Akemann W, Lundby A, Mutoh H, Knöpfel T. (2009). Effect of voltage sensitive fluorescent proteins on neuronal excitability. Biophysical journal. 96 [PubMed]

• Effect of voltage sensitive fluorescent proteins on neuronal excitability (Akemann et al. 2009) [Model]

Bahl A, Stemmler MB, Herz AV, Roth A. (2012). Automated optimization of a reduced layer 5 pyramidal cell model based on experimental data. Journal of neuroscience methods. 210 [PubMed]

• A set of reduced models of layer 5 pyramidal neurons (Bahl et al. 2012) [Model]

Fleidervish IA, Lasser-Ross N, Gutnick MJ, Ross WN. (2010). Na+ imaging reveals little difference in action potential-evoked Na+ influx between axon and soma. Nature neuroscience. 13 [PubMed]

• Action potential-evoked Na+ influx are similar in axon and soma (Fleidervish et al. 2010) [Model]
• Action potential-evoked Na+ influx similar in axon and soma (Fleidervish et al. 2010) (Python) [Model]

Fleidervish IA, Libman L, Katz E, Gutnick MJ. (2008). Endogenous polyamines regulate cortical neuronal excitability by blocking voltage-gated Na+ channels. Proceedings of the National Academy of Sciences of the United States of America. 105 [PubMed]

Hay E, Hill S, Schürmann F, Markram H, Segev I. (2011). Models of neocortical layer 5b pyramidal cells capturing a wide range of dendritic and perisomatic active properties. PLoS computational biology. 7 [PubMed]

• L5b PC model constrained for BAC firing and perisomatic current step firing (Hay et al., 2011) [Model]
• Layer V pyramidal cell model with reduced morphology (Mäki-Marttunen et al 2018) [Model]
• Cortical Layer 5b pyr. cell with [Na+]i mechanisms, from Hay et al 2011 (Zylbertal et al 2017) [Model]

Hay E, Schürmann F, Markram H, Segev I. (2013). Preserving axosomatic spiking features despite diverse dendritic morphology. Journal of neurophysiology. 109 [PubMed]

• Preserving axosomatic spiking features despite diverse dendritic morphology (Hay et al., 2013) [Model]

Hu W et al. (2009). Distinct contributions of Na(v)1.6 and Na(v)1.2 in action potential initiation and backpropagation. Nature neuroscience. 12 [PubMed]

• Action Potential initiation and backpropagation in Neocortical L5 Pyramidal Neuron (Hu et al. 2009) [Model]

Kole MH et al. (2008). Action potential generation requires a high sodium channel density in the axon initial segment. Nature neuroscience. 11 [PubMed]

• Na+ channel dependence of AP initiation in cortical pyramidal neuron (Kole et al. 2008) [Model]

Köndgen H et al. (2008). The dynamical response properties of neocortical neurons to temporally modulated noisy inputs in vitro. Cerebral cortex (New York, N.Y. : 1991). 18 [PubMed]

• Response properties of neocort. neurons to temporally modulated noisy inputs (Koendgen et al. 2008) [Model]

McCormick DA, Shu Y, Yu Y. (2007). Neurophysiology: Hodgkin and Huxley model--still standing? Nature. 445 [PubMed]

• AP back-prop. explains threshold variability and rapid rise (McCormick et al. 2007, Yu et al. 2008) [Model]

Meeks JP, Mennerick S. (2007). Action potential initiation and propagation in CA3 pyramidal axons. Journal of neurophysiology. 97 [PubMed]

Mercer JN, Chan CS, Tkatch T, Held J, Surmeier DJ. (2007). Nav1.6 sodium channels are critical to pacemaking and fast spiking in globus pallidus neurons. The Journal of neuroscience : the official journal of the Society for Neuroscience. 27 [PubMed]

• Nav1.6 sodium channel model in globus pallidus neurons (Mercer et al. 2007) [Model]

Michalikova M, Remme MW, Kempter R. (2017). Spikelets in Pyramidal Neurons: Action Potentials Initiated in the Axon Initial Segment That Do Not Activate the Soma. PLoS computational biology. 13 [PubMed]

• Spikelet generation and AP initiation in a L5 neocortical pyr neuron (Michalikova et al. 2017) Fig 1 [Model]
• Spikelet generation and AP initiation in a simplified pyr neuron (Michalikova et al. 2017) Fig 3 [Model]

Moubarak E et al. (2019). Robustness to Axon Initial Segment Variation Is Explained by Somatodendritic Excitability in Rat Substantia Nigra Dopaminergic Neurons. The Journal of neuroscience : the official journal of the Society for Neuroscience. 39 [PubMed]

• Dopaminergic subtantia nigra neuron (Moubarak et al 2019) [Model]

Munro E, Kopell N. (2012). Subthreshold somatic voltage in neocortical pyramidal cells can control whether spikes propagate from the axonal plexus to axon terminals: a model study. Journal of neurophysiology. 107 [PubMed]

• Neocort. pyramidal cells subthreshold somatic voltage controls spike propagation (Munro Kopell 2012) [Model]

Platkiewicz J, Brette R. (2011). Impact of fast sodium channel inactivation on spike threshold dynamics and synaptic integration. PLoS computational biology. 7 [PubMed]

• Impact of fast Na channel inact. on AP threshold & synaptic integration (Platkiewicz & Brette 2011) [Model]

Popovic MA, Gao X, Carnevale NT, Zecevic D. (2014). Cortical dendritic spine heads are not electrically isolated by the spine neck from membrane potential signals in parent dendrites. Cerebral cortex (New York, N.Y. : 1991). 24 [PubMed]

Royeck M et al. (2008). Role of axonal NaV1.6 sodium channels in action potential initiation of CA1 pyramidal neurons. Journal of neurophysiology. 100 [PubMed]

• Axonal NaV1.6 Sodium Channels in AP Initiation of CA1 Pyramidal Neurons (Royeck et al. 2008) [Model]

Shu Y, Duque A, Yu Y, Haider B, McCormick DA. (2007). Properties of action-potential initiation in neocortical pyramidal cells: evidence from whole cell axon recordings. Journal of neurophysiology. 97 [PubMed]

• Intracortical synaptic potential modulation by presynaptic somatic potential (Shu et al. 2006, 2007) [Model]

Shu Y, Yu Y, Yang J, McCormick DA. (2007). Selective control of cortical axonal spikes by a slowly inactivating K+ current. Proceedings of the National Academy of Sciences of the United States of America. 104 [PubMed]

• Selective control of cortical axonal spikes by a slowly inactivating K+ current (Shu et al. 2007) [Model]

Singh C, Levy WB. (2017). A consensus layer V pyramidal neuron can sustain interpulse-interval coding. PloS one. 12 [PubMed]

• Stochastic layer V pyramidal neuron: interpulse interval coding and noise (Singh & Levy 2017) [Model]

Telenczuk M, Fontaine B, Brette R. (2017). The basis of sharp spike onset in standard biophysical models. PloS one. 12 [PubMed]

• The basis of sharp spike onset in standard biophysical models (Telenczuk et al 2017) [Model]

Teleńczuk M, Brette R, Destexhe A, Teleńczuk B. (2018). Contribution of the Axon Initial Segment to Action Potentials Recorded Extracellularly. eNeuro. 5 [PubMed]

• Contribution of the axon initial segment to APs recorded extracellularly (Telenczuk et al 2018) [Model]

Vascak M, Sun J, Baer M, Jacobs KM, Povlishock JT. (2017). Mild Traumatic Brain Injury Evokes Pyramidal Neuron Axon Initial Segment Plasticity and Diffuse Presynaptic Inhibitory Terminal Loss. Frontiers in cellular neuroscience. 11 [PubMed]

Wimmer VC et al. (2010). Axon initial segment dysfunction in a mouse model of genetic epilepsy with febrile seizures plus. The Journal of clinical investigation. 120 [PubMed]

• Complex CA1-neuron to study AP initiation (Wimmer et al. 2010) [Model]

Yu Y, Shu Y, McCormick DA. (2008). Cortical action potential backpropagation explains spike threshold variability and rapid-onset kinetics. The Journal of neuroscience : the official journal of the Society for Neuroscience. 28 [PubMed]

• AP back-prop. explains threshold variability and rapid rise (McCormick et al. 2007, Yu et al. 2008) [Model]

Zemel BM et al. (2021). Resurgent Na+ currents promote ultrafast spiking in projection neurons that drive fine motor control Nature communications. 12 [PubMed]

• Resurgent sodium transient current in zebra finch RA (Zemel et al., 2021) [Model]

Öz P, Huang M, Wolf F. (2015). Action potential initiation in a multi-compartmental model with cooperatively gating Na channels in the axon initial segment. Journal of computational neuroscience. 39 [PubMed]

• MCCAIS model (multicompartmental cooperative AIS) (Öz et al 2015) [Model]