Almog M, Korngreen A. (2014). A Quantitative Description of Dendritic Conductances and Its Application to Dendritic Excitation in Layer 5 Pyramidal Neurons The Journal of neuroscience : the official journal of the Society for Neuroscience. 34 [PubMed]

• Ionic mechanisms of dendritic spikes (Almog and Korngreen 2014) [Model]

Bahl A, Stemmler MB, Herz AV, Roth A. (2012). Automated optimization of a reduced layer 5 pyramidal cell model based on experimental data. Journal of neuroscience methods. 210 [PubMed]

• A set of reduced models of layer 5 pyramidal neurons (Bahl et al. 2012) [Model]

Ben-Shalom R et al. (2022). NeuroGPU: Accelerating multi-compartment, biophysically detailed neuron simulations on GPUs Journal of neuroscience methods. 366 [PubMed]

• NeuroGPU example on L5_TTPC1_cADpyr232_1 (Ben-Shalom 2022)(Ramaswamy et al., 2015) [Model]

Gurkiewicz M, Korngreen A, Waxman SG, Lampert A. (2011). Kinetic modeling of Nav1.7 provides insight into erythromelalgia-associated F1449V mutation. Journal of neurophysiology. 105 [PubMed]

• HMM of Nav1.7 WT and F1449V (Gurkiewicz et al. 2011) [Model]

Hallermann S, de Kock CP, Stuart GJ, Kole MH. (2012). State and location dependence of action potential metabolic cost in cortical pyramidal neurons. Nature neuroscience. 15 [PubMed]

• State and location dependence of action potential metabolic cost (Hallermann et al., 2012) [Model]

Hay E, Hill S, Schürmann F, Markram H, Segev I. (2011). Models of neocortical layer 5b pyramidal cells capturing a wide range of dendritic and perisomatic active properties. PLoS computational biology. 7 [PubMed]

• L5b PC model constrained for BAC firing and perisomatic current step firing (Hay et al., 2011) [Model]
• Layer V pyramidal cell model with reduced morphology (Mäki-Marttunen et al 2018) [Model]
• Cortical Layer 5b pyr. cell with [Na+]i mechanisms, from Hay et al 2011 (Zylbertal et al 2017) [Model]

Jȩdrzejewski-Szmek Z, Abrahao KP, Jȩdrzejewska-Szmek J, Lovinger DM, Blackwell KT. (2018). Parameter Optimization Using Covariance Matrix Adaptation-Evolutionary Strategy (CMA-ES), an Approach to Investigate Differences in Channel Properties Between Neuron Subtypes. Frontiers in neuroinformatics. 12 [PubMed]

• Parameter optimization using CMA-ES (Jedrzejewski-Szmek et al 2018) [Model]

Mäki-Marttunen T et al. (2018). A stepwise neuron model fitting procedure designed for recordings with high spatial resolution: Application to layer 5 pyramidal cells. Journal of neuroscience methods. 293 [PubMed]

• Layer V pyramidal cell model with reduced morphology (Mäki-Marttunen et al 2018) [Model]

Pashut T et al. (2011). Mechanisms of magnetic stimulation of central nervous system neurons. PLoS computational biology. 7 [PubMed]

• Mechanisms of magnetic stimulation of central nervous system neurons (Pashut et al. 2011) [Model]

Rich S, Moradi Chameh H, Sekulic V, Valiante TA, Skinner FK. (2021). Modeling Reveals Human-Rodent Differences in H-Current Kinetics Influencing Resonance in Cortical Layer 5 Neurons. Cerebral cortex (New York, N.Y. : 1991). 31 [PubMed]

• Human Cortical L5 Pyramidal Cell (Rich et al. 2021) [Model]

Ujfalussy BB, Makara JK, Lengyel M, Branco T. (2018). Global and Multiplexed Dendritic Computations under In Vivo-like Conditions. Neuron. 100 [PubMed]

• Global and multiplexed dendritic computations under in vivo-like conditions (Ujfalussy et al 2018) [Model]