schilling JR, Franck KR, Young ED. (1997). Effects of acoustic trauma on the representation of the vowel "eh" in cat auditory nerve fibers. The Journal of the Acoustical Society of America. 101 [PubMed]

Moser T, Beutner D. (2000). Kinetics of exocytosis and endocytosis at the cochlear inner hair cell afferent synapse of the mouse. Proceedings of the National Academy of Sciences of the United States of America. 97 [PubMed]

Müller M, Robertson D. (1991). Relationship between tone burst discharge pattern and spontaneous firing rate of auditory nerve fibres in the guinea pig. Hearing research. 57 [PubMed]

Nelson PC, Carney LH. (2004). A phenomenological model of peripheral and central neural responses to amplitude-modulated tones. The Journal of the Acoustical Society of America. 116 [PubMed]

Nelson PC, Smith ZM, Young ED. (2009). Wide-dynamic-range forward suppression in marmoset inferior colliculus neurons is generated centrally and accounts for perceptual masking. The Journal of neuroscience : the official journal of the Society for Neuroscience. 29 [PubMed]

Oono Y, Sujaku Y. (1974). A probabilistic model for discharge patterns of auditory nerve fibers Trans Inst Elect Comm Eng Japan. 57

Oono Y, Sujaku Y. (1975). A model for automatic gain control observed in the firing of primary auditory neurons Trans Inst Elect Comm Eng. 58

Payton KL. (1988). Vowel processing by a model of the auditory periphery: a comparison to eighth-nerve responses. The Journal of the Acoustical Society of America. 83 [PubMed]

Raman IM, Zhang S, Trussell LO. (1994). Pathway-specific variants of AMPA receptors and their contribution to neuronal signaling. The Journal of neuroscience : the official journal of the Society for Neuroscience. 14 [PubMed]

Relkin EM, Doucet JR. (1991). Recovery from prior stimulation. I: Relationship to spontaneous firing rates of primary auditory neurons. Hearing research. 55 [PubMed]

Relkin EM, Turner CW. (1988). A reexamination of forward masking in the auditory nerve. The Journal of the Acoustical Society of America. 84 [PubMed]

Rhode WS, Smith PH. (1985). Characteristics of tone-pip response patterns in relationship to spontaneous rate in cat auditory nerve fibers. Hearing research. 18 [PubMed]

Ross S. (1982). A model of the hair cell-primary fiber complex. The Journal of the Acoustical Society of America. 71 [PubMed]

Ross S. (1996). A functional model of the hair cell-primary fiber complex. The Journal of the Acoustical Society of America. 99 [PubMed]

Schnee ME, Lawton DM, Furness DN, Benke TA, Ricci AJ. (2005). Auditory hair cell-afferent fiber synapses are specialized to operate at their best frequencies. Neuron. 47 [PubMed]

Schroeder MR, Hall JL. (1974). Model for mechanical to neural transduction in the auditory receptor. The Journal of the Acoustical Society of America. 55 [PubMed]

Schwid HA, Geisler CD. (1982). Multiple reservoir model of neurotransmitter release by a cochlear inner hair cell. The Journal of the Acoustical Society of America. 72 [PubMed]

Shannon RV, Zeng FG, Kamath V, Wygonski J, Ekelid M. (1995). Speech recognition with primarily temporal cues. Science (New York, N.Y.). 270 [PubMed]

Siebert WM, Gambardella G. (1968). Phenomenological model for a form of adaptation in primary auditory-nerve fibers Rle Qpr Communications Biophysics. 88

Smirnakis SM, Berry MJ, Warland DK, Bialek W, Meister M. (1997). Adaptation of retinal processing to image contrast and spatial scale. Nature. 386 [PubMed]

Smith RL. (1977). Short-term adaptation in single auditory nerve fibers: some poststimulatory effects. Journal of neurophysiology. 40 [PubMed]

Smith RL. (1988). Encoding of sound intensity by auditory neurons. Auditory Function: Neurobiological Bases of Hearing..

Smith RL, Brachman ML. (1982). Adaptation in auditory-nerve fibers: a revised model. Biological cybernetics. 44 [PubMed]

Smith RL, Brachman ML, Frisina RD. (1985). Sensitivity of auditory-nerve fibers to changes in intensity: a dichotomy between decrements and increments. The Journal of the Acoustical Society of America. 78 [PubMed]

Smith RL, Zwislocki JJ. (1975). Short-term adaptation and incremental responses of single auditory-nerve fibers. Biological cybernetics. 17 [PubMed]

Smith RS, Chapman KM. (1963). A linear transfer function underlying impulse frequency modulation in a cockroach mechanoreceptor, Nature London. 197

Sumner CJ, Lopez-Poveda EA, O'Mard LP, Meddis R. (2002). A revised model of the inner-hair cell and auditory-nerve complex. The Journal of the Acoustical Society of America. 111 [PubMed]

Sumner CJ, Lopez-Poveda EA, O'Mard LP, Meddis R. (2003). Adaptation in a revised inner-hair cell model. The Journal of the Acoustical Society of America. 113 [PubMed]

Teich MC. (1989). Fractal character of the auditory neural spike train. IEEE transactions on bio-medical engineering. 36 [PubMed]

Thorson J, Biederman-Thorson M. (1974). Distributed relaxation processes in sensory adaptation. Science (New York, N.Y.). 183 [PubMed]

Toib A, Lyakhov V, Marom S. (1998). Interaction between duration of activity and time course of recovery from slow inactivation in mammalian brain Na+ channels. The Journal of neuroscience : the official journal of the Society for Neuroscience. 18 [PubMed]

Ulanovsky N, Las L, Farkas D, Nelken I. (2004). Multiple time scales of adaptation in auditory cortex neurons. The Journal of neuroscience : the official journal of the Society for Neuroscience. 24 [PubMed]

Watanabe T, Kiang NYS, Thomas C, Clark LF. (1965). Discharge Patterns Of Single Fibers In The Cats Auditory Nerve.

Watkins PV, Barbour DL. (2008). Specialized neuronal adaptation for preserving input sensitivity. Nature neuroscience. 11 [PubMed]

Westerman LA. (1985). Adaptation and recovery of auditory nerve responses.

Westerman LA, Smith RL. (1987). Conservation of adapting components in auditory-nerve responses. The Journal of the Acoustical Society of America. 81 [PubMed]

Westerman LA, Smith RL. (1988). A diffusion model of the transient response of the cochlear inner hair cell synapse. The Journal of the Acoustical Society of America. 83 [PubMed]

Wixted JT, Ebbesen EB. (1997). Genuine power curves in forgetting: a quantitative analysis of individual subject forgetting functions. Memory & cognition. 25 [PubMed]

Xu Z, Payne JR, Nelson ME. (1996). Logarithmic time course of sensory adaptation in electrosensory afferent nerve fibers in a weakly electric fish. Journal of neurophysiology. 76 [PubMed]

Yates GK. (1987). Dynamic effects in the input/output relationship of auditory nerve. Hearing research. 27 [PubMed]

Yates GK, Robertson D, Johnstone BM. (1985). Very rapid adaptation in the guinea pig auditory nerve. Hearing research. 17 [PubMed]

Young E, Sachs MB. (1973). Recovery from sound exposure in auditory-nerve fibers. The Journal of the Acoustical Society of America. 54 [PubMed]

Zeddies DG, Siegel JH. (2004). A biophysical model of an inner hair cell. The Journal of the Acoustical Society of America. 116 [PubMed]

Zhang F, Miller CA, Robinson BK, Abbas PJ, Hu N. (2007). Changes across time in spike rate and spike amplitude of auditory nerve fibers stimulated by electric pulse trains. Journal of the Association for Research in Otolaryngology : JARO. 8 [PubMed]

Zhang X, Carney LH. (2005). Analysis of models for the synapse between the inner hair cell and the auditory nerve. The Journal of the Acoustical Society of America. 118 [PubMed]

Zhang X, Heinz MG, Bruce IC, Carney LH. (2001). A phenomenological model for the responses of auditory-nerve fibers: I. Nonlinear tuning with compression and suppression. The Journal of the Acoustical Society of America. 109 [PubMed]

Zilany MS, Bruce IC. (2006). Modeling auditory-nerve responses for high sound pressure levels in the normal and impaired auditory periphery. The Journal of the Acoustical Society of America. 120 [PubMed]

Zilany MS, Bruce IC. (2007). Representation of the vowel /epsilon/ in normal and impaired auditory nerve fibers: model predictions of responses in cats. The Journal of the Acoustical Society of America. 122 [PubMed]

Zwicker E. (1984). Dependence of post-masking on masker duration and its relation to temporal effects in loudness. The Journal of the Acoustical Society of America. 75 [PubMed]

References and models that cite this paper

Altoè A, Pulkki V, Verhulst S. (2018). The effects of the activation of the inner-hair-cell basolateral K+ channels on auditory nerve responses. Hearing research. 364 [PubMed]

Dietz M, Wang L, Greenberg D, McAlpine D. (2016). Sensitivity to Interaural Time Differences Conveyed in the Stimulus Envelope: Estimating Inputs of Binaural Neurons Through the Temporal Analysis of Spike Trains. Journal of the Association for Research in Otolaryngology : JARO. 17 [PubMed]

Goldwyn JH, Rubinstein JT, Shea-Brown E. (2012). A point process framework for modeling electrical stimulation of the auditory nerve. Journal of neurophysiology. 108 [PubMed]

Manis PB, Campagnola L. (2018). A biophysical modelling platform of the cochlear nucleus and other auditory circuits: From channels to networks. Hearing research. 360 [PubMed]

Peterson AJ, Heil P. (2018). A simple model of the inner-hair-cell ribbon synapse accounts for mammalian auditory-nerve-fiber spontaneous spike times. Hearing research. 363 [PubMed]

Richard A, Orio P, Tanré E. (2018). An integrate-and-fire model to generate spike trains with long-range dependence Journal of Computational Neuroscience.

Rudnicki M, Hemmert W. (2017). High Entrainment Constrains Synaptic Depression Levels of an In vivo Globular Bushy Cell Model. Frontiers in computational neuroscience. 11 [PubMed]

Verhulst S, Altoè A, Vasilkov V. (2018). Computational modeling of the human auditory periphery: Auditory-nerve responses, evoked potentials and hearing loss. Hearing research. 360 [PubMed]

Zilany MS, Bruce IC, Carney LH. (2014). Updated parameters and expanded simulation options for a model of the auditory periphery. The Journal of the Acoustical Society of America. 135 [PubMed]

Zilany MS, Bruce IC, Carney LH. (2014). Updated parameters and expanded simulation options for a model of the auditory periphery. The Journal of the Acoustical Society of America. 135 [PubMed]

See more from authors: Zilany MS · Bruce IC · Carney LH

References and models cited by this paper

Bruce IC, Sachs MB, Young ED. (2003). An auditory-periphery model of the effects of acoustic trauma on auditory nerve responses. The Journal of the Acoustical Society of America. 113 [PubMed]

Carney LH. (1993). A model for the responses of low-frequency auditory-nerve fibers in cat. The Journal of the Acoustical Society of America. 93 [PubMed]

Drew PJ, Abbott LF. (2006). Models and properties of power-law adaptation in neural systems. Journal of neurophysiology. 96 [PubMed]

Joris PX, Yin TC. (1992). Responses to amplitude-modulated tones in the auditory nerve of the cat. The Journal of the Acoustical Society of America. 91 [PubMed]

Liberman MC. (1978). Auditory-nerve response from cats raised in a low-noise chamber. The Journal of the Acoustical Society of America. 63 [PubMed]

Louage DH, van der Heijden M, Joris PX. (2004). Temporal properties of responses to broadband noise in the auditory nerve. Journal of neurophysiology. 91 [PubMed]

Smith RL, Brachman ML, Frisina RD. (1985). Sensitivity of auditory-nerve fibers to changes in intensity: a dichotomy between decrements and increments. The Journal of the Acoustical Society of America. 78 [PubMed]

Teich MC, Vannucci G. (1978). Effects of rate variation on the counting statistics of dead-time-modified Poisson processes Opt Commu. 25(2)

Wakefield GH, Edwards BW. (1990). On the statistics of binned neural point processes: The Bernoulli approximation and AR representation of the PST histogram, Biol Cybern. 64

Westerman LA, Smith RL. (1988). A diffusion model of the transient response of the cochlear inner hair cell synapse. The Journal of the Acoustical Society of America. 83 [PubMed]

Young E, Sachs MB. (1973). Recovery from sound exposure in auditory-nerve fibers. The Journal of the Acoustical Society of America. 54 [PubMed]

Zhang X, Heinz MG, Bruce IC, Carney LH. (2001). A phenomenological model for the responses of auditory-nerve fibers: I. Nonlinear tuning with compression and suppression. The Journal of the Acoustical Society of America. 109 [PubMed]

Zilany MS, Bruce IC. (2006). Modeling auditory-nerve responses for high sound pressure levels in the normal and impaired auditory periphery. The Journal of the Acoustical Society of America. 120 [PubMed]

Zilany MS, Bruce IC. (2007). Representation of the vowel /epsilon/ in normal and impaired auditory nerve fibers: model predictions of responses in cats. The Journal of the Acoustical Society of America. 122 [PubMed]

Zilany MS, Bruce IC, Nelson PC, Carney LH. (2009). A phenomenological model of the synapse between the inner hair cell and auditory nerve: long-term adaptation with power-law dynamics. The Journal of the Acoustical Society of America. 126 [PubMed]

Zilany MS, Carney LH. (2010). Power-law dynamics in an auditory-nerve model can account for neural adaptation to sound-level statistics. The Journal of neuroscience : the official journal of the Society for Neuroscience. 30 [PubMed]

References and models that cite this paper

Manis PB, Campagnola L. (2018). A biophysical modelling platform of the cochlear nucleus and other auditory circuits: From channels to networks. Hearing research. 360 [PubMed]

Peterson AJ, Heil P. (2018). A simple model of the inner-hair-cell ribbon synapse accounts for mammalian auditory-nerve-fiber spontaneous spike times. Hearing research. 363 [PubMed]

Remme MWH, Rinzel J, Schreiber S. (2018). Function and energy consumption constrain neuronal biophysics in a canonical computation: Coincidence detection. PLoS computational biology. 14 [PubMed]

Rudnicki M, Hemmert W. (2017). High Entrainment Constrains Synaptic Depression Levels of an In vivo Globular Bushy Cell Model. Frontiers in computational neuroscience. 11 [PubMed]

Tabas A et al. (2019). Modeling and MEG evidence of early consonance processing in auditory cortex. PLoS computational biology. 15 [PubMed]

Verhulst S, Altoè A, Vasilkov V. (2018). Computational modeling of the human auditory periphery: Auditory-nerve responses, evoked potentials and hearing loss. Hearing research. 360 [PubMed]

Holmberg M. (2007). Speech Encoding in the Human Auditory Periphery: Modeling and Quantitative Assessment by Means of Automatic Speech Recognition PhD thesis, Technical University Darmstadt.

See more from authors: Holmberg M

References and models cited by this paper
References and models that cite this paper
This website requires cookies and limited processing of your personal data in order to function. By continuing to browse or otherwise use this site, you are agreeing to this use. See our Privacy policy and how to cite and terms of use.