Adams PR. (1992). The platonic neuron gets the hots. Current biology : CB. 2 [PubMed]

Alessandri-Haber N et al. (1999). Specific distribution of sodium channels in axons of rat embryo spinal motoneurones. The Journal of physiology. 518 [PubMed]

Andreasen M, Lambert JD. (1995). Regenerative properties of pyramidal cell dendrites in area CA1 of the rat hippocampus. The Journal of physiology. 483 ( Pt 2) [PubMed]

Angelides KJ, Elmer LW, Loftus D, Elson E. (1988). Distribution and lateral mobility of voltage-dependent sodium channels in neurons. The Journal of cell biology. 106 [PubMed]

Astman N, Gutnick MJ, Fleidervish IA. (1998). Activation of protein kinase C increases neuronal excitability by regulating persistent Na+ current in mouse neocortical slices. Journal of neurophysiology. 80 [PubMed]

Buhl EH et al. (1994). Physiological properties of anatomically identified axo-axonic cells in the rat hippocampus. Journal of neurophysiology. 71 [PubMed]

Carras PL, Coleman PA, Miller RF. (1992). Site of action potential initiation in amphibian retinal ganglion cells. Journal of neurophysiology. 67 [PubMed]

Catterall WA. (1981). Localization of sodium channels in cultured neural cells. The Journal of neuroscience : the official journal of the Society for Neuroscience. 1 [PubMed]

Chavez-Noriega LE, Halliwell JV, Bliss TV. (1990). A decrease in firing threshold observed after induction of the EPSP-spike (E-S) component of long-term potentiation in rat hippocampal slices. Experimental brain research. 79 [PubMed]

Cobb SR, Buhl EH, Halasy K, Paulsen O, Somogyi P. (1995). Synchronization of neuronal activity in hippocampus by individual GABAergic interneurons. Nature. 378 [PubMed]

Colbert CM, Johnston D. (1996). Axonal action-potential initiation and Na+ channel densities in the soma and axon initial segment of subicular pyramidal neurons. The Journal of neuroscience : the official journal of the Society for Neuroscience. 16 [PubMed]

Cooley JW, Dodge FA. (1973). Action Potential of the Motorneuron. IBM J Res Dev. 17

• Spinal Motor Neuron (Dodge, Cooley 1973) [Model]

EDWARDS C, OTTOSON D. (1958). The site of impulse initiation in a nerve cell of a crustacean stretch receptor. The Journal of physiology. 143 [PubMed]

Fariñas I, DeFelipe J. (1991). Patterns of synaptic input on corticocortical and corticothalamic cells in the cat visual cortex. II. The axon initial segment. The Journal of comparative neurology. 304 [PubMed]

Gogan P, Gueritaud JP, Tyc-Dumont S. (1983). Comparison of antidromic and orthodromic action potentials of identified motor axons in the cat's brain stem. The Journal of physiology. 335 [PubMed]

Golding NL, Spruston N. (1998). Dendritic sodium spikes are variable triggers of axonal action potentials in hippocampal CA1 pyramidal neurons. Neuron. 21 [PubMed]

Hines M. (1993). NEURON--a program for simulation of nerve equations. Neural Systems: Analysis And Modeling.

Hoffman DA, Magee JC, Colbert CM, Johnston D. (1997). K+ channel regulation of signal propagation in dendrites of hippocampal pyramidal neurons. Nature. 387 [PubMed]

Johnston D, Magee JC, Colbert CM, Cristie BR. (1996). Active properties of neuronal dendrites. Annual review of neuroscience. 19 [PubMed]

Kloosterman F, Peloquin P, Leung LS. (2001). Apical and basal orthodromic population spikes in hippocampal CA1 in vivo show different origins and patterns of propagation. Journal of neurophysiology. 86 [PubMed]

Koch C. (1999). Biophysics Of Computation: Information Processing in Single Neurons.

Lüscher HR, Larkum ME. (1998). Modeling action potential initiation and back-propagation in dendrites of cultured rat motoneurons. Journal of neurophysiology. 80 [PubMed]

Magee JC. (1998). Dendritic hyperpolarization-activated currents modify the integrative properties of hippocampal CA1 pyramidal neurons. The Journal of neuroscience : the official journal of the Society for Neuroscience. 18 [PubMed]

Mainen ZF, Joerges J, Huguenard JR, Sejnowski TJ. (1995). A model of spike initiation in neocortical pyramidal neurons. Neuron. 15 [PubMed]

• Spike Initiation in Neocortical Pyramidal Neurons (Mainen et al 1995) [Model]

Matsumoto E, Rosenbluth J. (1985). Plasma membrane structure at the axon hillock, initial segment and cell body of frog dorsal root ganglion cells. Journal of neurocytology. 14 [PubMed]

Mel BW. (1994). Information processing in dendritic trees. Neural Comput. 6

Moore JW, Stockbridge N, Westerfield M. (1983). On the site of impulse initiation in a neurone. The Journal of physiology. 336 [PubMed]

• Site of impulse initiation in a neuron (Moore et al 1983) [Model]

Moore JW, Westerfield M. (1983). Action potential propagation and threshold parameters in inhomogeneous regions of squid axons. The Journal of physiology. 336 [PubMed]

Palay SL, Sotelo C, Peters A, Orkand PM. (1968). The axon hillock and the initial segment. The Journal of cell biology. 38 [PubMed]

Rapp M, Yarom Y, Segev I. (1996). Modeling back propagating action potential in weakly excitable dendrites of neocortical pyramidal cells. Proceedings of the National Academy of Sciences of the United States of America. 93 [PubMed]

Rasband MN, Trimmer JS, Peles E, Levinson SR, Shrager P. (1999). K+ channel distribution and clustering in developing and hypomyelinated axons of the optic nerve. Journal of neurocytology. 28 [PubMed]

Regehr WG, Armstrong CM. (1994). Dendritic function. Where does it all begin? Current biology : CB. 4 [PubMed]

Shadlen MN, Newsome WT. (1998). The variable discharge of cortical neurons: implications for connectivity, computation, and information coding. The Journal of neuroscience : the official journal of the Society for Neuroscience. 18 [PubMed]

Spruston N, Schiller Y, Stuart G, Sakmann B. (1995). Activity-dependent action potential invasion and calcium influx into hippocampal CA1 dendrites. Science (New York, N.Y.). 268 [PubMed]

Stuart G, Schiller J, Sakmann B. (1997). Action potential initiation and propagation in rat neocortical pyramidal neurons. The Journal of physiology. 505 ( Pt 3) [PubMed]

Stuart GJ, Sakmann B. (1994). Active propagation of somatic action potentials into neocortical pyramidal cell dendrites. Nature. 367 [PubMed]

Svoboda K, Denk W, Kleinfeld D, Tank DW. (1997). In vivo dendritic calcium dynamics in neocortical pyramidal neurons. Nature. 385 [PubMed]

Turner RW, Meyers DE, Richardson TL, Barker JL. (1991). The site for initiation of action potential discharge over the somatodendritic axis of rat hippocampal CA1 pyramidal neurons. The Journal of neuroscience : the official journal of the Society for Neuroscience. 11 [PubMed]

Zecević D. (1996). Multiple spike-initiation zones in single neurons revealed by voltage-sensitive dyes. Nature. 381 [PubMed]

Aberra AS, Peterchev AV, Grill WM. (2018). Biophysically realistic neuron models for simulation of cortical stimulation. Journal of neural engineering. 15 [PubMed]

• Biophysically realistic neuron models for simulation of cortical stimulation (Aberra et al. 2018) [Model]

Arhem P, Klement G, Blomberg C. (2006). Channel density regulation of firing patterns in a cortical neuron model. Biophysical journal. 90 [PubMed]

Ashida G, Abe K, Funabiki K, Konishi M. (2007). Passive soma facilitates submillisecond coincidence detection in the owl's auditory system. Journal of neurophysiology. 97 [PubMed]

Bahl A, Stemmler MB, Herz AV, Roth A. (2012). Automated optimization of a reduced layer 5 pyramidal cell model based on experimental data. Journal of neuroscience methods. 210 [PubMed]

• A set of reduced models of layer 5 pyramidal neurons (Bahl et al. 2012) [Model]

Bianchi D et al. (2012). On the mechanisms underlying the depolarization block in the spiking dynamics of CA1 pyramidal neurons. Journal of computational neuroscience. 33 [PubMed]

• CA1 pyramidal neuron: depolarization block (Bianchi et al. 2012) [Model]

Carnevale NT, Hines M. (2003). Personal Communication of NEURON bibliography .

Carnevale NT, Morse TM. (1996). Research reports that have used NEURON Web published citations at the NEURON website.

Clark BA, Monsivais P, Branco T, London M, Häusser M. (2005). The site of action potential initiation in cerebellar Purkinje neurons. Nature neuroscience. 8 [PubMed]

Djurisic M, Antic S, Chen WR, Zecevic D. (2004). Voltage imaging from dendrites of mitral cells: EPSP attenuation and spike trigger zones. The Journal of neuroscience : the official journal of the Society for Neuroscience. 24 [PubMed]

• Voltage imaging calibration in tuft dendrites of mitral cells (Djurisic et al 2004) [Model]

Fleidervish IA, Lasser-Ross N, Gutnick MJ, Ross WN. (2010). Na+ imaging reveals little difference in action potential-evoked Na+ influx between axon and soma. Nature neuroscience. 13 [PubMed]

• Action potential-evoked Na+ influx are similar in axon and soma (Fleidervish et al. 2010) [Model]
• Action potential-evoked Na+ influx similar in axon and soma (Fleidervish et al. 2010) (Python) [Model]

Foust AJ, Yu Y, Popovic M, Zecevic D, McCormick DA. (2011). Somatic membrane potential and Kv1 channels control spike repolarization in cortical axon collaterals and presynaptic boutons. The Journal of neuroscience : the official journal of the Society for Neuroscience. 31 [PubMed]

• Spike repolarization in axon collaterals (Foust et al. 2011) [Model]

Gasparini S, Migliore M, Magee JC. (2004). On the initiation and propagation of dendritic spikes in CA1 pyramidal neurons. The Journal of neuroscience : the official journal of the Society for Neuroscience. 24 [PubMed]

• CA1 pyramidal neuron: dendritic spike initiation (Gasparini et al 2004) [Model]

Gold C, Henze DA, Koch C. (2007). Using extracellular action potential recordings to constrain compartmental models. Journal of computational neuroscience. 23 [PubMed]

• Extracellular Action Potential Simulations (Gold et al 2007) [Model]

Gold C, Henze DA, Koch C, Buzsáki G. (2006). On the origin of the extracellular action potential waveform: A modeling study. Journal of neurophysiology. 95 [PubMed]

• Extracellular Action Potential Simulations (Gold et al 2007) [Model]

Golomb D, Yue C, Yaari Y. (2006). Contribution of persistent Na+ current and M-type K+ current to somatic bursting in CA1 pyramidal cells: combined experimental and modeling study. Journal of neurophysiology. 96 [PubMed]

• CA1 pyramidal cell: I_NaP and I_M contributions to somatic bursting (Golomb et al 2006) [Model]

Hay E, Hill S, Schürmann F, Markram H, Segev I. (2011). Models of neocortical layer 5b pyramidal cells capturing a wide range of dendritic and perisomatic active properties. PLoS computational biology. 7 [PubMed]

• L5b PC model constrained for BAC firing and perisomatic current step firing (Hay et al., 2011) [Model]
• Layer V pyramidal cell model with reduced morphology (Mäki-Marttunen et al 2018) [Model]
• Cortical Layer 5b pyr. cell with [Na+]i mechanisms, from Hay et al 2011 (Zylbertal et al 2017) [Model]

Hay E, Schürmann F, Markram H, Segev I. (2013). Preserving axosomatic spiking features despite diverse dendritic morphology. Journal of neurophysiology. 109 [PubMed]

• Preserving axosomatic spiking features despite diverse dendritic morphology (Hay et al., 2013) [Model]

Hsu CL, Zhao X, Milstein AD, Spruston N. (2018). Persistent sodium current mediates the steep voltage dependence of spatial coding in hippocampal pyramidal neurons Neuron. 99

• CA1 pyramidal neuron: Persistent Na current mediates steep synaptic amplification (Hsu et al 2018) [Model]

Hu W et al. (2009). Distinct contributions of Na(v)1.6 and Na(v)1.2 in action potential initiation and backpropagation. Nature neuroscience. 12 [PubMed]

• Action Potential initiation and backpropagation in Neocortical L5 Pyramidal Neuron (Hu et al. 2009) [Model]

Huss M et al. (2007). Roles of ionic currents in lamprey CpG neurons: a modeling study. Journal of neurophysiology. 97 [PubMed]

• Lamprey spinal CPG neuron (Huss et al. 2007) [Model]

Keren N, Peled N, Korngreen A. (2005). Constraining compartmental models using multiple voltage recordings and genetic algorithms. Journal of neurophysiology. 94 [PubMed]

Kole MH et al. (2008). Action potential generation requires a high sodium channel density in the axon initial segment. Nature neuroscience. 11 [PubMed]

• Na+ channel dependence of AP initiation in cortical pyramidal neuron (Kole et al. 2008) [Model]

Lee DC, Jensen AL, Schiefer MA, Morgan CW, Grill WM. (2005). Structural mechanisms to produce differential dendritic gains. Brain research. 1033 [PubMed]

Liu Z, Ren J, Murphy TH. (2003). Decoding of synaptic voltage waveforms by specific classes of recombinant high-threshold Ca(2+) channels. The Journal of physiology. 553 [PubMed]

McCormick DA, Shu Y, Yu Y. (2007). Neurophysiology: Hodgkin and Huxley model--still standing? Nature. 445 [PubMed]

• AP back-prop. explains threshold variability and rapid rise (McCormick et al. 2007, Yu et al. 2008) [Model]

Meeks JP, Mennerick S. (2007). Action potential initiation and propagation in CA3 pyramidal axons. Journal of neurophysiology. 97 [PubMed]

Mercer JN, Chan CS, Tkatch T, Held J, Surmeier DJ. (2007). Nav1.6 sodium channels are critical to pacemaking and fast spiking in globus pallidus neurons. The Journal of neuroscience : the official journal of the Society for Neuroscience. 27 [PubMed]

• Nav1.6 sodium channel model in globus pallidus neurons (Mercer et al. 2007) [Model]

Michalikova M, Remme MW, Kempter R. (2017). Spikelets in Pyramidal Neurons: Action Potentials Initiated in the Axon Initial Segment That Do Not Activate the Soma. PLoS computational biology. 13 [PubMed]

• Spikelet generation and AP initiation in a L5 neocortical pyr neuron (Michalikova et al. 2017) Fig 1 [Model]
• Spikelet generation and AP initiation in a simplified pyr neuron (Michalikova et al. 2017) Fig 3 [Model]

Platkiewicz J, Brette R. (2010). A threshold equation for action potential initiation. PLoS computational biology. 6 [PubMed]

• A threshold equation for action potential initiation (Platkiewicz & Brette 2010) [Model]

Royeck M et al. (2008). Role of axonal NaV1.6 sodium channels in action potential initiation of CA1 pyramidal neurons. Journal of neurophysiology. 100 [PubMed]

• Axonal NaV1.6 Sodium Channels in AP Initiation of CA1 Pyramidal Neurons (Royeck et al. 2008) [Model]

Saraga F, Wu CP, Zhang L, Skinner FK. (2003). Active dendrites and spike propagation in multi-compartment models of oriens-lacunosum/moleculare hippocampal interneurons. The Journal of physiology. 552 [PubMed]

• Active dendrites and spike propagation in a hippocampal interneuron (Saraga et al 2003) [Model]

Schaefer AT et al. (2007). Dendritic voltage-gated K+ conductance gradient in pyramidal neurones of neocortical layer 5B from rats. The Journal of physiology. 579 [PubMed]

• Correcting space clamp in dendrites (Schaefer et al. 2003 and 2007) [Model]

Schmidt-Hieber C, Bischofberger J. (2010). Fast sodium channel gating supports localized and efficient axonal action potential initiation. The Journal of neuroscience : the official journal of the Society for Neuroscience. 30 [PubMed]

• Fast sodium channel gating in mossy fiber axons (Schmidt-Hieber et al. 2010) [Model]

Shu Y, Duque A, Yu Y, Haider B, McCormick DA. (2007). Properties of action-potential initiation in neocortical pyramidal cells: evidence from whole cell axon recordings. Journal of neurophysiology. 97 [PubMed]

• Intracortical synaptic potential modulation by presynaptic somatic potential (Shu et al. 2006, 2007) [Model]

Singh C, Levy WB. (2017). A consensus layer V pyramidal neuron can sustain interpulse-interval coding. PloS one. 12 [PubMed]

• Stochastic layer V pyramidal neuron: interpulse interval coding and noise (Singh & Levy 2017) [Model]

Spirou GA, Rager J, Manis PB. (2005). Convergence of auditory-nerve fiber projections onto globular bushy cells. Neuroscience. 136 [PubMed]

Williams SR, Stuart GJ. (2003). Voltage- and site-dependent control of the somatic impact of dendritic IPSPs. The Journal of neuroscience : the official journal of the Society for Neuroscience. 23 [PubMed]

Wilmes KA, Sprekeler H, Schreiber S. (2016). Inhibition as a Binary Switch for Excitatory Plasticity in Pyramidal Neurons. PLoS computational biology. 12 [PubMed]

• Inhibition of bAPs and Ca2+ spikes in a multi-compartment pyramidal neuron model (Wilmes et al 2016) [Model]

Yu Y, Shu Y, McCormick DA. (2008). Cortical action potential backpropagation explains spike threshold variability and rapid-onset kinetics. The Journal of neuroscience : the official journal of the Society for Neuroscience. 28 [PubMed]

• AP back-prop. explains threshold variability and rapid rise (McCormick et al. 2007, Yu et al. 2008) [Model]

Zylbertal A, Kahan A, Ben-Shaul Y, Yarom Y, Wagner S. (2015). Prolonged Intracellular Na+ Dynamics Govern Electrical Activity in Accessory Olfactory Bulb Mitral Cells. PLoS biology. 13 [PubMed]

• AOB mitral cell: persistent activity without feedback (Zylbertal et al., 2015) [Model]

Zylbertal A, Yarom Y, Wagner S. (2017). The Slow Dynamics of Intracellular Sodium Concentration Increase the Time Window of Neuronal Integration: A Simulation Study Frontiers in computational neuroscience. 11 [PubMed]

• Cortical Layer 5b pyr. cell with [Na+]i mechanisms, from Hay et al 2011 (Zylbertal et al 2017) [Model]

Öz P, Huang M, Wolf F. (2015). Action potential initiation in a multi-compartmental model with cooperatively gating Na channels in the axon initial segment. Journal of computational neuroscience. 39 [PubMed]

• MCCAIS model (multicompartmental cooperative AIS) (Öz et al 2015) [Model]