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• Distinct current modules shape cellular dynamics in model neurons (Alturki et al 2016) [Model]

Anderson WD, Makadia HK, Vadigepalli R. (2016). Molecular variability elicits a tunable switch with discrete neuromodulatory response phenotypes. Journal of computational neuroscience. 40 [PubMed]

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Aumentado-Armstrong T, Metzen MG, Sproule MK, Chacron MJ. (2015). Electrosensory Midbrain Neurons Display Feature Invariant Responses to Natural Communication Stimuli. PLoS computational biology. 11 [PubMed]

• Midbrain torus semicircularis neuron model (Aumentado-Armstrong et al. 2015) [Model]

Ausborn J, Stein W, Wolf H. (2007). Frequency control of motor patterning by negative sensory feedback. The Journal of neuroscience : the official journal of the Society for Neuroscience. 27 [PubMed]

• Interaction of leak and IMI conductance on the STG over broad temperature range (Stadele et al 2015) [Model]

Bahl A, Stemmler MB, Herz AV, Roth A. (2012). Automated optimization of a reduced layer 5 pyramidal cell model based on experimental data. Journal of neuroscience methods. 210 [PubMed]

• A set of reduced models of layer 5 pyramidal neurons (Bahl et al. 2012) [Model]

Caplan JS, Williams AH, Marder E. (2014). Many parameter sets in a multicompartment model oscillator are robust to temperature perturbations. The Journal of neuroscience : the official journal of the Society for Neuroscience. 34 [PubMed]

• Temperature-Dependent Pyloric Pacemaker Kernel (Caplan JS et al., 2014) [Model]

Carlu M et al. (2020). A mean-field approach to the dynamics of networks of complex neurons, from nonlinear Integrate-and-Fire to Hodgkin-Huxley models. Journal of neurophysiology. 123 [PubMed]

• Mean field model for Hodgkin Huxley networks of neurons (Carlu et al 2020) [Model]

Ceballos CC, Li S, Roque AC, Tzounopoulos T, Leão RM. (2016). Ih Equalizes Membrane Input Resistance in a Heterogeneous Population of Fusiform Neurons in the Dorsal Cochlear Nucleus. Frontiers in cellular neuroscience. 10 [PubMed]

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Daur N, Diehl F, Mader W, Stein W. (2012). The stomatogastric nervous system as a model for studying sensorimotor interactions in real-time closed-loop conditions. Frontiers in computational neuroscience. 6 [PubMed]

• Interaction of leak and IMI conductance on the STG over broad temperature range (Stadele et al 2015) [Model]

Günay C, Doloc-Mihu A, Lamb DG, Calabrese RL. (2019). Synaptic Strengths Dominate Phasing of Motor Circuit: Intrinsic Conductances of Neuron Types Need Not Vary across Animals. eNeuro. 6 [PubMed]

• Synaptic strengths are critical in creating the proper output phasing in a CPG (Gunay et al 2019) [Model]

Günay C, Prinz AA. (2010). Model calcium sensors for network homeostasis: sensor and readout parameter analysis from a database of model neuronal networks. The Journal of neuroscience : the official journal of the Society for Neuroscience. 30 [PubMed]

• Lobster STG pyloric network model with calcium sensor (Gunay & Prinz 2010) (Prinz et al. 2004) [Model]

Günay C et al. (2015). Distal spike initiation zone location estimation by morphological simulation of ionic current filtering demonstrated in a novel model of an identified Drosophila motoneuron. PLoS computational biology. 11 [PubMed]

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Hendrickson EB, Edgerton JR, Jaeger D. (2011). The use of automated parameter searches to improve ion channel kinetics for neural modeling. Journal of computational neuroscience. 31 [PubMed]

Howard AL, Neu A, Morgan RJ, Echegoyen JC, Soltesz I. (2007). Opposing modifications in intrinsic currents and synaptic inputs in post-traumatic mossy cells: evidence for single-cell homeostasis in a hyperexcitable network. Journal of neurophysiology. 97 [PubMed]

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Jaeger D et al. (2017). Robust Transmission of Rate Coding in the Inhibitory Purkinje Cell to Cerebellar Nuclei Pathway in Awake Mice PLOS Computational Biology.

• Robust transmission in the inhibitory Purkinje Cell to Cerebellar Nuclei pathway (Abbasi et al 2017) [Model]

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• Optimal balance predicts/explains amplitude and decay time of iPSGs (Kim & Fiorillo 2017) [Model]

Lamb DG, Calabrese RL. (2013). Correlated conductance parameters in leech heart motor neurons contribute to motor pattern formation. PloS one. 8 [PubMed]

• Leech Heart (HE) Motor Neuron conductances contributions to NN activity (Lamb & Calabrese 2013) [Model]

Lepora NF, Overton PG, Gurney K. (2012). Efficient fitting of conductance-based model neurons from somatic current clamp. Journal of computational neuroscience. 32 [PubMed]

• Parameter estimation for Hodgkin-Huxley based models of cortical neurons (Lepora et al. 2011) [Model]

Manis PB, Campagnola L. (2018). A biophysical modelling platform of the cochlear nucleus and other auditory circuits: From channels to networks. Hearing research. 360 [PubMed]

• Modelling platform of the cochlear nucleus and other auditory circuits (Manis & Compagnola 2018) [Model]

Nowotny T, Levi R, Selverston AI. (2008). Probing the dynamics of identified neurons with a data-driven modeling approach. PloS one. 3 [PubMed]

• Data-driven, HH-type model of the lateral pyloric (LP) cell in the STG (Nowotny et al. 2008) [Model]

Nowotny T, Szücs A, Levi R, Selverston AI. (2007). Models wagging the dog: are circuits constructed with disparate parameters? Neural computation. 19 [PubMed]

Olypher AV, Calabrese RL. (2007). Using constraints on neuronal activity to reveal compensatory changes in neuronal parameters. Journal of neurophysiology. 98 [PubMed]

• Activity constraints on stable neuronal or network parameters (Olypher and Calabrese 2007) [Model]

Otopalik AG et al. (2017). Sloppy morphological tuning in identified neurons of the crustacean stomatogastric ganglion. eLife. 6 [PubMed]

• Sloppy morphological tuning in identified neurons of the crustacean STG (Otopalik et al 2017) [Model]

Rho YA, Prescott SA. (2012). Identification of molecular pathologies sufficient to cause neuropathic excitability in primary somatosensory afferents using dynamical systems theory. PLoS computational biology. 8 [PubMed]

• Dorsal root ganglion (primary somatosensory) neurons (Rho & Prescott 2012) [Model]

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• Rhesus Monkey Young and Aged L3 PFC Pyramidal Neurons (Rumbell et al. 2016) [Model]

Tobin AE, Calabrese RL. (2006). Endogenous and half-center bursting in morphologically inspired models of leech heart interneurons. Journal of neurophysiology. 96 [PubMed]

Tobin AE, Van Hooser SD, Calabrese RL. (2006). Creation and reduction of a morphologically detailed model of a leech heart interneuron. Journal of neurophysiology. 96 [PubMed]

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• Reduced-morphology model of CA1 pyramidal cells optimized + validated w/ HippoUnit (Tomko et al '21) [Model]

Venkadesh S et al. (2018). Evolving Simple Models of Diverse Intrinsic Dynamics in Hippocampal Neuron Types. Frontiers in neuroinformatics. 12 [PubMed]

• Evolving simple models of diverse dynamics in hippocampal neuron types (Venkadesh et al 2018) [Model]

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• Parallel Tempering MCMC on Liu et al 1998 (Wang et al 2022) [Model]

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• A modified Morris-Lecar model with gM and gAHP (Yang et al., 2022) [Model]

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• LP neuron model database (Zang and Marder 2023) [Model]