Biophysically realistic neuron models for simulation of cortical stimulation (Aberra et al. 2018)


Aberra AS, Peterchev AV, Grill WM. (2018). Biophysically realistic neuron models for simulation of cortical stimulation. Journal of neural engineering. 15 [PubMed]

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References and models cited by this paper

Arlotti M, Rahman A, Minhas P, Bikson M. (2012). Axon terminal polarization induced by weak uniform DC electric fields: a modeling study. Annual International Conference of the IEEE Engineering in Medicine and Biology Society. IEEE Engineering in Medicine and Biology Society. Annual International Conference. 2012 [PubMed]

Aroniadou VA, Keller A. (1993). The patterns and synaptic properties of horizontal intracortical connections in the rat motor cortex. Journal of neurophysiology. 70 [PubMed]

Asanuma H, Arnold A, Zarzecki P. (1976). Further study on the excitation of pyramidal tract cells by intracortical microstimulation. Experimental brain research. 26 [PubMed]

Baranauskas G, David Y, Fleidervish IA. (2013). Spatial mismatch between the Na+ flux and spike initiation in axon initial segment. Proceedings of the National Academy of Sciences of the United States of America. 110 [PubMed]

Basser PJ. (1993). Cable equation for a myelinated axon derived from its microstructure. Medical & biological engineering & computing. 31 Suppl [PubMed]

Battefeld A, Tran BT, Gavrilis J, Cooper EC, Kole MH. (2014). Heteromeric Kv7.2/7.3 channels differentially regulate action potential initiation and conduction in neocortical myelinated axons. The Journal of neuroscience : the official journal of the Society for Neuroscience. 34 [PubMed]

Berret E, Kim SE, Lee SY, Kushmerick C, Kim JH. (2016). Functional and structural properties of ion channels at the nerve terminal depends on compact myelin. The Journal of physiology. 594 [PubMed]

Bikson M, Dmochowski J, Rahman A. (2013). The "quasi-uniform" assumption in animal and computational models of non-invasive electrical stimulation. Brain stimulation. 6 [PubMed]

Bikson M et al. (2004). Effects of uniform extracellular DC electric fields on excitability in rat hippocampal slices in vitro. The Journal of physiology. 557 [PubMed]

Bossetti CA, Birdno MJ, Grill WM. (2008). Analysis of the quasi-static approximation for calculating potentials generated by neural stimulation. Journal of neural engineering. 5 [PubMed]

Caldwell JH, Schaller KL, Lasher RS, Peles E, Levinson SR. (2000). Sodium channel Na(v)1.6 is localized at nodes of ranvier, dendrites, and synapses. Proceedings of the National Academy of Sciences of the United States of America. 97 [PubMed]

Chakraborty D, Truong DQ, Bikson M, Kaphzan H. (2018). Neuromodulation of Axon Terminals. Cerebral cortex (New York, N.Y. : 1991). 28 [PubMed]

Chan CY, Hounsgaard J, Nicholson C. (1988). Effects of electric fields on transmembrane potential and excitability of turtle cerebellar Purkinje cells in vitro. The Journal of physiology. 402 [PubMed]

Colbert CM, Pan E. (2002). Ion channel properties underlying axonal action potential initiation in pyramidal neurons. Nature neuroscience. 5 [PubMed]

DeFelipe J, Conley M, Jones EG. (1986). Long-range focal collateralization of axons arising from corticocortical cells in monkey sensory-motor cortex. The Journal of neuroscience : the official journal of the Society for Neuroscience. 6 [PubMed]

Debanne D, Campanac E, Bialowas A, Carlier E, Alcaraz G. (2011). Axon physiology. Physiological reviews. 91 [PubMed]

Deitcher Y et al. (2017). Comprehensive Morpho-Electrotonic Analysis Shows 2 Distinct Classes of L2 and L3 Pyramidal Neurons in Human Temporal Cortex. Cerebral cortex (New York, N.Y. : 1991). 27 [PubMed]

Di Lazzaro V, Rothwell J, Capogna M. (2018). Noninvasive Stimulation of the Human Brain: Activation of Multiple Cortical Circuits. The Neuroscientist : a review journal bringing neurobiology, neurology and psychiatry. 24 [PubMed]

Di Lazzaro V, Ziemann U, Lemon RN. (2008). State of the art: Physiology of transcranial motor cortex stimulation. Brain stimulation. 1 [PubMed]

Dostrovsky JO et al. (2000). Microstimulation-induced inhibition of neuronal firing in human globus pallidus. Journal of neurophysiology. 84 [PubMed]

Druckmann S et al. (2007). A novel multiple objective optimization framework for constraining conductance-based neuron models by experimental data. Frontiers in neuroscience. 1 [PubMed]

Engel D, Jonas P. (2005). Presynaptic action potential amplification by voltage-gated Na+ channels in hippocampal mossy fiber boutons. Neuron. 45 [PubMed]

Eyal G, Mansvelder HD, de Kock CP, Segev I. (2014). Dendrites impact the encoding capabilities of the axon. The Journal of neuroscience : the official journal of the Society for Neuroscience. 34 [PubMed]

Eyal G et al. (2018). Human Cortical Pyramidal Neurons: From Spines to Spikes via Models. Frontiers in cellular neuroscience. 12 [PubMed]

Eyal G et al. (2016). Unique membrane properties and enhanced signal processing in human neocortical neurons. eLife. 5 [PubMed]

Fernandez FR, Rahsepar B, White JA. (2018). Differences in the Electrophysiological Properties of Mouse Somatosensory Layer 2/3 Neurons In Vivo and Slice Stem from Intrinsic Sources Rather than a Network-Generated High Conductance State. eNeuro. 5 [PubMed]

Fleidervish IA, Lasser-Ross N, Gutnick MJ, Ross WN. (2010). Na+ imaging reveals little difference in action potential-evoked Na+ influx between axon and soma. Nature neuroscience. 13 [PubMed]

Foust AJ, Yu Y, Popovic M, Zecevic D, McCormick DA. (2011). Somatic membrane potential and Kv1 channels control spike repolarization in cortical axon collaterals and presynaptic boutons. The Journal of neuroscience : the official journal of the Society for Neuroscience. 31 [PubMed]

GRAY EG. (1959). Axo-somatic and axo-dendritic synapses of the cerebral cortex: an electron microscope study. Journal of anatomy. 93 [PubMed]

Geeter ND, Dupré L, Crevecoeur G. (2016). Modeling transcranial magnetic stimulation from the induced electric fields to the membrane potentials along tractography-based white matter fiber tracts. Journal of neural engineering. 13 [PubMed]

Goodwin BD, Butson CR. (2015). Subject-Specific Multiscale Modeling to Investigate Effects of Transcranial Magnetic Stimulation. Neuromodulation : journal of the International Neuromodulation Society. 18 [PubMed]

Grill WM, Cantrell MB, Robertson MS. (2008). Antidromic propagation of action potentials in branched axons: implications for the mechanisms of action of deep brain stimulation. Journal of computational neuroscience. 24 [PubMed]

Gustafsson B, Jankowska E. (1976). Direct and indirect activation of nerve cells by electrical pulses applied extracellularly. The Journal of physiology. 258 [PubMed]

HESS A, YOUNG JZ. (1949). Correlation of internodal length and fibre diameter in the central nervous system. Nature. 164 [PubMed]

Harris KM, Claiborne B, Jacobs G. (2010). Reconstruction of neuronal morphology Computational Modeling Methods for Neuroscientists.

Hayut I, Fanselow EE, Connors BW, Golomb D. (2011). LTS and FS inhibitory interneurons, short-term synaptic plasticity, and cortical circuit dynamics. PLoS computational biology. 7 [PubMed]

Hentall ID. (1985). The membrane potential along an ideal axon in a radial electric field. Brain research. 336 [PubMed]

Hildebrand C, Remahl S, Persson H, Bjartmar C. (1993). Myelinated nerve fibres in the CNS. Progress in neurobiology. 40 [PubMed]

Hines ML, Carnevale NT. (1997). The NEURON simulation environment. Neural computation. 9 [PubMed]

Histed MH, Bonin V, Reid RC. (2009). Direct activation of sparse, distributed populations of cortical neurons by electrical microstimulation. Neuron. 63 [PubMed]

Huang H, Trussell LO. (2008). Control of presynaptic function by a persistent Na(+) current. Neuron. 60 [PubMed]

Huang Y et al. (2017). Measurements and models of electric fields in the in vivo human brain during transcranial electric stimulation. eLife. 6 [PubMed]

Huntley GW, Jones EG. (1991). Relationship of intrinsic connections to forelimb movement representations in monkey motor cortex: a correlative anatomic and physiological study. Journal of neurophysiology. 66 [PubMed]

Hursh JB. (1939). Conduction velocity and diameter of nerve fibers. American Journal of Physiology. 127

Hussin AT, Boychuk JA, Brown AR, Pittman QJ, Teskey GC. (2015). Intracortical Microstimulation (ICMS) Activates Motor Cortex Layer 5 Pyramidal Neurons Mainly Transsynaptically. Brain stimulation. 8 [PubMed]

Ilmoniemi RJ, Mäki H, Saari J, Salvador R, Miranda PC. (2016). The Frequency-Dependent Neuronal Length Constant in Transcranial Magnetic Stimulation. Frontiers in cellular neuroscience. 10 [PubMed]

Jankowska E, Padel Y, Tanaka R. (1975). The mode of activation of pyramidal tract cells by intracortical stimuli. The Journal of physiology. 249 [PubMed]

Kaiserman-Abramof IR, Peters A. (1972). Some aspects of the morphology of Betz cells in the cerebral cortex of the cat. Brain research. 43 [PubMed]

Kasper EM, Larkman AU, Lübke J, Blakemore C. (1994). Pyramidal neurons in layer 5 of the rat visual cortex. II. Development of electrophysiological properties. The Journal of comparative neurology. 339 [PubMed]

Kole MH et al. (2008). Action potential generation requires a high sodium channel density in the axon initial segment. Nature neuroscience. 11 [PubMed]

Kubota Y, Kamitani Y, Bhalodia VM, Shimojo S. (2001). A model of magnetic stimulation of neocortical neurons Neurocomputing. 38

Kudela P, Anderson WS. (2015). Computational Modeling of Subdural Cortical Stimulation: A Quantitative Spatiotemporal Analysis of Action Potential Initiation in a High-Density Multicompartment Model. Neuromodulation : journal of the International Neuromodulation Society. 18 [PubMed]

Lee DC, Grill WM. (2005). Polarization of a spherical cell in a nonuniform extracellular electric field. Annals of biomedical engineering. 33 [PubMed]

Lohmann H, Rörig B. (1994). Long-range horizontal connections between supragranular pyramidal cells in the extrastriate visual cortex of the rat. The Journal of comparative neurology. 344 [PubMed]

Lorincz A, Nusser Z. (2010). Molecular identity of dendritic voltage-gated sodium channels. Science (New York, N.Y.). 328 [PubMed]

Mainen ZF, Joerges J, Huguenard JR, Sejnowski TJ. (1995). A model of spike initiation in neocortical pyramidal neurons. Neuron. 15 [PubMed]

Mainen ZF, Sejnowski TJ. (1996). Influence of dendritic structure on firing pattern in model neocortical neurons. Nature. 382 [PubMed]

Major G, Larkum ME, Schiller J. (2013). Active properties of neocortical pyramidal neuron dendrites. Annual review of neuroscience. 36 [PubMed]

Markram H et al. (2015). Reconstruction and Simulation of Neocortical Microcircuitry. Cell. 163 [PubMed]

Markram H, Schurmann F, Hill S, Anwar H, Riachi I. (2009). An approach to capturing neuron morphological diversity Computational Modeling Methods for Neuroscientists.

McCormick DA, Prince DA. (1987). Post-natal development of electrophysiological properties of rat cerebral cortical pyramidal neurones. The Journal of physiology. 393 [PubMed]

McIntyre CC, Grill WM. (2001). Finite element analysis of the current-density and electric field generated by metal microelectrodes. Annals of biomedical engineering. 29 [PubMed]

McIntyre CC, Grill WM, Sherman DL, Thakor NV. (2004). Cellular effects of deep brain stimulation: model-based analysis of activation and inhibition. Journal of neurophysiology. 91 [PubMed]

Micheva KD et al. (2016). A large fraction of neocortical myelin ensheathes axons of local inhibitory neurons. eLife. 5 [PubMed]

Mohan H et al. (2015). Dendritic and Axonal Architecture of Individual Pyramidal Neurons across Layers of Adult Human Neocortex. Cerebral cortex (New York, N.Y. : 1991). 25 [PubMed]

Nagarajan SS, Durand DM, Warman EN. (1993). Effects of induced electric fields on finite neuronal structures: a simulation study. IEEE transactions on bio-medical engineering. 40 [PubMed]

Nieuwenhuys R. (2013). The myeloarchitectonic studies on the human cerebral cortex of the Vogt-Vogt school, and their significance for the interpretation of functional neuroimaging data. Brain structure & function. 218 [PubMed]

Nowak LG, Bullier J. (1998). Axons, but not cell bodies, are activated by electrical stimulation in cortical gray matter. I. Evidence from chronaxie measurements. Experimental brain research. 118 [PubMed]

Nowak LG, Bullier J. (1998). Axons, but not cell bodies, are activated by electrical stimulation in cortical gray matter. II. Evidence from selective inactivation of cell bodies and axon initial segments. Experimental brain research. 118 [PubMed]

Overstreet CK, Klein JD, Helms Tillery SI. (2013). Computational modeling of direct neuronal recruitment during intracortical microstimulation in somatosensory cortex. Journal of neural engineering. 10 [PubMed]

Pashut T et al. (2011). Mechanisms of magnetic stimulation of central nervous system neurons. PLoS computational biology. 7 [PubMed]

Plonsey R, Heppner DB. (1967). Considerations of quasi-stationarity in electrophysiological systems. The Bulletin of mathematical biophysics. 29 [PubMed]

Radman T, Ramos RL, Brumberg JC, Bikson M. (2009). Role of cortical cell type and morphology in subthreshold and suprathreshold uniform electric field stimulation in vitro. Brain stimulation. 2 [PubMed]

Rahman A et al. (2013). Cellular effects of acute direct current stimulation: somatic and synaptic terminal effects. The Journal of physiology. 591 [PubMed]

Ramaswamy S et al. (2015). The neocortical microcircuit collaboration portal: a resource for rat somatosensory cortex. Frontiers in neural circuits. 9 [PubMed]

Ranck JB. (1975). Which elements are excited in electrical stimulation of mammalian central nervous system: a review. Brain research. 98 [PubMed]

Rattay F. (1999). The basic mechanism for the electrical stimulation of the nervous system. Neuroscience. 89 [PubMed]

Rattay F, Aberham M. (1993). Modeling axon membranes for functional electrical stimulation. IEEE transactions on bio-medical engineering. 40 [PubMed]

Romand S, Wang Y, Toledo-Rodriguez M, Markram H. (2011). Morphological development of thick-tufted layer v pyramidal cells in the rat somatosensory cortex. Frontiers in neuroanatomy. 5 [PubMed]

Roth BJ. (1994). Mechanisms for electrical stimulation of excitable tissue. Critical reviews in biomedical engineering. 22 [PubMed]

Roth BJ, Basser PJ. (1990). A model of the stimulation of a nerve fiber by electromagnetic induction. IEEE transactions on bio-medical engineering. 37 [PubMed]

Rowan MJ, Tranquil E, Christie JM. (2014). Distinct Kv channel subtypes contribute to differences in spike signaling properties in the axon initial segment and presynaptic boutons of cerebellar interneurons. The Journal of neuroscience : the official journal of the Society for Neuroscience. 34 [PubMed]

Ruohonen J. (2003). Background physics for magnetic stimulation. Supplements to Clinical neurophysiology. 56 [PubMed]

Salvador R, Silva S, Basser PJ, Miranda PC. (2011). Determining which mechanisms lead to activation in the motor cortex: a modeling study of transcranial magnetic stimulation using realistic stimulus waveforms and sulcal geometry. Clinical neurophysiology : official journal of the International Federation of Clinical Neurophysiology. 122 [PubMed]

Schwark HD, Jones EG. (1989). The distribution of intrinsic cortical axons in area 3b of cat primary somatosensory cortex. Experimental brain research. 78 [PubMed]

Seo H, Schaworonkow N, Jun SC, Triesch J. (2016). A multi-scale computational model of the effects of TMS on motor cortex. F1000Research. 5 [PubMed]

Sloper JJ, Powell TP. (1979). A study of the axon initial segment and proximal axon of neurons in the primate motor and somatic sensory cortices. Philosophical transactions of the Royal Society of London. Series B, Biological sciences. 285 [PubMed]

Soares D et al. (2017). Expression of Kv3.1b potassium channel is widespread in macaque motor cortex pyramidal cells: A histological comparison between rat and macaque. The Journal of comparative neurology. 525 [PubMed]

Spain WJ, Schwindt PC, Crill WE. (1991). Two transient potassium currents in layer V pyramidal neurones from cat sensorimotor cortex. The Journal of physiology. 434 [PubMed]

Stedehouder J et al. (2017). Fast-spiking Parvalbumin Interneurons are Frequently Myelinated in the Cerebral Cortex of Mice and Humans. Cerebral cortex (New York, N.Y. : 1991). 27 [PubMed]

Stern S, Agudelo-Toro A, Rotem A, Moses E, Neef A. (2015). Chronaxie Measurements in Patterned Neuronal Cultures from Rat Hippocampus. PloS one. 10 [PubMed]

Stoney SD, Thompson WD, Asanuma H. (1968). Excitation of pyramidal tract cells by intracortical microstimulation: effective extent of stimulating current. Journal of neurophysiology. 31 [PubMed]

Tahayori B et al. (2014). Modelling extracellular electrical stimulation: part 4. Effect of the cellular composition of neural tissue on its spatio-temporal filtering properties. Journal of neural engineering. 11 [PubMed]

Tehovnik EJ, Slocum WM. (2013). Two-photon imaging and the activation of cortical neurons. Neuroscience. 245 [PubMed]

Tehovnik EJ, Slocum WM, Carvey CE, Schiller PH. (2005). Phosphene induction and the generation of saccadic eye movements by striate cortex. Journal of neurophysiology. 93 [PubMed]

Tehovnik EJ, Tolias AS, Sultan F, Slocum WM, Logothetis NK. (2006). Direct and indirect activation of cortical neurons by electrical microstimulation. Journal of neurophysiology. 96 [PubMed]

Testa-Silva G et al. (2014). High bandwidth synaptic communication and frequency tracking in human neocortex. PLoS biology. 12 [PubMed]

Tomasi S, Caminiti R, Innocenti GM. (2012). Areal differences in diameter and length of corticofugal projections. Cerebral cortex (New York, N.Y. : 1991). 22 [PubMed]

Tomassy GS et al. (2014). Distinct profiles of myelin distribution along single axons of pyramidal neurons in the neocortex. Science (New York, N.Y.). 344 [PubMed]

Tranchina D, Nicholson C. (1986). A model for the polarization of neurons by extrinsically applied electric fields. Biophysical journal. 50 [PubMed]

Vigneswaran G, Kraskov A, Lemon RN. (2011). Large identified pyramidal cells in macaque motor and premotor cortex exhibit "thin spikes": implications for cell type classification. The Journal of neuroscience : the official journal of the Society for Neuroscience. 31 [PubMed]

Vöröslakos M et al. (2018). Direct effects of transcranial electric stimulation on brain circuits in rats and humans. Nature communications. 9 [PubMed]

Wagner TA, Zahn M, Grodzinsky AJ, Pascual-Leone A. (2004). Three-dimensional head model simulation of transcranial magnetic stimulation. IEEE transactions on bio-medical engineering. 51 [PubMed]

Wang B, Aberra AS, Grill WM, Peterchev AV. (2018). Modified cable equation incorporating transverse polarization of neuronal membranes for accurate coupling of electric fields. Journal of neural engineering. 15 [PubMed]

Wang B, Grill WM, Peterchev AV. (2018). Coupling Magnetically Induced Electric Fields to Neurons: Longitudinal and Transverse Activation. Biophysical journal. 115 [PubMed]

Waxman SG. (1970). Closely spaced nodes of Ranvier in the teleost brain. Nature. 227 [PubMed]

Waxman SG. (1971). An ultrastructural study of the pattern of myelination of preterminal fibers in teleost oculomotor nuclei, electromotor nuclei, and spinal cord. Brain research. 27 [PubMed]

Waxman SG, Kocsis JD, Stys PK. (1995). The axon: structure, function and pathophysiology.

Weiss G. (1901). Sur la possibilite de rendre comparables entre eux les appareils servant a lexcitation electrique Arch Ital Biol. 35

Wongsarnpigoon A, Grill WM. (2012). Computer-based model of epidural motor cortex stimulation: effects of electrode position and geometry on activation of cortical neurons. Clinical neurophysiology : official journal of the International Federation of Clinical Neurophysiology. 123 [PubMed]

Wu T, Fan J, Lee KS, Li X. (2016). Cortical neuron activation induced by electromagnetic stimulation: a quantitative analysis via modelling and simulation. Journal of computational neuroscience. 40 [PubMed]

Yamashita A, Arikuni T. (2001). Axon trajectories in local circuits of the primary motor cortex in the macaque monkey (Macaca fuscata). Neuroscience research. 39 [PubMed]

Zhu JJ. (2000). Maturation of layer 5 neocortical pyramidal neurons: amplifying salient layer 1 and layer 4 inputs by Ca2+ action potentials in adult rat tuft dendrites. The Journal of physiology. 526 Pt 3 [PubMed]

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