Abbott LF, Dayan P. (2001). Theoretical Neuroscience. Computational and Mathematical Modeling of Neural Systems.
Atallah BV, Scanziani M. (2009). Instantaneous modulation of gamma oscillation frequency by balancing excitation with inhibition. Neuron. 62 [PubMed]
Bower JM, Beeman D. (1998). The Book Of Genesis: Exploring Realistic Neural Models With The General Neural Simulation System.
Bozkus Z, El-Ghazawi T, Kayraklioglu E. (2015). Accelerating brain simulations on graphical processing units IEEE International Conference on Computer and Information Technology; Ubiquitous Computing and Communications; Dependable, Autonomic and Secure Computing; Pervasive Intelligence and Computing (CIT/IUCC/DASC/PICOM).
Brette R, Gerstner W. (2005). Adaptive exponential integrate-and-fire model as an effective description of neuronal activity. Journal of neurophysiology. 94 [PubMed]
Brette R et al. (2007). Simulation of networks of spiking neurons: a review of tools and strategies. Journal of computational neuroscience. 23 [PubMed]
Brunel N, Wang XJ. (2003). What determines the frequency of fast network oscillations with irregular neural discharges? I. Synaptic dynamics and excitation-inhibition balance. Journal of neurophysiology. 90 [PubMed]
Cannon RC, O'Donnell C, Nolan MF. (2010). Stochastic ion channel gating in dendritic neurons: morphology dependence and probabilistic synaptic activation of dendritic spikes. PLoS computational biology. 6 [PubMed]
Carnevale NT et al. (2013). Introducing the Neuroscience Gateway 2013 IWSG, volume 993 of CEUR Workshop Proceedings, CEUR-WS.org,. 993
Collins FS, Insel TR, Landis SC. (2013). The NIH BRAIN initiative Science. 340
Cornelis H, Rodriguez AL, Coop AD, Bower JM. (2012). Python as a federation tool for GENESIS 3.0. PloS one. 7 [PubMed]
Davison AP et al. (2008). PyNN: A Common Interface for Neuronal Network Simulators. Frontiers in neuroinformatics. 2 [PubMed]
Destexhe A, Bal T, McCormick DA, Sejnowski TJ. (1996). Ionic mechanisms underlying synchronized oscillations and propagating waves in a model of ferret thalamic slices. Journal of neurophysiology. 76 [PubMed]
Diesmann M, Gewaltig M-O. (2007). NEST (Neural Simulation Tool) Scholarpedia. 2
Drewes R, Zou Q, Goodman PH. (2009). Brainlab: A Python Toolkit to Aid in the Design, Simulation, and Analysis of Spiking Neural Networks with the NeoCortical Simulator. Frontiers in neuroinformatics. 3 [PubMed]
Eppler JM, Helias M, Muller E, Diesmann M, Gewaltig MO. (2008). PyNEST: A Convenient Interface to the NEST Simulator. Frontiers in neuroinformatics. 2 [PubMed]
Ermentrout B. (1996). Type I membranes, phase resetting curves, and synchrony. Neural computation. 8 [PubMed]
Ermentrout GB. (2002). Simulating, Analyzing, and Animating Dynamical System: A Guide to XPPAUT for Researchers and Students Society for Industrial and Applied Mathematics (SIAM).
Et AL et al. (2008). Darpa’s {HPCS} program: history, models, tools, languages Advances in COMPUTERS, High Performance Computing, Volume 72 of Advances in Computers.
Fitzhugh R. (1961). Impulses and Physiological States in Theoretical Models of Nerve Membrane. Biophysical journal. 1 [PubMed]
Gleeson P et al. (2010). NeuroML: a language for describing data driven models of neurons and networks with a high degree of biological detail. PLoS computational biology. 6 [PubMed]
Gleeson P, Steuber V, Silver RA. (2007). neuroConstruct: a tool for modeling networks of neurons in 3D space. Neuron. 54 [PubMed]
Goodman D, Brette R. (2008). Brian: a simulator for spiking neural networks in python. Frontiers in neuroinformatics. 2 [PubMed]
Goodman DF, Brette R. (2009). The brian simulator. Frontiers in neuroscience. 3 [PubMed]
HODGKIN AL, HUXLEY AF. (1952). A quantitative description of membrane current and its application to conduction and excitation in nerve. The Journal of physiology. 117 [PubMed]
Hahne J et al. (2015). A unified framework for spiking and gap-junction interactions in distributed neuronal network simulations. Frontiers in neuroinformatics. 9 [PubMed]
Hepburn I, Chen W, Wils S, De Schutter E. (2012). STEPS: efficient simulation of stochastic reaction-diffusion models in realistic morphologies. BMC systems biology. 6 [PubMed]
Hindmarsh AC et al. (2005). SUNDIALS: Suite of nonlinear and differential-algebraic equation solvers ACM Trans Math Software. 31
Hines M et al. (2016). Leveraging a Cluster-Booster Architecture for Brain-Scale Simulations.
Hines ML, Carnevale NT. (1997). The NEURON simulation environment. Neural computation. 9 [PubMed]
Hines ML, Carnevale NT. (2006). The NEURON Book.
Hines ML, Carnevale NT. (2008). Translating network models to parallel hardware in NEURON. Journal of neuroscience methods. 169 [PubMed]
Hines ML, Davison AP, Muller E. (2009). NEURON and Python. Frontiers in neuroinformatics. 3 [PubMed]
Hines ML, Eichner H, Schürmann F. (2008). Neuron splitting in compute-bound parallel network simulations enables runtime scaling with twice as many processors. Journal of computational neuroscience. 25 [PubMed]
Hines ML, Morse T, Migliore M, Carnevale NT, Shepherd GM. (2004). ModelDB: A Database to Support Computational Neuroscience. Journal of computational neuroscience. 17 [PubMed]
Iyer R, Tullsen D. (2015). Heterogeneous computing [guest editors’ introduction] IEEE Micro. 35
Izhikevich EM. (2003). Simple model of spiking neurons. IEEE transactions on neural networks. 14 [PubMed]
Jarsky T, Roxin A, Kath WL, Spruston N. (2005). Conditional dendritic spike propagation following distal synaptic activation of hippocampal CA1 pyramidal neurons. Nature neuroscience. 8 [PubMed]
Kistler WM, Gerstner W. (2002). Spiking neuron models.
Lind RK, Vairavan K. (1989). An experimental investigation of software metrics and their relationship to software development effort IEEE Trans. Softw. Eng.. 15
Mainen ZF, Sejnowski TJ. (1996). Influence of dendritic structure on firing pattern in model neocortical neurons. Nature. 382 [PubMed]
Markin SN, Tikidji-Hamburyan RA. (2008). Neurocad – the modular simulation environment for effective biologically plausible neuromodeling BMC Neurosci.. 9
Markram H. (2006). The blue brain project. Nature reviews. Neuroscience. 7 [PubMed]
Markram H. (2012). The human brain project. Scientific American. 306 [PubMed]
Migliore M, Cannia C, Lytton WW, Markram H, Hines ML. (2006). Parallel network simulations with NEURON. Journal of computational neuroscience. 21 [PubMed]
Morris C, Lecar H. (1981). Voltage oscillations in the barnacle giant muscle fiber. Biophysical journal. 35 [PubMed]
Morrison A et al. (2016). Nestml: a modeling language for spiking neurons Modellierung Conference Volume 254 of LNI, Karlsruhe.
Muller E et al. (2015). Python in neuroscience. Frontiers in neuroinformatics. 9 [PubMed]
Pinsky PF, Rinzel J. (1994). Intrinsic and network rhythmogenesis in a reduced Traub model for CA3 neurons. Journal of computational neuroscience. 1 [PubMed]
Rinzel J, Ermentrout B. (1998). Analysis of neural excitability and oscillations. Methods In Neuronal Modeling 2nd Edition.
Segev I, Koch C. (1998). Methods In Neuronal Modeling.
Soltesz I, Staley K. (2008). Computational neuroscience in epilepsy.
Tikidji-Hamburyan RA, El-Ghazawi TA, Triplett JW. (2016). Novel Models of Visual Topographic Map Alignment in the Superior Colliculus. PLoS computational biology. 12 [PubMed]
Tikidji-Hamburyan RA, Martínez JJ, White JA, Canavier CC. (2015). Resonant Interneurons Can Increase Robustness of Gamma Oscillations. The Journal of neuroscience : the official journal of the Society for Neuroscience. 35 [PubMed]
Vitay J, Dinkelbach HÜ, Hamker FH. (2015). ANNarchy: a code generation approach to neural simulations on parallel hardware. Frontiers in neuroinformatics. 9 [PubMed]
Yao Y, Cantonnet F, Zahran M, El-Ghazawi T. (2004). Productivity analysis of the UPC language Proceedings of the 18th International Parallel and Distributed Processing Symposium.
Yavuz E, Turner J, Nowotny T. (2016). GeNN: a code generation framework for accelerated brain simulations. Scientific reports. 6 [PubMed]
Zenke F, Gerstner W. (2014). Limits to high-speed simulations of spiking neural networks using general-purpose computers. Frontiers in neuroinformatics. 8 [PubMed]