Acker CD, Antic SD. (2009). Quantitative assessment of the distributions of membrane conductances involved in action potential backpropagation along basal dendrites. Journal of neurophysiology. 101 [PubMed]

• Excitability of PFC Basal Dendrites (Acker and Antic 2009) [Model]

Acker CD, White JA. (2007). Roles of IA and morphology in action potential propagation in CA1 pyramidal cell dendrites. Journal of computational neuroscience. 23 [PubMed]

• Roles of I(A) and morphology in AP prop. in CA1 pyramidal cell dendrites (Acker and White 2007) [Model]

Baccus SA. (1998). Synaptic facilitation by reflected action potentials: enhancement of transmission when nerve impulses reverse direction at axon branch points. Proceedings of the National Academy of Sciences of the United States of America. 95 [PubMed]

• Leech Mechanosensory Neurons: Synaptic Facilitation by Reflected APs (Baccus 1998) [Model]

Basak R, Narayanan R. (2018). Active dendrites regulate the spatiotemporal spread of signaling microdomains. PLoS computational biology. 14 [PubMed]

• Active dendrites shape signaling microdomains in hippocampal neurons (Basak & Narayanan 2018) [Model]

Bekkers JM, Stevens CF. (1996). Cable properties of cultured hippocampal neurons determined from sucrose-evoked miniature EPSCs. Journal of neurophysiology. 75 [PubMed]

Bianchi D et al. (2012). On the mechanisms underlying the depolarization block in the spiking dynamics of CA1 pyramidal neurons. Journal of computational neuroscience. 33 [PubMed]

• CA1 pyramidal neuron: depolarization block (Bianchi et al. 2012) [Model]

Bloss EB et al. (2016). Structured Dendritic Inhibition Supports Branch-Selective Integration in CA1 Pyramidal Cells. Neuron. 89 [PubMed]

• CA1 pyramidal neuron synaptic integration (Bloss et al. 2016) [Model]

Bloss EB et al. (2018). Single excitatory axons form clustered synapses onto CA1 pyramidal cell dendrites. Nature neuroscience. 21 [PubMed]

• Single excitatory axons form clustered synapses onto CA1 pyramidal cell dendrites (Bloss et al 2018) [Model]

Booth V, Poe GR. (2006). Input source and strength influences overall firing phase of model hippocampal CA1 pyramidal cells during theta: relevance to REM sleep reactivation and memory consolidation. Hippocampus. 16 [PubMed]

Cataldo E et al. (2005). Computational model of touch sensory cells (T Cells) of the leech: role of the afterhyperpolarization (AHP) in activity-dependent conduction failure. Journal of computational neuroscience. 18 [PubMed]

• Touch Sensory Cells (T Cells) of the Leech (Cataldo et al. 2004) (Scuri et al. 2007) [Model]

Colbert CM, Pan E. (2002). Ion channel properties underlying axonal action potential initiation in pyramidal neurons. Nature neuroscience. 5 [PubMed]

Cook EP, Johnston D. (1997). Active dendrites reduce location-dependent variability of synaptic input trains. Journal of neurophysiology. 78 [PubMed]

Diba K, Koch C, Segev I. (2006). Spike propagation in dendrites with stochastic ion channels. Journal of computational neuroscience. 20 [PubMed]

• Spike propagation in dendrites with stochastic ion channels (Diba et al. 2006) [Model]

Diwakar S, Magistretti J, Goldfarb M, Naldi G, D'Angelo E. (2009). Axonal Na+ channels ensure fast spike activation and back-propagation in cerebellar granule cells. Journal of neurophysiology. 101 [PubMed]

• Multicompartmental cerebellar granule cell model (Diwakar et al. 2009) [Model]

Djurisic M, Antic S, Chen WR, Zecevic D. (2004). Voltage imaging from dendrites of mitral cells: EPSP attenuation and spike trigger zones. The Journal of neuroscience : the official journal of the Society for Neuroscience. 24 [PubMed]

• Voltage imaging calibration in tuft dendrites of mitral cells (Djurisic et al 2004) [Model]

Durstewitz D, Seamans JK, Sejnowski TJ. (2000). Dopamine-mediated stabilization of delay-period activity in a network model of prefrontal cortex. Journal of neurophysiology. 83 [PubMed]

• Neocortical pyramidal neuron: deep; effects of dopamine (Durstewitz et al 2000) [Model]

Fernandez FR, Mehaffey WH, Turner RW. (2005). Dendritic Na+ current inactivation can increase cell excitability by delaying a somatic depolarizing afterpotential. Journal of neurophysiology. 94 [PubMed]

• Dendritic Na inactivation drives a decrease in ISI (Fernandez et al 2005) [Model]

Golding NL, Kath WL, Spruston N. (2001). Dichotomy of action-potential backpropagation in CA1 pyramidal neuron dendrites. Journal of neurophysiology. 86 [PubMed]

• Dichotomy of action-potential backpropagation in CA1 pyramidal neuron dendrites (Golding et al 2001) [Model]

Guet-McCreight A, Camiré O, Topolnik L, Skinner FK. (2016). Using a Semi-Automated Strategy to Develop Multi-Compartment Models That Predict Biophysical Properties of Interneuron-Specific 3 (IS3) Cells in Hippocampus. eNeuro. 3 [PubMed]

• Interneuron Specific 3 Interneuron Model (Guet-McCreight et al, 2016) [Model]

Górski T et al. (2018). Dendritic sodium spikes endow neurons with inverse firing rate response to correlated synaptic activity. Journal of computational neuroscience. 45 [PubMed]

• Response to correlated synaptic input for HH/IF point neuron vs with dendrite (Górski et al 2018) [Model]

Hanson JE, Smith Y, Jaeger D. (2004). Sodium channels and dendritic spike initiation at excitatory synapses in globus pallidus neurons. The Journal of neuroscience : the official journal of the Society for Neuroscience. 24 [PubMed]

Henze DA, Cameron WE, Barrionuevo G. (1996). Dendritic morphology and its effects on the amplitude and rise-time of synaptic signals in hippocampal CA3 pyramidal cells. The Journal of comparative neurology. 369 [PubMed]

Hoffman DA, Magee JC, Colbert CM, Johnston D. (1997). K+ channel regulation of signal propagation in dendrites of hippocampal pyramidal neurons. Nature. 387 [PubMed]

Häusser M, Spruston N, Stuart GJ. (2000). Diversity and dynamics of dendritic signaling. Science (New York, N.Y.). 290 [PubMed]

Häusser M, Stuart G, Racca C, Sakmann B. (1995). Axonal initiation and active dendritic propagation of action potentials in substantia nigra neurons. Neuron. 15 [PubMed]

Inoue M, Hashimoto Y, Kudo Y, Miyakawa H. (2001). Dendritic attenuation of synaptic potentials in the CA1 region of rat hippocampal slices detected with an optical method. The European journal of neuroscience. 13 [PubMed]

Jarsky T, Roxin A, Kath WL, Spruston N. (2005). Conditional dendritic spike propagation following distal synaptic activation of hippocampal CA1 pyramidal neurons. Nature neuroscience. 8 [PubMed]

• CA1 pyramidal neuron synaptic integration (Jarsky et al. 2005) [Model]

Keren N, Peled N, Korngreen A. (2005). Constraining compartmental models using multiple voltage recordings and genetic algorithms. Journal of neurophysiology. 94 [PubMed]

Kim Y, Hsu CL, Cembrowski MS, Mensh BD, Spruston N. (2015). Dendritic sodium spikes are required for long-term potentiation at distal synapses on hippocampal pyramidal neurons. eLife. 4 [PubMed]

• CA1 pyramidal neuron: Dendritic Na+ spikes are required for LTP at distal synapses (Kim et al 2015) [Model]

Korngreen A, Kaiser KM, Zilberter Y. (2005). Subthreshold inactivation of voltage-gated K+ channels modulates action potentials in neocortical bitufted interneurones from rats. The Journal of physiology. 562 [PubMed]

• Subthreshold inact. of K channels modulates APs in bitufted interneurons (Korngreen et al 2005) [Model]

Letzkus JJ, Kampa BM, Stuart GJ. (2006). Learning rules for spike timing-dependent plasticity depend on dendritic synapse location. The Journal of neuroscience : the official journal of the Society for Neuroscience. 26 [PubMed]

• STDP depends on dendritic synapse location (Letzkus et al. 2006) [Model]

Lewin N, Aksay E, Clancy CE. (2012). Computational modeling reveals dendritic origins of GABA(A)-mediated excitation in CA1 pyramidal neurons. PloS one. 7 [PubMed]

• Paradoxical GABA-mediated excitation (Lewin et al. 2012) [Model]

Li X, Ascoli GA. (2006). Computational simulation of the input-output relationship in hippocampal pyramidal cells. Journal of computational neuroscience. 21 [PubMed]

• CA1 pyramidal neuron synaptic integration (Li and Ascoli 2006, 2008) [Model]

Lipowsky R, Gillessen T, Alzheimer C. (1996). Dendritic Na+ channels amplify EPSPs in hippocampal CA1 pyramidal cells. Journal of neurophysiology. 76 [PubMed]

Liu Z, Ren J, Murphy TH. (2003). Decoding of synaptic voltage waveforms by specific classes of recombinant high-threshold Ca(2+) channels. The Journal of physiology. 553 [PubMed]

Lowe G. (2002). Inhibition of backpropagating action potentials in mitral cell secondary dendrites. Journal of neurophysiology. 88 [PubMed]

Lüscher HR, Larkum ME. (1998). Modeling action potential initiation and back-propagation in dendrites of cultured rat motoneurons. Journal of neurophysiology. 80 [PubMed]

Menon V, Spruston N, Kath WL. (2009). A state-mutating genetic algorithm to design ion-channel models. Proceedings of the National Academy of Sciences of the United States of America. 106 [PubMed]

• Hippocampus CA1 pyramidal model with Na channel exhibiting slow inactivation (Menon et al. 2009) [Model]

Miceli F et al. (2015). Early-onset epileptic encephalopathy caused by gain-of-function mutations in the voltage sensor of Kv7.2 and Kv7.3 potassium channel subunits. The Journal of neuroscience : the official journal of the Society for Neuroscience. 35 [PubMed]

• Early-onset epileptic encephalopathy (Miceli et al. 2015) [Model]

Michalikova M, Remme MW, Kempter R. (2017). Spikelets in Pyramidal Neurons: Action Potentials Initiated in the Axon Initial Segment That Do Not Activate the Soma. PLoS computational biology. 13 [PubMed]

• Spikelet generation and AP initiation in a L5 neocortical pyr neuron (Michalikova et al. 2017) Fig 1 [Model]
• Spikelet generation and AP initiation in a simplified pyr neuron (Michalikova et al. 2017) Fig 3 [Model]

Migliore M, Culotta M. (1998). Energy efficient modulation of dendritic processing functions. Bio Systems. 48 [PubMed]

Migliore M, Hoffman DA, Magee JC, Johnston D. (1999). Role of an A-type K+ conductance in the back-propagation of action potentials in the dendrites of hippocampal pyramidal neurons. Journal of computational neuroscience. 7 [PubMed]

• CA1 pyramidal neuron (Migliore et al 1999) [Model]

Migliore M, Messineo L, Ferrante M. (2004). Dendritic Ih selectively blocks temporal summation of unsynchronized distal inputs in CA1 pyramidal neurons. Journal of computational neuroscience. 16 [PubMed]

• CA1 pyramidal neuron: effects of Ih on distal inputs (Migliore et al 2004) [Model]

Morse TM, Carnevale NT, Mutalik PG, Migliore M, Shepherd GM. (2010). Abnormal Excitability of Oblique Dendrites Implicated in Early Alzheimer's: A Computational Study. Frontiers in neural circuits. 4 [PubMed]

• Amyloid beta (IA block) effects on a model CA1 pyramidal cell (Morse et al. 2010) [Model]

Muller SZ, Abbott LF, Sawtell NB. (2023). A Mechanism for Differential Control of Axonal and Dendritic Spiking Underlying Learning in a Cerebellum-like Circuit Curr Biol. [PubMed]

• ELL Medium Ganglion Cell (Mormyrid fish) (Muller et al, 2023) [Model]

Neville KR, Lytton WW. (1999). Potentiation of Ca2+ influx through NMDA channels by action potentials: a computer model. Neuroreport. 10 [PubMed]

Neymotin SA, Dura-Bernal S, Lakatos P, Sanger TD, Lytton WW. (2016). Multitarget Multiscale Simulation for Pharmacological Treatment of Dystonia in Motor Cortex. Frontiers in pharmacology. 7 [PubMed]

• Multitarget pharmacology for Dystonia in M1 (Neymotin et al 2016) [Model]

Neymotin SA et al. (2016). Calcium regulation of HCN channels supports persistent activity in a multiscale model of neocortex. Neuroscience. 316 [PubMed]

• Ca+/HCN channel-dependent persistent activity in multiscale model of neocortex (Neymotin et al 2016) [Model]

Padmashri R, Ganguly A, Mondal PP, Rajan K, Sikdar SK. (2006). Kynurenate treatment of autaptic hippocampal microcultures affect localized voltage-dependent calcium diffusion in the dendrites. Cell calcium. 39 [PubMed]

Paré D, Lang EJ, Destexhe A. (1998). Inhibitory control of somatodendritic interactions underlying action potentials in neocortical pyramidal neurons in vivo: an intracellular and computational study. Neuroscience. 84 [PubMed]

Poirazi P, Brannon T, Mel BW. (2003). Online Supplement: About the Model Neuron. 37 Online

• CA1 pyramidal neuron: as a 2-layer NN and subthreshold synaptic summation (Poirazi et al 2003) [Model]

Poirazi P, Markaki M, Orphanoudakis S. (2005). Modelling reduced excitability in aged CA1 neurons as a calcium-dependent process Neurocomputing. 65-66

• Modelling reduced excitability in aged CA1 neurons as a Ca-dependent process (Markaki et al. 2005) [Model]

Rapp M, Yarom Y, Segev I. (1996). Modeling back propagating action potential in weakly excitable dendrites of neocortical pyramidal cells. Proceedings of the National Academy of Sciences of the United States of America. 93 [PubMed]

Roberts CB, Best JA, Suter KJ. (2006). Dendritic processing of excitatory synaptic input in hypothalamic gonadotropin releasing-hormone neurons. Endocrinology. 147 [PubMed]

• Dendritic processing of excitatory synaptic input in GnRH neurons (Roberts et al. 2006) [Model]

Ross MD, Linton SW, Parnas BR. (2000). Simulation studies of vestibular macular afferent-discharge patterns using a new, quasi-3-D finite volume method. Journal of computational neuroscience. 8 [PubMed]

Sah P, Bekkers JM. (1996). Apical dendritic location of slow afterhyperpolarization current in hippocampal pyramidal neurons: implications for the integration of long-term potentiation. The Journal of neuroscience : the official journal of the Society for Neuroscience. 16 [PubMed]

Shao LR, Halvorsrud R, Borg-Graham L, Storm JF. (1999). The role of BK-type Ca2+-dependent K+ channels in spike broadening during repetitive firing in rat hippocampal pyramidal cells. The Journal of physiology. 521 Pt 1 [PubMed]

Sterratt DC, Groen MR, Meredith RM, van Ooyen A. (2012). Spine calcium transients induced by synaptically-evoked action potentials can predict synapse location and establish synaptic democracy. PLoS computational biology. 8 [PubMed]

• CA1 pyramidal neuron: synaptically-induced bAP predicts synapse location (Sterratt et al. 2012) [Model]

. (2004). Does a dendritic democracy need a ruler? Neurocomputing. 58

Stuart G, Spruston N, Sakmann B, Häusser M. (1997). Action potential initiation and backpropagation in neurons of the mammalian CNS. Trends in neurosciences. 20 [PubMed]

Teramae JN, Fukai T. (2005). A Cellular Mechanism for Graded Persistent Activity in a Model Neuron and Its Implications in Working Memory Journal of computational neuroscience. 18 [PubMed]

Tsay D, Yuste R. (2002). Role of dendritic spines in action potential backpropagation: a numerical simulation study. Journal of neurophysiology. 88 [PubMed]

Urakubo H, Aihara T, Kuroda S, Watanabe M, Kondo S. (2004). Spatial localization of synapses required for supralinear summation of action potentials and EPSPs. Journal of computational neuroscience. 16 [PubMed]

Vetter P, Roth A, Häusser M. (2001). Propagation of action potentials in dendrites depends on dendritic morphology. Journal of neurophysiology. 85 [PubMed]

• Dendritica (Vetter et al 2001) [Model]

Williams SR, Stuart GJ. (2000). Action potential backpropagation and somato-dendritic distribution of ion channels in thalamocortical neurons. The Journal of neuroscience : the official journal of the Society for Neuroscience. 20 [PubMed]

• Thalamic Relay Neuron: I-T current (Williams, Stuart 2000) [Model]

Williams SR, Stuart GJ. (2003). Role of dendritic synapse location in the control of action potential output. Trends in neurosciences. 26 [PubMed]

Wilmes KA, Sprekeler H, Schreiber S. (2016). Inhibition as a Binary Switch for Excitatory Plasticity in Pyramidal Neurons. PLoS computational biology. 12 [PubMed]

• Inhibition of bAPs and Ca2+ spikes in a multi-compartment pyramidal neuron model (Wilmes et al 2016) [Model]

Yang CR, Seamans JK, Gorelova N. (1999). Developing a neuronal model for the pathophysiology of schizophrenia based on the nature of electrophysiological actions of dopamine in the prefrontal cortex. Neuropsychopharmacology : official publication of the American College of Neuropsychopharmacology. 21 [PubMed]

Zhu JJ, Uhlrich DJ, Lytton WW. (1999). Burst firing in identified rat geniculate interneurons. Neuroscience. 91 [PubMed]

• Thalamic interneuron multicompartment model (Zhu et al. 1999) [Model]

van Elburg RA, van Ooyen A. (2010). Impact of dendritic size and dendritic topology on burst firing in pyramidal cells. PLoS computational biology. 6 [PubMed]

• Impact of dendritic size and topology on pyramidal cell burst firing (van Elburg and van Ooyen 2010) [Model]