Bichler EK, Cavarretta F, Jaeger D. (2021). Changes in Excitability Properties of Ventromedial Motor Thalamic Neurons in 6-OHDA Lesioned Mice. eNeuro. 8 [PubMed]

• Ventromedial Thalamocortical Neuron (Bichler et al 2021) [Model]

Chen M et al. (2015). Critical Roles of the Direct GABAergic Pallido-cortical Pathway in Controlling Absence Seizures. PLoS computational biology. 11 [PubMed]

• Basal ganglia-corticothalamic (BGCT) network (Chen et al., 2014) [Model]

Contreras-Vidal JL, Stelmach GE. (1995). A neural model of basal ganglia-thalamocortical relations in normal and parkinsonian movement. Biological cybernetics. 73 [PubMed]

Cutsuridis V. (2006). Neural Model of Dopaminergic Control of Arm Movements in Parkinson's Disease Bradykinesia. Artificial Neural Networks - ICANN 2006, Lecture Notes in Computer Science, Part 1, LNCS 4131.

• A neural model of Parkinson`s disease (Cutsuridis and Perantonis 2006, Cutsuridis 2006, 2007) [Model]

Cutsuridis V, Perantonis S. (2006). A neural network model of Parkinson's disease bradykinesia. Neural networks : the official journal of the International Neural Network Society. 19 [PubMed]

• A neural model of Parkinson`s disease (Cutsuridis and Perantonis 2006, Cutsuridis 2006, 2007) [Model]

Damodaran S, Cressman JR, Jedrzejewski-Szmek Z, Blackwell KT. (2015). Desynchronization of fast-spiking interneurons reduces ß-band oscillations and imbalance in firing in the dopamine-depleted striatum. The Journal of neuroscience : the official journal of the Society for Neuroscience. 35 [PubMed]

• Striatal NN model of MSNs and FSIs investigated effects of dopamine depletion (Damodaran et al 2015) [Model]

Damodaran S, Evans RC, Blackwell KT. (2014). Synchronized firing of fast-spiking interneurons is critical to maintain balanced firing between direct and indirect pathway neurons of the striatum. Journal of neurophysiology. 111 [PubMed]

• Synchronicity of fast-spiking interneurons balances medium-spiny neurons (Damodaran et al. 2014) [Model]

Frank MJ. (2005). Dynamic dopamine modulation in the basal ganglia: a neurocomputational account of cognitive deficits in medicated and nonmedicated Parkinsonism. Journal of cognitive neuroscience. 17 [PubMed]

• Dynamic dopamine modulation in the basal ganglia: Learning in Parkinson (Frank et al 2004,2005) [Model]

Frank MJ. (2006). Hold your horses: a dynamic computational role for the subthalamic nucleus in decision making. Neural networks : the official journal of the International Neural Network Society. 19 [PubMed]

• Roles of subthalamic nucleus and DBS in reinforcement conflict-based decision making (Frank 2006) [Model]

Frank MJ, Scheres A, Sherman SJ. (2007). Understanding decision-making deficits in neurological conditions: insights from models of natural action selection. Philosophical transactions of the Royal Society of London. Series B, Biological sciences. 362 [PubMed]

Gillies A, Willshaw D. (2006). Membrane channel interactions underlying rat subthalamic projection neuron rhythmic and bursting activity. Journal of neurophysiology. 95 [PubMed]

• Rat subthalamic projection neuron (Gillies and Willshaw 2006) [Model]

Goldberg JH, Farries MA, Fee MS. (2012). Integration of cortical and pallidal inputs in the basal ganglia-recipient thalamus of singing birds. Journal of neurophysiology. 108 [PubMed]

• Thalamic neuron, zebra finch DLM: Integration of pallidal and cortical inputs (Goldberg et al. 2012) [Model]

Gurney K, Prescott TJ, Redgrave P. (2001). A computational model of action selection in the basal ganglia. I. A new functional anatomy. Biological cybernetics. 84 [PubMed]

• Population-level model of the basal ganglia and action selection (Gurney et al 2001, 2004) [Model]

Guthrie M, Leblois A, Garenne A, Boraud T. (2013). Interaction between cognitive and motor cortico-basal ganglia loops during decision making: a computational study. Journal of neurophysiology. 109 [PubMed]

• Cognitive and motor cortico-basal ganglia interactions during decision making (Guthrie et al 2013) [Model]

Günay C, Edgerton JR, Jaeger D. (2008). Channel density distributions explain spiking variability in the globus pallidus: a combined physiology and computer simulation database approach. The Journal of neuroscience : the official journal of the Society for Neuroscience. 28 [PubMed]

• Globus pallidus multi-compartmental model neuron with realistic morphology (Gunay et al. 2008) [Model]

Humphries MD, Lepora N, Wood R, Gurney K. (2009). Capturing dopaminergic modulation and bimodal membrane behaviour of striatal medium spiny neurons in accurate, reduced models. Frontiers in computational neuroscience. 3 [PubMed]

• Dopamine-modulated medium spiny neuron, reduced model (Humphries et al. 2009) [Model]

Humphries MD, Stewart RD, Gurney KN. (2006). A physiologically plausible model of action selection and oscillatory activity in the basal ganglia. The Journal of neuroscience : the official journal of the Society for Neuroscience. 26 [PubMed]

• Spiking neuron model of the basal ganglia (Humphries et al 2006) [Model]

Kumaravelu K, Brocker DT, Grill WM. (2016). A biophysical model of the cortex-basal ganglia-thalamus network in the 6-OHDA lesioned rat model of Parkinson's disease. Journal of computational neuroscience. 40 [PubMed]

• Cortex-Basal Ganglia-Thalamus network model (Kumaravelu et al. 2016) [Model]

Kötter R, Wickens J. (1998). Striatal mechanisms in Parkinson's disease: new insights from computer modeling. Artificial intelligence in medicine. 13 [PubMed]

Leblois A, Boraud T, Meissner W, Bergman H, Hansel D. (2006). Competition between feedback loops underlies normal and pathological dynamics in the basal ganglia. The Journal of neuroscience : the official journal of the Society for Neuroscience. 26 [PubMed]

• A dynamical model of the basal ganglia (Leblois et al 2006) [Model]

Lindroos R et al. (2018). Basal Ganglia Neuromodulation Over Multiple Temporal and Structural Scales-Simulations of Direct Pathway MSNs Investigate the Fast Onset of Dopaminergic Effects and Predict the Role of Kv4.2. Frontiers in neural circuits. 12 [PubMed]

• Striatal D1R medium spiny neuron, including a subcellular DA cascade (Lindroos et al 2018) [Model]

Liénard J, Girard B. (2014). A biologically constrained model of the whole basal ganglia addressing the paradoxes of connections and selection. Journal of computational neuroscience. 36 [PubMed]

• Biologically Constrained Basal Ganglia model (BCBG model) (Lienard, Girard 2014) [Model]

Mercer JN, Chan CS, Tkatch T, Held J, Surmeier DJ. (2007). Nav1.6 sodium channels are critical to pacemaking and fast spiking in globus pallidus neurons. The Journal of neuroscience : the official journal of the Society for Neuroscience. 27 [PubMed]

• Nav1.6 sodium channel model in globus pallidus neurons (Mercer et al. 2007) [Model]

Prescott TJ, Montes González FM, Gurney K, Humphries MD, Redgrave P. (2006). A robot model of the basal ganglia: behavior and intrinsic processing. Neural networks : the official journal of the International Neural Network Society. 19 [PubMed]

• A contracting model of the basal ganglia (Girard et al. 2008) [Model]

Rubchinsky LL, Kopell N, Sigvardt KA. (2003). Modeling facilitation and inhibition of competing motor programs in basal ganglia subthalamic nucleus-pallidal circuits. Proceedings of the National Academy of Sciences of the United States of America. 100 [PubMed]

Rubin JE, Terman D. (2004). High frequency stimulation of the subthalamic nucleus eliminates pathological thalamic rhythmicity in a computational model. Journal of computational neuroscience. 16 [PubMed]

• Optimal deep brain stimulation of the subthalamic nucleus-a computational study (Feng et al. 2007) [Model]
• High frequency stimulation of the Subthalamic Nucleus (Rubin and Terman 2004) [Model]

Salimi-Badr A, Ebadzadeh MM, Darlot C. (2017). A possible correlation between the basal ganglia motor function and the inverse kinematics calculation. Journal of computational neuroscience. 43 [PubMed]

• Basal ganglia motor function and the inverse kinematics calculation (Salimi-Badr et al 2017) [Model]

Salimi-Badr A, Ebadzadeh MM, Darlot C. (2018). A system-level mathematical model of Basal Ganglia motor-circuit for kinematic planning of arm movements. Computers in biology and medicine. 92 [PubMed]

• Basal Ganglia motor-circuit for kinematic planning of arm movements (Salimi-Badr et al 2017) [Model]

Sterratt DC, Graham B, Gillies A, Willshaw D. (2011). Principles of Computational Modelling in Neuroscience, Cambridge University Press.

• Principles of Computational Modelling in Neuroscience (Book) (Sterratt et al. 2011) [Model]

Terman D, Rubin JE, Yew AC, Wilson CJ. (2002). Activity patterns in a model for the subthalamopallidal network of the basal ganglia. The Journal of neuroscience : the official journal of the Society for Neuroscience. 22 [PubMed]

• Optimal deep brain stimulation of the subthalamic nucleus-a computational study (Feng et al. 2007) [Model]
• Activity patterns in a subthalamopallidal network of the basal ganglia model (Terman et al 2002) [Model]

Ursino M, Baston C. (2018). Aberrant learning in Parkinson's disease: A neurocomputational study on bradykinesia. The European journal of neuroscience. 47 [PubMed]

• A basal ganglia model of aberrant learning (Ursino et al. 2018) [Model]

Wickens JR, Kotter R, Alexander ME. (1995). Effects of local connectivity on striatal function: stimulation and analysis of a model. Synapse (New York, N.Y.). 20 [PubMed]