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Badoual M et al. (2006). Biophysical and phenomenological models of multiple spike interactions in spike-timing dependent plasticity. International journal of neural systems. 16 [PubMed]

• Biophysical and phenomenological models of spike-timing dependent plasticity (Badoual et al. 2006) [Model]

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• Dendritic spine geometry, spine apparatus organization: spatiotemporal Ca dynamics (Bell et al 2019) [Model]

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Franks KM, Sejnowski TJ. (2002). Complexity of calcium signaling in synaptic spines. BioEssays : news and reviews in molecular, cellular and developmental biology. 24 [PubMed]

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• Spine head calcium in a CA1 pyramidal cell model (Graham et al. 2014) [Model]

Graupner M, Brunel N. (2007). STDP in a bistable synapse model based on CaMKII and associated signaling pathways. PLoS computational biology. 3 [PubMed]

• CaMKII system exhibiting bistability with respect to calcium (Graupner and Brunel 2007) [Model]

Graupner M, Brunel N. (2012). Calcium-based plasticity model explains sensitivity of synaptic changes to spike pattern, rate, and dendritic location. Proceedings of the National Academy of Sciences of the United States of America. 109 [PubMed]

Gulledge AT, Carnevale NT, Stuart GJ. (2012). Electrical advantages of dendritic spines. PloS one. 7 [PubMed]

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• Spatial coupling tunes NMDA receptor responses via Ca2+ diffusion (Iacobucci and Popescu 2019) [Model]

Kampa BM, Stuart GJ. (2006). Calcium spikes in basal dendrites of layer 5 pyramidal neurons during action potential bursts. The Journal of neuroscience : the official journal of the Society for Neuroscience. 26 [PubMed]

• Calcium spikes in basal dendrites (Kampa and Stuart 2006) [Model]

Kim B, Hawes SL, Gillani F, Wallace LJ, Blackwell KT. (2013). Signaling pathways involved in striatal synaptic plasticity are sensitive to temporal pattern and exhibit spatial specificity. PLoS computational biology. 9 [PubMed]

• Gq coupled signaling pathways involved in striatal synaptic plasticity (Kim et al. 2013) [Model]

Kim M, Huang T, Abel T, Blackwell KT. (2010). Temporal sensitivity of protein kinase a activation in late-phase long term potentiation. PLoS computational biology. 6 [PubMed]

• Hippocampus CA1: Temporal sensitivity of signaling pathways underlying LTP (Kim et al. 2010) [Model]

Kim M et al. (2011). Colocalization of protein kinase A with adenylyl cyclase enhances protein kinase A activity during induction of long-lasting long-term-potentiation. PLoS computational biology. 7 [PubMed]

• Hippocampus CA1: Simulations of LTP signaling pathways (Kim M et al. 2011) [Model]

Kim Y, Hsu CL, Cembrowski MS, Mensh BD, Spruston N. (2015). Dendritic sodium spikes are required for long-term potentiation at distal synapses on hippocampal pyramidal neurons. eLife. 4 [PubMed]

• CA1 pyramidal neuron: Dendritic Na+ spikes are required for LTP at distal synapses (Kim et al 2015) [Model]

Manita S, Ross WN. (2009). Synaptic activation and membrane potential changes modulate the frequency of spontaneous elementary Ca2+ release events in the dendrites of pyramidal neurons. The Journal of neuroscience : the official journal of the Society for Neuroscience. 29 [PubMed]

Mo CH, Gu M, Koch C. (2004). A learning rule for local synaptic interactions between excitation and shunting inhibition. Neural computation. 16 [PubMed]

O'Donnell C, Nolan MF, van Rossum MC. (2011). Dendritic spine dynamics regulate the long-term stability of synaptic plasticity. The Journal of neuroscience : the official journal of the Society for Neuroscience. 31 [PubMed]

• CA1 pyramidal neuron dendritic spine with plasticity (O`Donnell et al. 2011) [Model]

Palmer LM, Stuart GJ. (2009). Membrane potential changes in dendritic spines during action potentials and synaptic input. The Journal of neuroscience : the official journal of the Society for Neuroscience. 29 [PubMed]

• Membrane potential changes in dendritic spines during APs and synaptic input (Palmer & Stuart 2009) [Model]

Scott R, Rusakov DA. (2006). Main determinants of presynaptic Ca2+ dynamics at individual mossy fiber-CA3 pyramidal cell synapses. The Journal of neuroscience : the official journal of the Society for Neuroscience. 26 [PubMed]

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• STDP and BDNF in CA1 spines (Solinas et al. 2019) [Model]

Sterratt DC, Groen MR, Meredith RM, van Ooyen A. (2012). Spine calcium transients induced by synaptically-evoked action potentials can predict synapse location and establish synaptic democracy. PLoS computational biology. 8 [PubMed]

• CA1 pyramidal neuron: synaptically-induced bAP predicts synapse location (Sterratt et al. 2012) [Model]

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• Mechanisms of fast rhythmic bursting in a layer 2/3 cortical neuron (Traub et al 2003) [Model]

Yu X, Shouval HZ, Knierim JJ. (2008). A biophysical model of synaptic plasticity and metaplasticity can account for the dynamics of the backward shift of hippocampal place fields. Journal of neurophysiology. 100 [PubMed]