Carvalho TP, Buonomano DV. (2009). Differential effects of excitatory and inhibitory plasticity on synaptically driven neuronal input-output functions. Neuron. 61 [PubMed]

• Balance of excitation and inhibition (Carvalho and Buonomano 2009) [Model]

Clopath C, Büsing L, Vasilaki E, Gerstner W. (2010). Connectivity reflects coding: a model of voltage-based STDP with homeostasis. Nature neuroscience. 13 [PubMed]

• Voltage-based STDP synapse (Clopath et al. 2010) [Model]

Clopath C, Ziegler L, Vasilaki E, Büsing L, Gerstner W. (2008). Tag-trigger-consolidation: a model of early and late long-term-potentiation and depression. PLoS computational biology. 4 [PubMed]

• Tag Trigger Consolidation (Clopath and Ziegler et al. 2008) [Model]

Graupner M, Brunel N. (2012). Calcium-based plasticity model explains sensitivity of synaptic changes to spike pattern, rate, and dendritic location. Proceedings of the National Academy of Sciences of the United States of America. 109 [PubMed]

Hardingham NR, Hardingham GE, Fox KD, Jack JJ. (2007). Presynaptic efficacy directs normalization of synaptic strength in layer 2/3 rat neocortex after paired activity. Journal of neurophysiology. 97 [PubMed]

Helfer P, Shultz TR. (2018). Coupled feedback loops maintain synaptic long-term potentiation: A computational model of PKMzeta synthesis and AMPA receptor trafficking. PLoS computational biology. 14 [PubMed]

• PKMZ synthesis and AMPAR regulation in late long-term synaptic potentiation (Helfer & Shultz 2018) [Model]

Helfer P, Shultz TR. (2018). Coupled feedback loops maintain synaptic long-term potentiation: A computational model arXiv.

• PKMZ synthesis and AMPAR regulation in late long-term synaptic potentiation (Helfer & Shultz 2018) [Model]

Hiratani N, Fukai T. (2017). Detailed Dendritic Excitatory/Inhibitory Balance through Heterosynaptic Spike-Timing-Dependent Plasticity. The Journal of neuroscience : the official journal of the Society for Neuroscience. 37 [PubMed]

• Heterosynaptic Spike-Timing-Dependent Plasticity (Hiratani & Fukai 2017) [Model]

Kim M, Huang T, Abel T, Blackwell KT. (2010). Temporal sensitivity of protein kinase a activation in late-phase long term potentiation. PLoS computational biology. 6 [PubMed]

• Hippocampus CA1: Temporal sensitivity of signaling pathways underlying LTP (Kim et al. 2010) [Model]

Kim Y, Hsu CL, Cembrowski MS, Mensh BD, Spruston N. (2015). Dendritic sodium spikes are required for long-term potentiation at distal synapses on hippocampal pyramidal neurons. eLife. 4 [PubMed]

• CA1 pyramidal neuron: Dendritic Na+ spikes are required for LTP at distal synapses (Kim et al 2015) [Model]

Lindskog M, Kim M, Wikström MA, Blackwell KT, Kotaleski JH. (2006). Transient calcium and dopamine increase PKA activity and DARPP-32 phosphorylation. PLoS computational biology. 2 [PubMed]

• Model of DARPP-32 phosphorylation in striatal medium spiny neurons (Lindskog et al. 2006) [Model]

Manninen T, Hituri K, Kotaleski JH, Blackwell KT, Linne ML. (2010). Postsynaptic signal transduction models for long-term potentiation and depression. Frontiers in computational neuroscience. 4 [PubMed]

Mattioni M, Le Novère N. (2013). Integration of biochemical and electrical signaling-multiscale model of the medium spiny neuron of the striatum. PloS one. 8 [PubMed]

• Multiscale simulation of the striatal medium spiny neuron (Mattioni & Le Novere 2013) [Model]

Miningou Zobon NT, Jędrzejewska-Szmek J, Blackwell KT. (2021). Temporal pattern and synergy influence activity of ERK signaling pathways during L-LTP induction eLife. 10 [PubMed]

• Dynamics of ERK signaling pathways during L-LTP induction(Miningou et al 2021) [Model]

O'Donnell C, Nolan MF, van Rossum MC. (2011). Dendritic spine dynamics regulate the long-term stability of synaptic plasticity. The Journal of neuroscience : the official journal of the Society for Neuroscience. 31 [PubMed]

• CA1 pyramidal neuron dendritic spine with plasticity (O`Donnell et al. 2011) [Model]

Seth AK, Edelman GM. (2007). Distinguishing causal interactions in neural populations. Neural computation. 19 [PubMed]

Urakubo H, Honda M, Froemke RC, Kuroda S. (2008). Requirement of an allosteric kinetics of NMDA receptors for spike timing-dependent plasticity. The Journal of neuroscience : the official journal of the Society for Neuroscience. 28 [PubMed]

• An allosteric kinetics of NMDARs in STDP (Urakubo et al. 2008) [Model]

Świetlik D, Białowąs J, Kusiak A, Cichońska D. (2018). Memory and forgetting processes with the firing neuron model. Folia morphologica. 77 [PubMed]