Andrasfalvy BK, Magee JC. (2001). Distance-dependent increase in AMPA receptor number in the dendrites of adult hippocampal CA1 pyramidal neurons. The Journal of neuroscience : the official journal of the Society for Neuroscience. 21 [PubMed]
Andrieu C, Doucet A, Godsill S. (2000). On sequential Monte Carlo sampling methods for Bayesian filtering Stat Comput. 10
Antic S, Major G, Zecevic D. (1999). Fast optical recordings of membrane potential changes from dendrites of pyramidal neurons. Journal of neurophysiology. 82 [PubMed]
Artalejo CR, Adams ME, Fox AP. (1994). Three types of Ca2+ channel trigger secretion with different efficacies in chromaffin cells. Nature. 367 [PubMed]
Baker BJ et al. (2005). Imaging brain activity with voltage- and calcium-sensitive dyes. Cellular and molecular neurobiology. 25 [PubMed]
Baldi P, Vanier MC, Bower JM. (1998). On the use of Bayesian methods for evaluating compartmental neural models. Journal of computational neuroscience. 5 [PubMed]
Bekkers JM. (2000). Distribution and activation of voltage-gated potassium channels in cell-attached and outside-out patches from large layer 5 cortical pyramidal neurons of the rat. The Journal of physiology. 525 Pt 3 [PubMed]
Bell J, Craciun G. (2003). A distributed parameter identification problem in neuronal cable theory models MBI-OSU TR-6.
Bhalla US, Bower JM. (1993). Exploring parameter space in detailed single neuron models: simulations of the mitral and granule cells of the olfactory bulb. Journal of neurophysiology. 69 [PubMed]
Boucsein C, Nawrot M, Rotter S, Aertsen A, Heck D. (2005). Controlling synaptic input patterns in vitro by dynamic photo stimulation. Journal of neurophysiology. 94 [PubMed]
Boyd S, Vandenberghe L. (2004). Convex optimization.
Bullen A, Patel SS, Saggau P. (1997). High-speed, random-access fluorescence microscopy: I. High-resolution optical recording with voltage-sensitive dyes and ion indicators. Biophysical journal. 73 [PubMed]
Colquhoun D, Hawkes AG. (1977). Relaxation and fluctuations of membrane currents that flow through drug-operated channels. Proceedings of the Royal Society of London. Series B, Biological sciences. 199 [PubMed]
Cox SJ. (2004). Estimating the location and time course of synaptic input from multi-site potential recordings. Journal of computational neuroscience. 17 [PubMed]
Dayan P, Abbott L. (2001). Neural encoding: Firing rates and spike statistics Theoretical Neuroscience: Computational and Mathematical Modeling of Neural Systems.
Destexhe A, Rudolph M, Paré D. (2003). The high-conductance state of neocortical neurons in vivo. Nature reviews. Neuroscience. 4 [PubMed]
Djurisic M, Antic S, Chen WR, Zecevic D. (2004). Voltage imaging from dendrites of mitral cells: EPSP attenuation and spike trigger zones. The Journal of neuroscience : the official journal of the Society for Neuroscience. 24 [PubMed]
Djurisić M, Zecević D. (2005). Imaging of spiking and subthreshold activity of mitral cells with voltage-sensitive dyes. Annals of the New York Academy of Sciences. 1048 [PubMed]
Eder M et al. (2003). Distribution and properties of functional postsynaptic kainate receptors on neocortical layer V pyramidal neurons. The Journal of neuroscience : the official journal of the Society for Neuroscience. 23 [PubMed]
Fellous JM, Rudolph M, Destexhe A, Sejnowski TJ. (2003). Synaptic background noise controls the input/output characteristics of single cells in an in vitro model of in vivo activity. Neuroscience. 122 [PubMed]
Fisher JA, Salzberg BM, Yodh AG. (2005). Near infrared two-photon excitation cross-sections of voltage-sensitive dyes. Journal of neuroscience methods. 148 [PubMed]
Frick A, Zieglgänsberger W, Dodt HU. (2001). Glutamate receptors form hot spots on apical dendrites of neocortical pyramidal neurons. Journal of neurophysiology. 86 [PubMed]
Gold C, Henze DA, Koch C, Buzsáki G. (2006). On the origin of the extracellular action potential waveform: A modeling study. Journal of neurophysiology. 95 [PubMed]
Goldman MS, Golowasch J, Marder E, Abbott LF. (2001). Global structure, robustness, and modulation of neuronal models. The Journal of neuroscience : the official journal of the Society for Neuroscience. 21 [PubMed]
Golowasch J, Goldman MS, Abbott LF, Marder E. (2002). Failure of averaging in the construction of a conductance-based neuron model. Journal of neurophysiology. 87 [PubMed]
HODGKIN AL, HUXLEY AF. (1952). A quantitative description of membrane current and its application to conduction and excitation in nerve. The Journal of physiology. 117 [PubMed]
Hines ML, Davison AP, Morse TM. (2001). Parameter space reduction in neuron model optimization through minimization of residual voltage clamp current Program No. 606.5. 2001 Abstract Viewer-Itinerary Planner.
Hoffman DA, Magee JC, Colbert CM, Johnston D. (1997). K+ channel regulation of signal propagation in dendrites of hippocampal pyramidal neurons. Nature. 387 [PubMed]
Häusser M. (2003). Revealing the properties of dendritic voltage-gated channels: a new approach to the space clamp problem. Biophysical journal. 84 [PubMed]
Häusser M, Roth A. (1997). Estimating the time course of the excitatory synaptic conductance in neocortical pyramidal cells using a novel voltage jump method. The Journal of neuroscience : the official journal of the Society for Neuroscience. 17 [PubMed]
Iyer V, Hoogland TM, Saggau P. (2006). Fast functional imaging of single neurons using random-access multiphoton (RAMP) microscopy. Journal of neurophysiology. 95 [PubMed]
Jolivet R, Lewis TJ, Gerstner W. (2004). Generalized integrate-and-fire models of neuronal activity approximate spike trains of a detailed model to a high degree of accuracy. Journal of neurophysiology. 92 [PubMed]
Kaufer D, Friedman A, Seidman S, Soreq H. (1998). Acute stress facilitates long-lasting changes in cholinergic gene expression. Nature. 393 [PubMed]
Keren N, Peled N, Korngreen A. (2005). Constraining compartmental models using multiple voltage recordings and genetic algorithms. Journal of neurophysiology. 94 [PubMed]
Kistler WM, Gerstner W. (2002). Spiking neuron models.
Koch C. (1999). Biophysics Of Computation: Information Processing in Single Neurons.
Koch C, Segev I. (2000). The role of single neurons in information processing. Nature neuroscience. 3 Suppl [PubMed]
Koch C, Zador A. (1993). The function of dendritic spines: devices subserving biochemical rather than electrical compartmentalization. The Journal of neuroscience : the official journal of the Society for Neuroscience. 13 [PubMed]
Kurths J, Timmer J, Voss HU. (2004). Nonlinear dynamical system identification from uncertain and indirect measurements Int J Bifurc Chaos. 14
Kurts C et al. (1999). Signalling through CD30 protects against autoimmune diabetes mediated by CD8 T cells. Nature. 398 [PubMed]
Lee DD, Saul LK, Sha F. (2003). Multiplicative updates for nonnegative quadratic programming in support vector machines Advances in Neural Information Processing Systems 15 (Proceedings of NIPS02).
London M, Häusser M. (2005). Dendritic computation. Annual review of neuroscience. 28 [PubMed]
London M, Segev I. (2001). Synaptic scaling in vitro and in vivo. Nature neuroscience. 4 [PubMed]
MacKay DJ. (2003). Information Theory, Inference and Learning Algorithms.
Magee JC. (1998). Dendritic hyperpolarization-activated currents modify the integrative properties of hippocampal CA1 pyramidal neurons. The Journal of neuroscience : the official journal of the Society for Neuroscience. 18 [PubMed]
Magee JC, Cook EP. (2000). Somatic EPSP amplitude is independent of synapse location in hippocampal pyramidal neurons. Nature neuroscience. 3 [PubMed]
Magee JC, Cook EP. (2001). Synaptic scaling in vitro and in vivo - Reply Nature Neuroscience. 4
Magee JC, Johnston D. (1995). Characterization of single voltage-gated Na+ and Ca2+ channels in apical dendrites of rat CA1 pyramidal neurons. The Journal of physiology. 487 [PubMed]
Nuriya M, Jiang J, Nemet B, Eisenthal KB, Yuste R. (2006). Imaging membrane potential in dendritic spines. Proceedings of the National Academy of Sciences of the United States of America. 103 [PubMed]
Ohshiro T, Yagami T, Zhang C, Matsuzaki F. (2000). Role of cortical tumour-suppressor proteins in asymmetric division of Drosophila neuroblast. Nature. 408 [PubMed]
Paninski L. (2005). Asymptotic theory of information-theoretic experimental design. Neural computation. 17 [PubMed]
Paninski L, Ahrens MB, Huys QJM. (2006). Large-scale biophysical parameter estimation in single neurons via contrained linear regression Advances in Neural Information Processing Systems 18 (Proceedings of NIPS05).
Pei X, Volgushev M, Vidyasagar TR, Creutzfeldt OD. (1991). Whole cell recording and conductance measurements in cat visual cortex in-vivo. Neuroreport. 2 [PubMed]
Platt JC. (1998). Sequential minimal optimization: a fast algorithm for training support vector machines Technical Report MSR-TR-98-14.
Poirazi P, Brannon T, Mel BW. (2003). Arithmetic of subthreshold synaptic summation in a model CA1 pyramidal cell. Neuron. 37 [PubMed]
Poirazi P, Brannon T, Mel BW. (2003). Pyramidal neuron as two-layer neural network. Neuron. 37 [PubMed]
Press WH, Teukolsky SA, Flannery BP, Vellerling WT. (1992). Numerical Recipes In C: The Art Of Scientific Computing.
Prinz AA, Billimoria CP, Marder E. (2003). Alternative to hand-tuning conductance-based models: construction and analysis of databases of model neurons. Journal of neurophysiology. 90 [PubMed]
Rall W. (1967). Distinguishing theoretical synaptic potentials computed for different soma-dendritic distributions of synaptic input. Journal of neurophysiology. 30 [PubMed]
Rasmussen CE, Solak E, Murray-smith R, Leithead WE, Leith DJ. (2003). Derivative observations in Gaussian process models of dynamic systems Advances in Neural Information Processing Systems 15 (Proceedings of NIPS02).
Reyes A. (2001). Influence of dendritic conductances on the input-output properties of neurons. Annual review of neuroscience. 24 [PubMed]
Roth A, Häusser M. (2001). Compartmental models of rat cerebellar Purkinje cells based on simultaneous somatic and dendritic patch-clamp recordings. The Journal of physiology. 535 [PubMed]
Rudolph M, Destexhe A. (2003). Characterization of subthreshold voltage fluctuations in neuronal membranes. Neural computation. 15 [PubMed]
Safronov BV, Wolff M, Vogel W. (2000). Excitability of the soma in central nervous system neurons. Biophysical journal. 78 [PubMed]
Schaefer AT, Helmstaedter M, Sakmann B, Korngreen A. (2003). Correction of conductance measurements in non-space-clamped structures: 1. Voltage-gated K+ channels. Biophysical journal. 84 [PubMed]
Schaefer AT, Larkum ME, Sakmann B, Roth A. (2003). Coincidence detection in pyramidal neurons is tuned by their dendritic branching pattern. Journal of neurophysiology. 89 [PubMed]
Schwartz O, Simoncelli EP, Paninski L, Pillow J. (2004). Characterization of neural responses with stochastic stimuli The New Cognitive Neurosciences (3rd ed).
Slee SJ, Higgs MH, Fairhall AL, Spain WJ. (2005). Two-dimensional time coding in the auditory brainstem. The Journal of neuroscience : the official journal of the Society for Neuroscience. 25 [PubMed]
Smith A, Doucet A, Defreitas N, Gordon N. (2001). Sequential Monte Carlo methods in practice.
Spruston N, Jonas P, Sakmann B. (1995). Dendritic glutamate receptor channels in rat hippocampal CA3 and CA1 pyramidal neurons. The Journal of physiology. 482 ( Pt 2) [PubMed]
Tsien RW, Noble D, Jack JJB. (1975). Electric Current Flow in Excitable Cells.
Vanier MC, Bower JM. (1999). A comparative survey of automated parameter-search methods for compartmental neural models. Journal of computational neuroscience. 7 [PubMed]
Vetter P, Roth A, Häusser M. (2001). Propagation of action potentials in dendrites depends on dendritic morphology. Journal of neurophysiology. 85 [PubMed]
Wagner N et al. (1996). Critical role for beta7 integrins in formation of the gut-associated lymphoid tissue. Nature. 382 [PubMed]
Williams SR, Stuart GJ. (2003). Voltage- and site-dependent control of the somatic impact of dendritic IPSPs. The Journal of neuroscience : the official journal of the Society for Neuroscience. 23 [PubMed]
Wilson CJ, Gurney KN, Wood R. (2004). A novel parameter optimization technique for compartmental models applied to a model of a striatal mediumspiny neuron Neurocomputing. 60
Wolfart J, Debay D, Le Masson G, Destexhe A, Bal T. (2005). Synaptic background activity controls spike transfer from thalamus to cortex. Nature neuroscience. 8 [PubMed]
Almog M, Korngreen A. (2014). A Quantitative Description of Dendritic Conductances and Its Application to Dendritic Excitation in Layer 5 Pyramidal Neurons The Journal of neuroscience : the official journal of the Society for Neuroscience. 34 [PubMed]
Badel L et al. (2008). Dynamic I-V curves are reliable predictors of naturalistic pyramidal-neuron voltage traces. Journal of neurophysiology. 99 [PubMed]
Friedrich P, Vella M, Gulyás AI, Freund TF, Káli S. (2014). A flexible, interactive software tool for fitting the parameters of neuronal models. Frontiers in neuroinformatics. 8 [PubMed]
Gold C, Henze DA, Koch C. (2007). Using extracellular action potential recordings to constrain compartmental models. Journal of computational neuroscience. 23 [PubMed]
Hendrickson EB, Edgerton JR, Jaeger D. (2011). The capabilities and limitations of conductance-based compartmental neuron models with reduced branched or unbranched morphologies and active dendrites. Journal of computational neuroscience. 30 [PubMed]
Hong S, Agüera y Arcas B, Fairhall AL. (2007). Single neuron computation: from dynamical system to feature detector. Neural computation. 19 [PubMed]
Huys QJ, Paninski L. (2009). Smoothing of, and parameter estimation from, noisy biophysical recordings. PLoS computational biology. 5 [PubMed]
Jolivet R et al. (2008). A benchmark test for a quantitative assessment of simple neuron models. Journal of neuroscience methods. 169 [PubMed]
Kobayashi R, Tsubo Y, Shinomoto S. (2009). Made-to-order spiking neuron model equipped with a multi-timescale adaptive threshold. Frontiers in computational neuroscience. 3 [PubMed]
Lepora NF, Overton PG, Gurney K. (2012). Efficient fitting of conductance-based model neurons from somatic current clamp. Journal of computational neuroscience. 32 [PubMed]
Mensi S et al. (2012). Parameter extraction and classification of three cortical neuron types reveals two distinct adaptation mechanisms. Journal of neurophysiology. 107 [PubMed]
Nowotny T, Levi R, Selverston AI. (2008). Probing the dynamics of identified neurons with a data-driven modeling approach. PloS one. 3 [PubMed]
Rumbell TH et al. (2016). Automated evolutionary optimization of ion channel conductances and kinetics in models of young and aged rhesus monkey pyramidal neurons. Journal of computational neuroscience. 41 [PubMed]
Soudry D, Meir R. (2014). The neuronal response at extended timescales: a linearized spiking input-output relation. Frontiers in computational neuroscience. 8 [PubMed]
Sterratt DC, Graham B, Gillies A, Willshaw D. (2011). Principles of Computational Modelling in Neuroscience, Cambridge University Press.
Ujfalussy BB, Makara JK, Lengyel M, Branco T. (2018). Global and Multiplexed Dendritic Computations under In Vivo-like Conditions. Neuron. 100 [PubMed]