Arkhipov A et al. (2018). Visual physiology of the layer 4 cortical circuit in silico. PLoS computational biology. 14 [PubMed]

• Visual physiology of the layer 4 cortical circuit in silico (Arkhipov et al 2018) [Model]

Brennan EKW, Sudhakar SK, Jedrasiak-Cape I, John TT, Ahmed OJ. (2020). Hyperexcitable Neurons Enable Precise and Persistent Information Encoding in the Superficial Retrosplenial Cortex. Cell reports. 30 [PubMed]

• Two populations of excitatory neurons in the superficial retrosplenial cortex (Brennan et al 2020) [Model]

Ermentrout GB, Terman DH. (2010). Mathematical Foundations of Neuroscience Interdisciplinary Applied Mathematics. 35

• Mathematical Foundations of Neuroscience (Ermentrout and Terman 2010) [Model]

Golomb D et al. (2007). Mechanisms of firing patterns in fast-spiking cortical interneurons. PLoS computational biology. 3 [PubMed]

• Fast-spiking cortical interneuron (Golomb et al. 2007) [Model]

Golomb D, Shedmi A, Curtu R, Ermentrout GB. (2006). Persistent synchronized bursting activity in cortical tissues with low magnesium concentration: a modeling study. Journal of neurophysiology. 95 [PubMed]

• Persistent synchronized bursting activity in cortical tissues (Golomb et al 2005) [Model]

Golomb D et al. (2017). Mechanisms underlying a thalamocortical transformation during active tactile sensation PLoS Comput Biol. 13(6)

• L4 cortical barrel NN model receiving thalamic input during whisking or touch (Gutnisky et al. 2017) [Model]

Hagen E et al. (2017). Focal Local Field Potential Signature of the Single-Axon Monosynaptic Thalamocortical Connection. The Journal of neuroscience : the official journal of the Society for Neuroscience. 37 [PubMed]

• LFP signature of monosynaptic thalamocortical connection (Hagen et al 2017) [Model]

Hayut I, Fanselow EE, Connors BW, Golomb D. (2011). LTS and FS inhibitory interneurons, short-term synaptic plasticity, and cortical circuit dynamics. PLoS computational biology. 7 [PubMed]

• Rate model of a cortical RS-FS-LTS network (Hayut et al. 2011) [Model]

Helmstaedter M, Sakmann B, Feldmeyer D. (2009). The relation between dendritic geometry, electrical excitability, and axonal projections of L2/3 interneurons in rat barrel cortex. Cerebral cortex (New York, N.Y. : 1991). 19 [PubMed]

• Axonal Projection and Interneuron Types (Helmstaedter et al. 2008) [Model]

Helmstaedter M, Staiger JF, Sakmann B, Feldmeyer D. (2008). Efficient recruitment of layer 2/3 interneurons by layer 4 input in single columns of rat somatosensory cortex. The Journal of neuroscience : the official journal of the Society for Neuroscience. 28 [PubMed]

• Axonal Projection and Interneuron Types (Helmstaedter et al. 2008) [Model]

Higley MJ, Contreras D. (2006). Balanced excitation and inhibition determine spike timing during frequency adaptation. The Journal of neuroscience : the official journal of the Society for Neuroscience. 26 [PubMed]

Huang C, Zeldenrust F, Celikel T. (2022). Cortical Representation of Touch in Silico Neuroinformatics. 20 [PubMed]

• Realistic barrel cortical column - Matlab (Huang et al., 2022) [Model]
• Realistic barrel cortical column - NetPyNE (Huang et al., 2022) [Model]

Komarov M, Bazhenov M. (2016). Linking dynamics of the inhibitory network to the input structure. Journal of computational neuroscience. 41 [PubMed]

• Linking dynamics of the inhibitory network to the input structure (Komarov & Bazhenov 2016) [Model]

Maex R, De Schutter E. (2003). Resonant synchronization in heterogeneous networks of inhibitory neurons. The Journal of neuroscience : the official journal of the Society for Neuroscience. 23 [PubMed]

• Fast oscillations in inhibitory networks (Maex, De Schutter 2003) [Model]

Markram H et al. (2015). Reconstruction and Simulation of Neocortical Microcircuitry. Cell. 163 [PubMed]

• The neocortical microcircuit collaboration portal (Markram et al. 2015) [Model]

Morita K. (2008). Possible role of dendritic compartmentalization in the spatial working memory circuit. The Journal of neuroscience : the official journal of the Society for Neuroscience. 28 [PubMed]

• Working memory circuit with branched dendrites (Morita 2008) [Model]

Morita K, Okada M, Aihara K. (2007). Selectivity and stability via dendritic nonlinearity. Neural computation. 19 [PubMed]

Potjans TC, Diesmann M. (2014). The cell-type specific cortical microcircuit: relating structure and activity in a full-scale spiking network model. Cerebral cortex (New York, N.Y. : 1991). 24 [PubMed]

• A full-scale cortical microcircuit spiking network model (Shimoura et al 2018) [Model]

Sudhakar SK, Choi TJ, Ahmed OJ. (2019). Biophysical Modeling Suggests Optimal Drug Combinations for Improving the Efficacy of GABA Agonists after Traumatic Brain Injuries. Journal of neurotrauma. 36 [PubMed]

• Biophysical modeling of pathological brain states (Sudhakar et al 2019) [Model]

Teka W, Marinov TM, Santamaria F. (2014). Neuronal spike timing adaptation described with a fractional leaky integrate-and-fire model. PLoS computational biology. 10 [PubMed]

• Fractional leaky integrate-and-fire model (Teka et al. 2014) [Model]

Tiesinga PH. (2005). Stimulus competition by inhibitory interference. Neural computation. 17 [PubMed]

Traub RD et al. (2005). Single-column thalamocortical network model exhibiting gamma oscillations, sleep spindles, and epileptogenic bursts. Journal of neurophysiology. 93 [PubMed]

• A single column thalamocortical network model (Traub et al 2005) [Model]
• Collection of simulated data from a thalamocortical network model (Glabska, Chintaluri, Wojcik 2017) [Model]

Traub RD et al. (2005). Transient depression of excitatory synapses on interneurons contributes to epileptiform bursts during gamma oscillations in the mouse hippocampal slice. Journal of neurophysiology. 94 [PubMed]

Vierling-Claassen D, Cardin JA, Moore CI, Jones SR. (2010). Computational modeling of distinct neocortical oscillations driven by cell-type selective optogenetic drive: separable resonant circuits controlled by low-threshold spiking and fast-spiking interneurons. Frontiers in human neuroscience. 4 [PubMed]

• Engaging distinct oscillatory neocortical circuits (Vierling-Claassen et al. 2010) [Model]