Acker CD, White JA. (2007). Roles of IA and morphology in action potential propagation in CA1 pyramidal cell dendrites. Journal of computational neuroscience. 23 [PubMed]

• Roles of I(A) and morphology in AP prop. in CA1 pyramidal cell dendrites (Acker and White 2007) [Model]

Ariav G, Polsky A, Schiller J. (2003). Submillisecond precision of the input-output transformation function mediated by fast sodium dendritic spikes in basal dendrites of CA1 pyramidal neurons. The Journal of neuroscience : the official journal of the Society for Neuroscience. 23 [PubMed]

Ascoli GA, Gasparini S, Medinilla V, Migliore M. (2010). Local control of postinhibitory rebound spiking in CA1 pyramidal neuron dendrites. The Journal of neuroscience : the official journal of the Society for Neuroscience. 30 [PubMed]

• CA1 pyramidal neuron: rebound spiking (Ascoli et al.2010) [Model]

Basak R, Narayanan R. (2018). Active dendrites regulate the spatiotemporal spread of signaling microdomains. PLoS computational biology. 14 [PubMed]

• Active dendrites shape signaling microdomains in hippocampal neurons (Basak & Narayanan 2018) [Model]

Behabadi BF, Polsky A, Jadi M, Schiller J, Mel BW. (2012). Location-dependent excitatory synaptic interactions in pyramidal neuron dendrites. PLoS computational biology. 8 [PubMed]

• Excitatory synaptic interactions in pyramidal neuron dendrites (Behabadi et al. 2012) [Model]

Bianchi D et al. (2014). Effects of increasing CREB-dependent transcription on the storage and recall processes in a hippocampal CA1 microcircuit. Hippocampus. 24 [PubMed]

• Effects of increasing CREB on storage and recall processes in a CA1 network (Bianchi et al. 2014) [Model]

Bilash OM, Chavlis S, Johnson CD, Poirazi P, Basu J. (2023). Lateral entorhinal cortex inputs modulate hippocampal dendritic excitability by recruiting a local disinhibitory microcircuit. Cell reports. 42 [PubMed]

• Hippocampal CA1 microcircuit model including somatic and dendritic inhibition (Bilash et al, 2023) [Model]

Bloss EB et al. (2016). Structured Dendritic Inhibition Supports Branch-Selective Integration in CA1 Pyramidal Cells. Neuron. 89 [PubMed]

• CA1 pyramidal neuron synaptic integration (Bloss et al. 2016) [Model]

Bloss EB et al. (2018). Single excitatory axons form clustered synapses onto CA1 pyramidal cell dendrites. Nature neuroscience. 21 [PubMed]

• Single excitatory axons form clustered synapses onto CA1 pyramidal cell dendrites (Bloss et al 2018) [Model]

Bock T, Negrean A, Siegelbaum SA. (2022). Somatic depolarization enhances hippocampal CA1 dendritic spike propagation and distal input-driven synaptic plasticity The Journal of neuroscience : the official journal of the Society for Neuroscience. 42 [PubMed]

• Depolarization Enhacement of Dendritic Spike Propagation (Bock et al 2022) [Model]

Bono J, Clopath C. (2017). Modeling somatic and dendritic spike mediated plasticity at the single neuron and network level. Nature communications. 8 [PubMed]

• Modeling dendritic spikes and plasticity (Bono and Clopath 2017) [Model]

Branco T, Clark BA, Häusser M. (2010). Dendritic discrimination of temporal input sequences in cortical neurons. Science (New York, N.Y.). 329 [PubMed]

• Dendritic Discrimination of Temporal Input Sequences (Branco et al. 2010) [Model]

Chiang CC, Shivacharan RS, Wei X, Gonzalez-Reyes LE, Durand DM. (2019). Slow periodic activity in the longitudinal hippocampal slice can self-propagate non-synaptically by a mechanism consistent with ephaptic coupling. The Journal of physiology. 597 [PubMed]

Clopath C, Büsing L, Vasilaki E, Gerstner W. (2010). Connectivity reflects coding: a model of voltage-based STDP with homeostasis. Nature neuroscience. 13 [PubMed]

• Voltage-based STDP synapse (Clopath et al. 2010) [Model]

Cutsuridis V, Cobb S, Graham BP. (2010). Encoding and retrieval in a model of the hippocampal CA1 microcircuit. Hippocampus. 20 [PubMed]

• Encoding and retrieval in a model of the hippocampal CA1 microcircuit (Cutsuridis et al. 2009) [Model]

Diwakar S, Magistretti J, Goldfarb M, Naldi G, D'Angelo E. (2009). Axonal Na+ channels ensure fast spike activation and back-propagation in cerebellar granule cells. Journal of neurophysiology. 101 [PubMed]

• Multicompartmental cerebellar granule cell model (Diwakar et al. 2009) [Model]

Dorman DB, Jędrzejewska-Szmek J, Blackwell KT. (2018). Inhibition enhances spatially-specific calcium encoding of synaptic input patterns in a biologically constrained model. eLife. 7 [PubMed]

• Striatal Spiny Projection Neuron, inhibition enhances spatial specificity (Dorman et al 2018) [Model]

Doron M, Chindemi G, Muller E, Markram H, Segev I. (2017). Timed Synaptic Inhibition Shapes NMDA Spikes, Influencing Local Dendritic Processing and Global I/O Properties of Cortical Neurons. Cell reports. 21 [PubMed]

• Shaping NMDA spikes by timed synaptic inhibition on L5PC (Doron et al. 2017) [Model]

Ebner C, Clopath C, Jedlicka P, Cuntz H. (2019). Unifying Long-Term Plasticity Rules for Excitatory Synapses by Modeling Dendrites of Cortical Pyramidal Neurons. Cell reports. 29 [PubMed]

• Four-pathway phenomenological synaptic plasticity model (Ebner et al. 2019) [Model]

Gasparini S, Migliore M, Magee JC. (2004). On the initiation and propagation of dendritic spikes in CA1 pyramidal neurons. The Journal of neuroscience : the official journal of the Society for Neuroscience. 24 [PubMed]

• CA1 pyramidal neuron: dendritic spike initiation (Gasparini et al 2004) [Model]

González-Rueda A, Pedrosa V, Feord RC, Clopath C, Paulsen O. (2018). Activity-Dependent Downscaling of Subthreshold Synaptic Inputs during Slow-Wave-Sleep-like Activity In Vivo. Neuron. 97 [PubMed]

• Feedforward network undergoing Up-state-mediated plasticity (Gonzalez-Rueda et al. 2018) [Model]

Guet-McCreight A, Camiré O, Topolnik L, Skinner FK. (2016). Using a Semi-Automated Strategy to Develop Multi-Compartment Models That Predict Biophysical Properties of Interneuron-Specific 3 (IS3) Cells in Hippocampus. eNeuro. 3 [PubMed]

• Interneuron Specific 3 Interneuron Model (Guet-McCreight et al, 2016) [Model]

Górski T et al. (2018). Dendritic sodium spikes endow neurons with inverse firing rate response to correlated synaptic activity. Journal of computational neuroscience. 45 [PubMed]

• Response to correlated synaptic input for HH/IF point neuron vs with dendrite (Górski et al 2018) [Model]

Hasselmo ME, Eichenbaum H. (2005). Hippocampal mechanisms for the context-dependent retrieval of episodes. Neural networks : the official journal of the International Neural Network Society. 18 [PubMed]

• Hippocampal context-dependent retrieval (Hasselmo and Eichenbaum 2005) [Model]

Häusser M. (2004). Storing memories in dendritic channels. Nature neuroscience. 7 [PubMed]

Häusser M, Mel B. (2003). Dendrites: bug or feature? Current opinion in neurobiology. 13 [PubMed]

Iannella N, Tanaka S. (2006). Synaptic efficacy cluster formation across the dendrite via STDP. Neuroscience letters. 403 [PubMed]

Jarsky T, Roxin A, Kath WL, Spruston N. (2005). Conditional dendritic spike propagation following distal synaptic activation of hippocampal CA1 pyramidal neurons. Nature neuroscience. 8 [PubMed]

• CA1 pyramidal neuron synaptic integration (Jarsky et al. 2005) [Model]

Jedlicka P, Benuskova L, Abraham WC. (2015). A Voltage-Based STDP Rule Combined with Fast BCM-Like Metaplasticity Accounts for LTP and Concurrent "Heterosynaptic" LTD in the Dentate Gyrus In Vivo. PLoS computational biology. 11 [PubMed]

• Modeling dentate granule cells heterosynaptic plasticity using STDP-BCM rule (Jedlicka et al. 2015) [Model]

Joels M, Poirazi P, Sidiropoulou K. (2007). Modeling stress-induced adaptations in Ca2+ dynamics Neurocomputing. 70

Kampa BM, Clements J, Jonas P, Stuart GJ. (2004). Kinetics of Mg2+ unblock of NMDA receptors: implications for spike-timing dependent synaptic plasticity. The Journal of physiology. 556 [PubMed]

• Kinetic NMDA receptor model (Kampa et al 2004) [Model]

Keren N, Peled N, Korngreen A. (2005). Constraining compartmental models using multiple voltage recordings and genetic algorithms. Journal of neurophysiology. 94 [PubMed]

Kim Y, Hsu CL, Cembrowski MS, Mensh BD, Spruston N. (2015). Dendritic sodium spikes are required for long-term potentiation at distal synapses on hippocampal pyramidal neurons. eLife. 4 [PubMed]

• CA1 pyramidal neuron: Dendritic Na+ spikes are required for LTP at distal synapses (Kim et al 2015) [Model]

Legenstein R, Maass W. (2011). Branch-specific plasticity enables self-organization of nonlinear computation in single neurons. The Journal of neuroscience : the official journal of the Society for Neuroscience. 31 [PubMed]

Luo X et al. (2020). Synaptic Mechanisms Underlying the Network State-Dependent Recruitment of VIP-Expressing Interneurons in the CA1 Hippocampus. Cerebral cortex (New York, N.Y. : 1991). 30 [PubMed]

• Hippocampus CA1 Interneuron Specific 3 (IS3) in vivo-like virtual NN simulations (Luo et al 2020) [Model]

Menon V et al. (2013). Balanced synaptic impact via distance-dependent synapse distribution and complementary expression of AMPARs and NMDARs in hippocampal dendrites. Neuron. 80 [PubMed]

• Distance-dependent synaptic strength in CA1 pyramidal neurons (Menon et al. 2013) [Model]

Mittmann W, Chadderton P, Häusser M. (2004). Neuronal microcircuits: frequency-dependent flow of inhibition. Current biology : CB. 14 [PubMed]

Mo CH, Gu M, Koch C. (2004). A learning rule for local synaptic interactions between excitation and shunting inhibition. Neural computation. 16 [PubMed]

Morita K. (2008). Possible role of dendritic compartmentalization in the spatial working memory circuit. The Journal of neuroscience : the official journal of the Society for Neuroscience. 28 [PubMed]

• Working memory circuit with branched dendrites (Morita 2008) [Model]

Nicholson DA et al. (2006). Distance-dependent differences in synapse number and AMPA receptor expression in hippocampal CA1 pyramidal neurons. Neuron. 50 [PubMed]

Rudolph M, Destexhe A. (2003). A fast-conducting, stochastic integrative mode for neocortical neurons in vivo. The Journal of neuroscience : the official journal of the Society for Neuroscience. 23 [PubMed]

Rumsey CC, Abbott LF. (2004). Equalization of synaptic efficacy by activity- and timing-dependent synaptic plasticity. Journal of neurophysiology. 91 [PubMed]

Saudargiene A, Cobb S, Graham BP. (2015). A computational study on plasticity during theta cycles at Schaffer collateral synapses on CA1 pyramidal cells in the hippocampus. Hippocampus. 25 [PubMed]

• CA1 pyramidal neuron: synaptic plasticity during theta cycles (Saudargiene et al. 2015) [Model]

Saudargiene A, Porr B, Wörgötter F. (2004). How the shape of pre- and postsynaptic signals can influence STDP: a biophysical model. Neural computation. 16 [PubMed]

Schmidt-Hieber C, Jonas P, Bischofberger J. (2007). Subthreshold dendritic signal processing and coincidence detection in dentate gyrus granule cells. The Journal of neuroscience : the official journal of the Society for Neuroscience. 27 [PubMed]

• Dentate gyrus granule cell: subthreshold signal processing (Schmidt-Hieber et al. 2007) [Model]

Schmidt-Hieber C et al. (2017). Active dendritic integration as a mechanism for robust and precise grid cell firing. Nature neuroscience. 20 [PubMed]

• Active dendritic integration in robust and precise grid cell firing (Schmidt-Hieber et al 2017) [Model]

Sun Q, Srinivas KV, Sotayo A, Siegelbaum SA. (2014). Dendritic Na+ spikes enable cortical input to drive action potential output from hippocampal CA2 pyramidal neurons. eLife. 3 [PubMed]

Tamosiunaite M, Porr B, Wörgötter F. (2007). Self-influencing synaptic plasticity: recurrent changes of synaptic weights can lead to specific functional properties. Journal of computational neuroscience. 23 [PubMed]

• Self-influencing synaptic plasticity (Tamosiunaite et al. 2007) [Model]

Ujfalussy BB, Makara JK, Lengyel M, Branco T. (2018). Global and Multiplexed Dendritic Computations under In Vivo-like Conditions. Neuron. 100 [PubMed]

• Global and multiplexed dendritic computations under in vivo-like conditions (Ujfalussy et al 2018) [Model]

Urakubo H, Aihara T, Kuroda S, Watanabe M, Kondo S. (2004). Spatial localization of synapses required for supralinear summation of action potentials and EPSPs. Journal of computational neuroscience. 16 [PubMed]

Williams SR, Stuart GJ. (2003). Role of dendritic synapse location in the control of action potential output. Trends in neurosciences. 26 [PubMed]

Wilmes KA, Sprekeler H, Schreiber S. (2016). Inhibition as a Binary Switch for Excitatory Plasticity in Pyramidal Neurons. PLoS computational biology. 12 [PubMed]

• Inhibition of bAPs and Ca2+ spikes in a multi-compartment pyramidal neuron model (Wilmes et al 2016) [Model]

Wörgötter F, Porr B. (2005). Temporal sequence learning, prediction, and control: a review of different models and their relation to biological mechanisms. Neural computation. 17 [PubMed]