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• CA3 Radiatum/Lacunosum-Moleculare interneuron, Ih (Anderson et al. 2011) [Model]

Aussel A, Buhry L, Tyvaert L, Ranta R. (2018). A detailed anatomical and mathematical model of the hippocampal formation for the generation of sharp-wave ripples and theta-nested gamma oscillations. Journal of computational neuroscience. 45 [PubMed]

• Model of the hippocampus over the sleep-wake cycle using Hodgkin-Huxley neurons (Aussel et al 2018) [Model]

Baker JL, Olds JL. (2007). Theta phase precession emerges from a hybrid computational model of a CA3 place cell. Cognitive neurodynamics. 1 [PubMed]

• Theta phase precession in a model CA3 place cell (Baker and Olds 2007) [Model]

Bendels MH, Leibold C. (2007). Generation of theta oscillations by weakly coupled neural oscillators in the presence of noise. Journal of computational neuroscience. 22 [PubMed]

Berzhanskaya J, Chernyy N, Gluckman BJ, Schiff SJ, Ascoli GA. (2013). Modulation of hippocampal rhythms by subthreshold electric fields and network topology. Journal of computational neuroscience. 34 [PubMed]

• Modulation of hippocampal rhythms by electric fields and network topology (Berzhanskaya et al. 2013) [Model]

Booth V, Poe GR. (2006). Input source and strength influences overall firing phase of model hippocampal CA1 pyramidal cells during theta: relevance to REM sleep reactivation and memory consolidation. Hippocampus. 16 [PubMed]

Budd JM. (2005). Theta oscillations by synaptic excitation in a neocortical circuit model. Proceedings. Biological sciences. 272 [PubMed]

Castro L, Aguiar P. (2012). Phase precession through acceleration of local theta rhythm: a biophysical model for the interaction between place cells and local inhibitory neurons. Journal of computational neuroscience. 33 [PubMed]

• Phase precession through acceleration of local theta rhythm (Castro & Aguiar 2011) [Model]

Cutsuridis V, Cobb S, Graham BP. (2010). Encoding and retrieval in a model of the hippocampal CA1 microcircuit. Hippocampus. 20 [PubMed]

• Encoding and retrieval in a model of the hippocampal CA1 microcircuit (Cutsuridis et al. 2009) [Model]

Cutsuridis V, Poirazi P. (2015). A computational study on how theta modulated inhibition can account for the long temporal windows in the entorhinal-hippocampal loop. Neurobiology of learning and memory. 120 [PubMed]

• Long time windows from theta modulated inhib. in entorhinal–hippo. loop (Cutsuridis & Poirazi 2015) [Model]

Dudman JT, Nolan MF. (2009). Stochastically gating ion channels enable patterned spike firing through activity-dependent modulation of spike probability. PLoS computational biology. 5 [PubMed]

Ferguson KA et al. (2015). Network models provide insights into how oriens-lacunosum-moleculare and bistratified cell interactions influence the power of local hippocampal CA1 theta oscillations. Frontiers in systems neuroscience. 9 [PubMed]

• CA1 SOM+ (OLM) hippocampal interneuron (Ferguson et al. 2015) [Model]

Gandolfi D et al. (2022). A realistic morpho-anatomical connection strategy for modelling full-scale point-neuron microcircuits Scientific reports. 12 [PubMed]

• Scaffold model of mouse CA1 hippocampus. (Gandolfi et al 2022) [Model]

Gloveli T et al. (2005). Orthogonal arrangement of rhythm-generating microcircuits in the hippocampus. Proceedings of the National Academy of Sciences of the United States of America. 102 [PubMed]

• Gamma and theta rythms in biophysical models of hippocampus circuits (Kopell et al. 2011) [Model]

Haas JS, Dorval AD, White JA. (2007). Contributions of Ih to feature selectivity in layer II stellate cells of the entorhinal cortex. Journal of computational neuroscience. 22 [PubMed]

Hajós M, Hoffmann WE, Orbán G, Kiss T, Erdi P. (2004). Modulation of septo-hippocampal Theta activity by GABAA receptors: an experimental and computational approach. Neuroscience. 126 [PubMed]

• Modulation of septo-hippocampal theta activity by GABAA receptors (Hajos et al. 2004) [Model]

Hasselmo ME, Eichenbaum H. (2005). Hippocampal mechanisms for the context-dependent retrieval of episodes. Neural networks : the official journal of the International Neural Network Society. 18 [PubMed]

• Hippocampal context-dependent retrieval (Hasselmo and Eichenbaum 2005) [Model]

Hu H, Vervaeke K, Storm JF. (2002). Two forms of electrical resonance at theta frequencies, generated by M-current, h-current and persistent Na+ current in rat hippocampal pyramidal cells. The Journal of physiology. 545 [PubMed]

Hummos A, Nair SS. (2017). An integrative model of the intrinsic hippocampal theta rhythm. PloS one. 12 [PubMed]

• Role for short term plasticity and OLM cells in containing spread of excitation (Hummos et al 2014) [Model]

Jalil S, Grigull J, Skinner FK. (2004). Novel bursting patterns emerging from model inhibitory networks with synaptic depression. Journal of computational neuroscience. 17 [PubMed]

Komendantov AO, Ascoli GA. (2009). Dendritic excitability and neuronal morphology as determinants of synaptic efficacy. Journal of neurophysiology. 101 [PubMed]

Lawrence JJ et al. (2006). Somatodendritic Kv7/KCNQ/M channels control interspike interval in hippocampal interneurons. The Journal of neuroscience : the official journal of the Society for Neuroscience. 26 [PubMed]

• O-LM interneuron model (Lawrence et al. 2006) [Model]

Marcelin B et al. (2009). h channel-dependent deficit of theta oscillation resonance and phase shift in temporal lobe epilepsy. Neurobiology of disease. 33 [PubMed]

• CA1 pyramidal neuron: h channel-dependent deficit of theta oscill. resonance (Marcelin et al. 2008) [Model]

Mateos-Aparicio P, Murphy R, Storm JF. (2014). Complementary functions of SK and Kv7/M potassium channels in excitability control and synaptic integration in rat hippocampal dentate granule cells. The Journal of physiology. 592 [PubMed]

• Dentate granule cell: mAHP & sAHP; SK & Kv7/M channels (Mateos-Aparicio et al., 2014) [Model]

McCauley JP et al. (2020). Circadian Modulation of Neurons and Astrocytes Controls Synaptic Plasticity in Hippocampal Area CA1. Cell reports. 33 [PubMed]

• Circadian rhythmicity shapes astrocyte morphology and neuronal function in CA1 (McCauley et al 2020) [Model]

Migliore M, De Simone G, Migliore R. (2015). Effect of the initial synaptic state on the probability to induce long-term potentiation and depression. Biophysical journal. 108 [PubMed]

• Effect of the initial synaptic state on the probability to induce LTP and LTD (Migliore et al. 2015) [Model]

Minneci F et al. (2007). Signaling properties of stratum oriens interneurons in the hippocampus of transgenic mice expressing EGFP in a subset of somatostatin-containing cells. Hippocampus. 17 [PubMed]

• CA1 oriens alveus interneurons: signaling properties (Minneci et al. 2007) [Model]

Monaco JD, Knierim JJ, Zhang K. (2011). Sensory feedback, error correction, and remapping in a multiple oscillator model of place cell activity Frontiers in computational neuroscience. 5 [PubMed]

• Sensory feedback in an oscillatory interference model of place cell activity (Monaco et al. 2011) [Model]

Narayanan R, Johnston D. (2007). Long-term potentiation in rat hippocampal neurons is accompanied by spatially widespread changes in intrinsic oscillatory dynamics and excitability. Neuron. 56 [PubMed]

• Resonance properties through Chirp stimulus responses (Narayanan Johnston 2007, 2008) [Model]
• Chirp stimulus responses in a morphologically realistic model (Narayanan and Johnston, 2007) [Model]

Narayanan R, Johnston D. (2008). The h channel mediates location dependence and plasticity of intrinsic phase response in rat hippocampal neurons. The Journal of neuroscience : the official journal of the Society for Neuroscience. 28 [PubMed]

• Resonance properties through Chirp stimulus responses (Narayanan Johnston 2007, 2008) [Model]

Norman KA, Newman E, Detre G, Polyn S. (2006). How inhibitory oscillations can train neural networks and punish competitors. Neural computation. 18 [PubMed]

Nörenberg A, Hu H, Vida I, Bartos M, Jonas P. (2010). Distinct nonuniform cable properties optimize rapid and efficient activation of fast-spiking GABAergic interneurons. Proceedings of the National Academy of Sciences of the United States of America. 107 [PubMed]

• Detailed passive cable model of Dentate Gyrus Basket Cells (Norenberg et al. 2010) [Model]

Pastoll H, Solanka L, van Rossum MC, Nolan MF. (2013). Feedback inhibition enables theta-nested gamma oscillations and grid firing fields. Neuron. 77 [PubMed]

• An attractor network model of grid cells and theta-nested gamma oscillations (Pastoll et al 2013) [Model]

Pernelle G, Nicola W, Clopath C. (2018). Gap junction plasticity as a mechanism to regulate network-wide oscillations. PLoS computational biology. 14 [PubMed]

• Gap junction plasticity as a mechanism to regulate network-wide oscillations (Pernelle et al 2018) [Model]

Robbins KA, Senseman DM. (2004). Extracting wave structure from biological data with application to responses in turtle visual cortex. Journal of computational neuroscience. 16 [PubMed]

• Turtle visual cortex model (Nenadic et al. 2003, Wang et al. 2005, Wang et al. 2006) [Model]

Rotstein HG et al. (2005). Slow and fast inhibition and an H-current interact to create a theta rhythm in a model of CA1 interneuron network. Journal of neurophysiology. 94 [PubMed]

Saraga F, Wu CP, Zhang L, Skinner FK. (2003). Active dendrites and spike propagation in multi-compartment models of oriens-lacunosum/moleculare hippocampal interneurons. The Journal of physiology. 552 [PubMed]

• Active dendrites and spike propagation in a hippocampal interneuron (Saraga et al 2003) [Model]

Shuman T et al. (2020). Breakdown of spatial coding and interneuron synchronization in epileptic mice. Nature neuroscience. 23 [PubMed]

• CA1 network model: interneuron contributions to epileptic deficits (Shuman et al 2020) [Model]

Sinha M, Narayanan R. (2015). HCN channels enhance spike phase coherence and regulate the phase of spikes and LFPs in the theta-frequency range. Proceedings of the National Academy of Sciences of the United States of America. 112 [PubMed]

• Subthreshold conductances regulate theta-frequency LFPs and spike phase (Sinha and Narayanan, 2015) [Model]

Świetlik D, Białowąs J, Kusiak A, Cichońska D. (2018). A computational simulation of long-term synaptic potentiation inducing protocol processes with model of CA3 hippocampal microcircuit. Folia morphologica. 77 [PubMed]