Behabadi BF, Polsky A, Jadi M, Schiller J, Mel BW. (2012). Location-dependent excitatory synaptic interactions in pyramidal neuron dendrites. PLoS computational biology. 8 [PubMed]

• Excitatory synaptic interactions in pyramidal neuron dendrites (Behabadi et al. 2012) [Model]

Bilash OM, Chavlis S, Johnson CD, Poirazi P, Basu J. (2023). Lateral entorhinal cortex inputs modulate hippocampal dendritic excitability by recruiting a local disinhibitory microcircuit. Cell reports. 42 [PubMed]

• Hippocampal CA1 microcircuit model including somatic and dendritic inhibition (Bilash et al, 2023) [Model]

Bloss EB et al. (2016). Structured Dendritic Inhibition Supports Branch-Selective Integration in CA1 Pyramidal Cells. Neuron. 89 [PubMed]

• CA1 pyramidal neuron synaptic integration (Bloss et al. 2016) [Model]

Branco T, Häusser M. (2011). Synaptic integration gradients in single cortical pyramidal cell dendrites. Neuron. 69 [PubMed]

• Dendritic Discrimination of Temporal Input Sequences (Branco et al. 2010) [Model]

Dewell RB, Gabbiani F. (2018). Biophysics of object segmentation in a collision-detecting neuron. eLife. 7 [PubMed]

• LGMD with 3D morphology and active dendrites (Dewell & Gabbiani 2018) [Model]

Egger R et al. (2020). Cortical Output Is Gated by Horizontally Projecting Neurons in the Deep Layers Neuron. 105

• Sensory-evoked responses of L5 pyramidal tract neurons (Egger et al 2020) [Model]

Evans BD, Jarvis S, Schultz SR, Nikolic K. (2016). PyRhO: A Multiscale Optogenetics Simulation Platform. Frontiers in neuroinformatics. 10 [PubMed]

• PyRhO: A multiscale optogenetics simulation platform (Evans et al 2016) [Model]

Golomb D et al. (2017). Mechanisms underlying a thalamocortical transformation during active tactile sensation PLoS Comput Biol. 13(6)

• L4 cortical barrel NN model receiving thalamic input during whisking or touch (Gutnisky et al. 2017) [Model]

Hawkins J, Ahmad S. (2016). Why Neurons Have Thousands of Synapses, a Theory of Sequence Memory in Neocortex. Frontiers in neural circuits. 10 [PubMed]

• Theory of sequence memory in neocortex (Hawkins & Ahmad 2016) [Model]

Hooks BM et al. (2011). Laminar analysis of excitatory local circuits in vibrissal motor and sensory cortical areas. PLoS biology. 9 [PubMed]

• Laminar analysis of excitatory circuits in vibrissal motor and sensory cortex (Hooks et al. 2011) [Model]

Konstantoudaki X, Papoutsi A, Chalkiadaki K, Poirazi P, Sidiropoulou K. (2014). Modulatory effects of inhibition on persistent activity in a cortical microcircuit model. Frontiers in neural circuits. 8 [PubMed]

• Pyramidal neuron, fast, regular, and irregular spiking interneurons (Konstantoudaki et al 2014) [Model]

Larkum ME, Nevian T, Sandler M, Polsky A, Schiller J. (2009). Synaptic integration in tuft dendrites of layer 5 pyramidal neurons: a new unifying principle. Science (New York, N.Y.). 325 [PubMed]

• Synaptic integration in tuft dendrites of layer 5 pyramidal neurons (Larkum et al. 2009) [Model]

Ness TV, Remme MW, Einevoll GT. (2016). Active subthreshold dendritic conductances shape the local field potential. The Journal of physiology. 594 [PubMed]

Papoutsi A, Sidiropoulou K, Cutsuridis V, Poirazi P. (2013). Induction and modulation of persistent activity in a layer V PFC microcircuit model. Frontiers in neural circuits. 7 [PubMed]

• L5 PFC microcircuit used to study persistent activity (Papoutsi et al. 2014, 2013) [Model]

Papoutsi A, Sidiropoulou K, Poirazi P. (2014). Dendritic nonlinearities reduce network size requirements and mediate ON and OFF states of persistent activity in a PFC microcircuit model. PLoS computational biology. 10 [PubMed]

• L5 PFC microcircuit used to study persistent activity (Papoutsi et al. 2014, 2013) [Model]

Rindner DJ, Proddutur A, Lur G. (2022). Cell-type specific integration of feedforward and feedback synaptic inputs in the posterior parietal cortex Neuron. 110 [PubMed]

• Cell-type specific integration of feedforward and feedback synaptic inputs (Ridner et al, 2022) [Model]

Schulz JM, Knoflach F, Hernandez MC, Bischofberger J. (2018). Dendrite-targeting interneurons control synaptic NMDA-receptor activation via nonlinear a5-GABAA receptors. Nature communications. 9 [PubMed]

• CA1 pyramidal neuron: nonlinear a5-GABAAR controls synaptic NMDAR activation (Schulz et al 2018) [Model]
• Single compartment: nonlinear a5-GABAAR controls synaptic NMDAR activation (Schulz et al 2018) [Model]

Yang GR, Murray JD, Wang XJ. (2016). A dendritic disinhibitory circuit mechanism for pathway-specific gating. Nature communications. 7 [PubMed]

• A dendritic disinhibitory circuit mechanism for pathway-specific gating (Yang et al. 2016) [Model]