Basak R, Narayanan R. (2018). Active dendrites regulate the spatiotemporal spread of signaling microdomains. PLoS computational biology. 14 [PubMed]

• Active dendrites shape signaling microdomains in hippocampal neurons (Basak & Narayanan 2018) [Model]

Bhalla US. (2011). Multiscale interactions between chemical and electric signaling in LTP induction, LTP reversal and dendritic excitability. Neural networks : the official journal of the International Neural Network Society. 24 [PubMed]

• Multiscale interactions between chemical and electric signaling in LTP (Bhalla 2011) [Model]

Chay A, Zamparo I, Koschinski A, Zaccolo M, Blackwell KT. (2016). Control of ßAR- and N-methyl-D-aspartate (NMDA) Receptor-Dependent cAMP Dynamics in Hippocampal Neurons. PLoS computational biology. 12 [PubMed]

• CA1 pyramidal cell receptor dependent cAMP dynamics (Chay et al. 2016) [Model]

Clopath C, Ziegler L, Vasilaki E, Büsing L, Gerstner W. (2008). Tag-trigger-consolidation: a model of early and late long-term-potentiation and depression. PLoS computational biology. 4 [PubMed]

• Tag Trigger Consolidation (Clopath and Ziegler et al. 2008) [Model]

Graupner M, Brunel N. (2007). STDP in a bistable synapse model based on CaMKII and associated signaling pathways. PLoS computational biology. 3 [PubMed]

• CaMKII system exhibiting bistability with respect to calcium (Graupner and Brunel 2007) [Model]

Jȩdrzejewska-Szmek J, Luczak V, Abel T, Blackwell KT. (2017). ß-adrenergic signaling broadly contributes to LTP induction. PLoS computational biology. 13 [PubMed]

• Signaling pathways underlying LTP in hippocampal CA1 pyramidal cells (Jedrzejewska-Szmek et al 2017) [Model]

Kim M, Huang T, Abel T, Blackwell KT. (2010). Temporal sensitivity of protein kinase a activation in late-phase long term potentiation. PLoS computational biology. 6 [PubMed]

• Hippocampus CA1: Temporal sensitivity of signaling pathways underlying LTP (Kim et al. 2010) [Model]

Lindskog M, Kim M, Wikström MA, Blackwell KT, Kotaleski JH. (2006). Transient calcium and dopamine increase PKA activity and DARPP-32 phosphorylation. PLoS computational biology. 2 [PubMed]

• Model of DARPP-32 phosphorylation in striatal medium spiny neurons (Lindskog et al. 2006) [Model]

Manninen T, Hituri K, Kotaleski JH, Blackwell KT, Linne ML. (2010). Postsynaptic signal transduction models for long-term potentiation and depression. Frontiers in computational neuroscience. 4 [PubMed]

Mattioni M, Le Novère N. (2013). Integration of biochemical and electrical signaling-multiscale model of the medium spiny neuron of the striatum. PloS one. 8 [PubMed]

• Multiscale simulation of the striatal medium spiny neuron (Mattioni & Le Novere 2013) [Model]

Mäki-Marttunen T, Iannella N, Edwards AG, Einevoll GT, Blackwell KT. (2020). A unified computational model for cortical post-synaptic plasticity. eLife. 9 [PubMed]

• Biochemically detailed model of LTP and LTD in a cortical spine (Maki-Marttunen et al 2020) [Model]

Nakano T, Doi T, Yoshimoto J, Doya K. (2010). A kinetic model of dopamine- and calcium-dependent striatal synaptic plasticity. PLoS computational biology. 6 [PubMed]

• A kinetic model of dopamine- and calcium-dependent striatal synaptic plasticity (Nakano et al. 2010) [Model]

O'Donnell C, Nolan MF, van Rossum MC. (2011). Dendritic spine dynamics regulate the long-term stability of synaptic plasticity. The Journal of neuroscience : the official journal of the Society for Neuroscience. 31 [PubMed]

• CA1 pyramidal neuron dendritic spine with plasticity (O`Donnell et al. 2011) [Model]

Oliveira RF, Kim M, Blackwell KT. (2012). Subcellular location of PKA controls striatal plasticity: stochastic simulations in spiny dendrites. PLoS computational biology. 8 [PubMed]

• Dopamine activation of signaling pathways in a medium spiny projection neuron (Oliveira et al. 2012) [Model]

Smolen P. (2015). Modeling maintenance of long-term potentiation in clustered synapses: long-term memory without bistability. Neural plasticity. 2015 [PubMed]

• Modeling maintenance of Long-Term Potentiation in clustered synapses (Smolen 2015) [Model]

Smolen P, Baxter DA, Byrne JH. (2006). A model of the roles of essential kinases in the induction and expression of late long-term potentiation. Biophysical journal. 90 [PubMed]

• Roles of essential kinases in induction of late hippocampal LTP (Smolen et al., 2006) [Model]

Sterratt DC, Graham B, Gillies A, Willshaw D. (2011). Principles of Computational Modelling in Neuroscience, Cambridge University Press.

• Principles of Computational Modelling in Neuroscience (Book) (Sterratt et al. 2011) [Model]

Urakubo H, Honda M, Froemke RC, Kuroda S. (2008). Requirement of an allosteric kinetics of NMDA receptors for spike timing-dependent plasticity. The Journal of neuroscience : the official journal of the Society for Neuroscience. 28 [PubMed]

• An allosteric kinetics of NMDARs in STDP (Urakubo et al. 2008) [Model]