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• NMDA receptor saturation (Chen et al 2001) [Model]

Church E et al. (2022). Synaptic integration of subquantal neurotransmission by co-localized G protein coupled receptors in presynaptic terminals The Journal of neuroscience : the official journal of the Society for Neuroscience. 42 [PubMed]

• Synaptic vesicle fusion model (Church et al 2021) [Model]

Destexhe A, Bal T, McCormick DA, Sejnowski TJ. (1996). Ionic mechanisms underlying synchronized oscillations and propagating waves in a model of ferret thalamic slices. Journal of neurophysiology. 76 [PubMed]

• Thalamocortical and Thalamic Reticular Network (Destexhe et al 1996) [Model]
• Thalamocortical Relay cell under current clamp in high-conductance state (Zeldenrust et al 2018) [Model]

Destexhe A, Mainen ZF, Sejnowski TJ. (1994). Synthesis of models for excitable membranes, synaptic transmission and neuromodulation using a common kinetic formalism. Journal of computational neuroscience. 1 [PubMed]

• Application of a common kinetic formalism for synaptic models (Destexhe et al 1994) [Model]
• Kinetic synaptic models applicable to building networks (Destexhe et al 1998) [Model]

Dzubay JA, Jahr CE. (1999). The concentration of synaptically released glutamate outside of the climbing fiber-Purkinje cell synaptic cleft. The Journal of neuroscience : the official journal of the Society for Neuroscience. 19 [PubMed]

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• A nicotinic acetylcholine receptor kinetic model (Edelstein et al. 1996) [Model]

Geiger JR, Lübke J, Roth A, Frotscher M, Jonas P. (1997). Submillisecond AMPA receptor-mediated signaling at a principal neuron-interneuron synapse. Neuron. 18 [PubMed]

• Fast AMPA receptor signaling (Geiger et al 1997) [Model]

Gupta R, Reneaux M, Karmeshu. (2016). Role of Heterogeneous Macromolecular Crowding and Geometrical Irregularity at Central Excitatory Synapses in Shaping Synaptic Transmission. PloS one. 11 [PubMed]

• Spatially-varying glutamate diffusion coefficient at CA1 synaptic cleft space (Gupta et al. 2016) [Model]

Kampa BM, Clements J, Jonas P, Stuart GJ. (2004). Kinetics of Mg2+ unblock of NMDA receptors: implications for spike-timing dependent synaptic plasticity. The Journal of physiology. 556 [PubMed]

• Kinetic NMDA receptor model (Kampa et al 2004) [Model]

Petroccione MA et al. (2023). Neuronal glutamate transporters control reciprocal inhibition and gain modulation in D1 medium spiny neurons. eLife. 12 [PubMed]

• D1-MSN: The effect of EAAC1 on firing frequency (Petroccione et al., 2023) [Model]

Polsky A, Mel B, Schiller J. (2009). Encoding and decoding bursts by NMDA spikes in basal dendrites of layer 5 pyramidal neurons. The Journal of neuroscience : the official journal of the Society for Neuroscience. 29 [PubMed]

• NMDA spikes in basal dendrites of L5 pyramidal neurons (Polsky et al. 2009) [Model]

Postlethwaite M, Hennig MH, Steinert JR, Graham BP, Forsythe ID. (2007). Acceleration of AMPA receptor kinetics underlies temperature-dependent changes in synaptic strength at the rat calyx of Held. The Journal of physiology. 579 [PubMed]

• Modeling temperature changes in AMPAR kinetics (Postlethwaite et al 2007) [Model]

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• Efficient Method for Computing Synaptic Conductance (Destexhe et al 1994) [Model]
• Application of a common kinetic formalism for synaptic models (Destexhe et al 1994) [Model]
• Kinetic synaptic models applicable to building networks (Destexhe et al 1998) [Model]

Solinas SMG, Edelmann E, Leßmann V, Migliore M. (2019). A kinetic model for Brain-Derived Neurotrophic Factor mediated spike timing-dependent LTP. PLoS computational biology. 15 [PubMed]

• STDP and BDNF in CA1 spines (Solinas et al. 2019) [Model]

Sterratt DC, Graham B, Gillies A, Willshaw D. (2011). Principles of Computational Modelling in Neuroscience, Cambridge University Press.

• Principles of Computational Modelling in Neuroscience (Book) (Sterratt et al. 2011) [Model]

Trpevski D, Khodadadi Z, Carannante I, Hellgren Kotaleski J. (2023). Glutamate spillover drives robust all-or-none dendritic plateau potentials-an in silico investigation using models of striatal projection neurons. Frontiers in cellular neuroscience. 17 [PubMed]

• Glutamate spillover and plateau potentials (Trpevski et al., 2023) [Model]

Wong AY, Graham BP, Billups B, Forsythe ID. (2003). Distinguishing between presynaptic and postsynaptic mechanisms of short-term depression during action potential trains. The Journal of neuroscience : the official journal of the Society for Neuroscience. 23 [PubMed]