Aumentado-Armstrong T, Metzen MG, Sproule MK, Chacron MJ. (2015). Electrosensory Midbrain Neurons Display Feature Invariant Responses to Natural Communication Stimuli. PLoS computational biology. 11 [PubMed]

• Midbrain torus semicircularis neuron model (Aumentado-Armstrong et al. 2015) [Model]

Bahl A, Stemmler MB, Herz AV, Roth A. (2012). Automated optimization of a reduced layer 5 pyramidal cell model based on experimental data. Journal of neuroscience methods. 210 [PubMed]

• A set of reduced models of layer 5 pyramidal neurons (Bahl et al. 2012) [Model]

Caplan JS, Williams AH, Marder E. (2014). Many parameter sets in a multicompartment model oscillator are robust to temperature perturbations. The Journal of neuroscience : the official journal of the Society for Neuroscience. 34 [PubMed]

• Temperature-Dependent Pyloric Pacemaker Kernel (Caplan JS et al., 2014) [Model]

Chen E, Stiefel KM, Sejnowski TJ, Bullock TH. (2008). Model of traveling waves in a coral nerve network. Journal of comparative physiology. A, Neuroethology, sensory, neural, and behavioral physiology. 194 [PubMed]

De Schutter E. (2014). The dangers of plug-and-play simulation using shared models. Neuroinformatics. 12 [PubMed]

Guo T et al. (2016). Electrical activity of ON and OFF retinal ganglion cells: a modelling study. Journal of neural engineering. 13 [PubMed]

• Retinal ganglion cells responses and activity (Tsai et al 2012, Guo et al 2016) [Model]

Günay C, Edgerton JR, Jaeger D. (2008). Channel density distributions explain spiking variability in the globus pallidus: a combined physiology and computer simulation database approach. The Journal of neuroscience : the official journal of the Society for Neuroscience. 28 [PubMed]

• Globus pallidus multi-compartmental model neuron with realistic morphology (Gunay et al. 2008) [Model]

Günay C, Prinz AA. (2010). Model calcium sensors for network homeostasis: sensor and readout parameter analysis from a database of model neuronal networks. The Journal of neuroscience : the official journal of the Society for Neuroscience. 30 [PubMed]

• Lobster STG pyloric network model with calcium sensor (Gunay & Prinz 2010) (Prinz et al. 2004) [Model]

Hendrickson EB, Edgerton JR, Jaeger D. (2011). The capabilities and limitations of conductance-based compartmental neuron models with reduced branched or unbranched morphologies and active dendrites. Journal of computational neuroscience. 30 [PubMed]

• Comparison of full and reduced globus pallidus models (Hendrickson 2010) [Model]

Hendrickson EB, Edgerton JR, Jaeger D. (2011). The use of automated parameter searches to improve ion channel kinetics for neural modeling. Journal of computational neuroscience. 31 [PubMed]

Huys QJ, Paninski L. (2009). Smoothing of, and parameter estimation from, noisy biophysical recordings. PLoS computational biology. 5 [PubMed]

• Smoothing of, and parameter estimation from, noisy biophysical recordings (Huys & Paninski 2009) [Model]

Kobayashi R, Tsubo Y, Shinomoto S. (2009). Made-to-order spiking neuron model equipped with a multi-timescale adaptive threshold. Frontiers in computational neuroscience. 3 [PubMed]

• Multi-timescale adaptive threshold model (Kobayashi et al 2009) (NEURON) [Model]
• Multi-timescale adaptive threshold model (Kobayashi et al 2009) [Model]

Komendantov AO, Trayanova NA, Tasker JG. (2007). Somato-dendritic mechanisms underlying the electrophysiological properties of hypothalamic magnocellular neuroendocrine cells: a multicompartmental model study. Journal of computational neuroscience. 23 [PubMed]

Kozloski J, Wagner J. (2011). An Ultrascalable Solution to Large-scale Neural Tissue Simulation. Frontiers in neuroinformatics. 5 [PubMed]

Lepora NF, Overton PG, Gurney K. (2012). Efficient fitting of conductance-based model neurons from somatic current clamp. Journal of computational neuroscience. 32 [PubMed]

• Parameter estimation for Hodgkin-Huxley based models of cortical neurons (Lepora et al. 2011) [Model]

Masoli S, Solinas S, D'Angelo E. (2015). Action potential processing in a detailed Purkinje cell model reveals a critical role for axonal compartmentalization. Frontiers in cellular neuroscience. 9 [PubMed]

• A detailed Purkinje cell model (Masoli et al 2015) [Model]

Mensi S et al. (2012). Parameter extraction and classification of three cortical neuron types reveals two distinct adaptation mechanisms. Journal of neurophysiology. 107 [PubMed]

• Extraction and classification of three cortical neuron types (Mensi et al. 2012) [Model]

Mäki-Marttunen T et al. (2018). A stepwise neuron model fitting procedure designed for recordings with high spatial resolution: Application to layer 5 pyramidal cells. Journal of neuroscience methods. 293 [PubMed]

• Layer V pyramidal cell model with reduced morphology (Mäki-Marttunen et al 2018) [Model]

Nowotny T, Levi R, Selverston AI. (2008). Probing the dynamics of identified neurons with a data-driven modeling approach. PloS one. 3 [PubMed]

• Data-driven, HH-type model of the lateral pyloric (LP) cell in the STG (Nowotny et al. 2008) [Model]

Olypher AV, Calabrese RL. (2007). Using constraints on neuronal activity to reveal compensatory changes in neuronal parameters. Journal of neurophysiology. 98 [PubMed]

• Activity constraints on stable neuronal or network parameters (Olypher and Calabrese 2007) [Model]

Pospischil M et al. (2008). Minimal Hodgkin-Huxley type models for different classes of cortical and thalamic neurons. Biological cybernetics. 99 [PubMed]

• Hodgkin-Huxley models of different classes of cortical neurons (Pospischil et al. 2008) [Model]

Rumbell T, Kozloski J. (2019). Dimensions of control for subthreshold oscillations and spontaneous firing in dopamine neurons PLOS Computational Biology. 15

• Control of oscillations and spontaneous firing in dopamine neurons (Rumbell & Kozloski 2019) [Model]

Rumbell TH et al. (2016). Automated evolutionary optimization of ion channel conductances and kinetics in models of young and aged rhesus monkey pyramidal neurons. Journal of computational neuroscience. 41 [PubMed]

• Rhesus Monkey Young and Aged L3 PFC Pyramidal Neurons (Rumbell et al. 2016) [Model]

Schultheiss NW, Edgerton JR, Jaeger D. (2010). Phase response curve analysis of a full morphological globus pallidus neuron model reveals distinct perisomatic and dendritic modes of synaptic integration. The Journal of neuroscience : the official journal of the Society for Neuroscience. 30 [PubMed]

• GP Neuron, somatic and dendritic phase response curves (Schultheiss et al. 2011) [Model]

Schwarzacher SW, Cuntz H, Jedlicka P, Beining M, Mongiat LA. (2017). T2N as a new tool for robust electrophysiological modeling demonstrated for mature and adult-born dentate granule cells eLife.

• GC model (Beining et al 2017) [Model]
• Mature and young adult-born dentate granule cell models (T2N interface) (Beining et al. 2017) [Model]

Solinas S et al. (2007). Computational reconstruction of pacemaking and intrinsic electroresponsiveness in cerebellar Golgi cells. Frontiers in cellular neuroscience. 1 [PubMed]

• Cerebellar Golgi cell (Solinas et al. 2007a, 2007b) [Model]

Sterratt DC, Graham B, Gillies A, Willshaw D. (2011). Principles of Computational Modelling in Neuroscience, Cambridge University Press.

• Principles of Computational Modelling in Neuroscience (Book) (Sterratt et al. 2011) [Model]

Steuber V, Schultheiss NW, Silver RA, De Schutter E, Jaeger D. (2011). Determinants of synaptic integration and heterogeneity in rebound firing explored with data-driven models of deep cerebellar nucleus cells. Journal of computational neuroscience. 30 [PubMed]

• Cerebellar Nucleus Neuron (Steuber, Schultheiss, Silver, De Schutter & Jaeger, 2010) [Model]
• Robust transmission in the inhibitory Purkinje Cell to Cerebellar Nuclei pathway (Abbasi et al 2017) [Model]

Stiefel KM, Sejnowski TJ. (2007). Mapping function onto neuronal morphology. Journal of neurophysiology. 98 [PubMed]

• Mapping function onto neuronal morphology (Stiefel and Sejnowski 2007) [Model]

Wang YC et al. (2022). Multimodal parameter spaces of a complex multi-channel neuron model Frontiers in systems neuroscience. 16 [PubMed]

• Parallel Tempering MCMC on Liu et al 1998 (Wang et al 2022) [Model]

Yang J, Shakil H, Ratté S, Prescott SA. (2022). Minimal requirements for a neuron to co-regulate many properties and the implications for ion channel correlations and robustness eLife. 11 [PubMed]

• A modified Morris-Lecar model with gM and gAHP (Yang et al., 2022) [Model]

Zang Y, Marder E. (2023). Neuronal morphology enhances robustness to perturbations of channel densities Proceedings of the National Academy of Sciences of the United States of America. 120 [PubMed]

• LP neuron model database (Zang and Marder 2023) [Model]

van Elburg RA, van Ooyen A. (2010). Impact of dendritic size and dendritic topology on burst firing in pyramidal cells. PLoS computational biology. 6 [PubMed]

• Impact of dendritic size and topology on pyramidal cell burst firing (van Elburg and van Ooyen 2010) [Model]