Hippocampal CA1 NN with spontaneous theta, gamma: full scale & network clamp (Bezaire et al 2016)


Bezaire MJ, Raikov I, Burk K, Vyas D, Soltesz I. (2016). Interneuronal mechanisms of hippocampal theta oscillations in a full-scale model of the rodent CA1 circuit. eLife. 5 [PubMed]

See more from authors: Bezaire MJ · Raikov I · Burk K · Vyas D · Soltesz I

References and models cited by this paper

. (1999). 35th Annual Meeting of the European Association for the Study of Diabetes : Brussels, Belgium, 28 September-2 October 1999. Diabetologia. 42 [PubMed]

Akam TE, Kullmann DM. (2012). Efficient "communication through coherence" requires oscillations structured to minimize interference between signals. PLoS computational biology. 8 [PubMed]

Amilhon B et al. (2015). Parvalbumin Interneurons of Hippocampus Tune Population Activity at Theta Frequency. Neuron. 86 [PubMed]

Aradi I, Holmes WR. (1999). Role of multiple calcium and calcium-dependent conductances in regulation of hippocampal dentate granule cell excitability. Journal of computational neuroscience. 6 [PubMed]

Armstrong C, Soltesz I. (2012). Basket cell dichotomy in microcircuit function. The Journal of physiology. 590 [PubMed]

Atherton JF, Bevan MD. (2005). Ionic mechanisms underlying autonomous action potential generation in the somata and dendrites of GABAergic substantia nigra pars reticulata neurons in vitro. The Journal of neuroscience : the official journal of the Society for Neuroscience. 25 [PubMed]

Basu J et al. (2016). Gating of hippocampal activity, plasticity, and memory by entorhinal cortex long-range inhibition. Science (New York, N.Y.). 351 [PubMed]

Beck H et al. (1997). Potassium currents in acutely isolated human hippocampal dentate granule cells. The Journal of physiology. 498 ( Pt 1) [PubMed]

Belluscio MA, Mizuseki K, Schmidt R, Kempter R, Buzsáki G. (2012). Cross-frequency phase-phase coupling between theta and gamma oscillations in the hippocampus. The Journal of neuroscience : the official journal of the Society for Neuroscience. 32 [PubMed]

Bezaire M. (2015). Modeling physiological oscillations in a biologically constrained CA1 network from two perspectives: full-scale parallel network and rationally reduced Network Clamp http://gradworks.umi.com/37/17/3717051.html PhD Thesis UNIVERSITY OF CALIFORNIA, IRVINE, 2015.

Bezaire MJ, Soltesz I. (2013). Quantitative assessment of CA1 local circuits: knowledge base for interneuron-pyramidal cell connectivity. Hippocampus. 23 [PubMed]

Blasco-Ibáñez JM, Freund TF. (1995). Synaptic input of horizontal interneurons in stratum oriens of the hippocampal CA1 subfield: structural basis of feed-back activation. The European journal of neuroscience. 7 [PubMed]

Borg-Graham LJ. (1991). Modeling the nonlinear conductances of excitable membranes Cellular and Molecular Neurobiology: A Practical Approach.

Bragin A et al. (1995). Gamma (40-100 Hz) oscillation in the hippocampus of the behaving rat. The Journal of neuroscience : the official journal of the Society for Neuroscience. 15 [PubMed]

Butler JL, Mendonça PR, Robinson HP, Paulsen O. (2016). Intrinsic Cornu Ammonis Area 1 Theta-Nested Gamma Oscillations Induced by Optogenetic Theta Frequency Stimulation. The Journal of neuroscience : the official journal of the Society for Neuroscience. 36 [PubMed]

Buzsáki G, Anastassiou CA, Koch C. (2012). The origin of extracellular fields and currents--EEG, ECoG, LFP and spikes. Nature reviews. Neuroscience. 13 [PubMed]

Buzsáki G et al. (2003). Hippocampal network patterns of activity in the mouse. Neuroscience. 116 [PubMed]

Buzsáki G, Moser EI. (2013). Memory, navigation and theta rhythm in the hippocampal-entorhinal system. Nature neuroscience. 16 [PubMed]

Campanac E et al. (2013). Enhanced intrinsic excitability in basket cells maintains excitatory-inhibitory balance in hippocampal circuits. Neuron. 77 [PubMed]

Capogna M. (2011). Neurogliaform cells and other interneurons of stratum lacunosum-moleculare gate entorhinal-hippocampal dialogue. The Journal of physiology. 589 [PubMed]

Chen K et al. (2001). Persistently modified h-channels after complex febrile seizures convert the seizure-induced enhancement of inhibition to hyperexcitability. Nature medicine. 7 [PubMed]

Colgin LL. (2013). Mechanisms and functions of theta rhythms. Annual review of neuroscience. 36 [PubMed]

Colgin LL. (2016). Rhythms of the hippocampal network. Nature reviews. Neuroscience. 17 [PubMed]

Colgin LL et al. (2009). Frequency of gamma oscillations routes flow of information in the hippocampus. Nature. 462 [PubMed]

Colgin LL, Moser EI. (2010). Gamma oscillations in the hippocampus. Physiology (Bethesda, Md.). 25 [PubMed]

Cooper DC, Moore SJ, Staff NP, Spruston N. (2003). Psychostimulant-induced plasticity of intrinsic neuronal excitability in ventral subiculum. The Journal of neuroscience : the official journal of the Society for Neuroscience. 23 [PubMed]

Craig MT, McBain CJ. (2014). The emerging role of GABAB receptors as regulators of network dynamics: fast actions from a 'slow' receptor? Current opinion in neurobiology. 26 [PubMed]

Csicsvari J, Hirase H, Czurkó A, Mamiya A, Buzsáki G. (1999). Oscillatory coupling of hippocampal pyramidal cells and interneurons in the behaving Rat. The Journal of neuroscience : the official journal of the Society for Neuroscience. 19 [PubMed]

Cutsuridis V, Cobb S, Graham BP. (2010). Encoding and retrieval in a model of the hippocampal CA1 microcircuit. Hippocampus. 20 [PubMed]

Cutsuridis V, Hasselmo M. (2012). GABAergic contributions to gating, timing, and phase precession of hippocampal neuronal activity during theta oscillations. Hippocampus. 22 [PubMed]

Dannenberg H et al. (2015). Synergy of direct and indirect cholinergic septo-hippocampal pathways coordinates firing in hippocampal networks. The Journal of neuroscience : the official journal of the Society for Neuroscience. 35 [PubMed]

Dyhrfjeld-Johnsen J et al. (2007). Topological determinants of epileptogenesis in large-scale structural and functional models of the dentate gyrus derived from experimental data. Journal of neurophysiology. 97 [PubMed]

Engel AK, Fries P. (2010). Beta-band oscillations--signalling the status quo? Current opinion in neurobiology. 20 [PubMed]

Ferguson KA et al. (2015). Network models provide insights into how oriens-lacunosum-moleculare and bistratified cell interactions influence the power of local hippocampal CA1 theta oscillations. Frontiers in systems neuroscience. 9 [PubMed]

Ferguson KA, Huh CY, Amilhon B, Williams S, Skinner FK. (2013). Experimentally constrained CA1 fast-firing parvalbumin-positive interneuron network models exhibit sharp transitions into coherent high frequency rhythms. Frontiers in computational neuroscience. 7 [PubMed]

Ferraguti F et al. (2005). Metabotropic glutamate receptor 8-expressing nerve terminals target subsets of GABAergic neurons in the hippocampus. The Journal of neuroscience : the official journal of the Society for Neuroscience. 25 [PubMed]

Ficker E, Heinemann U. (1992). Slow and fast transient potassium currents in cultured rat hippocampal cells. The Journal of physiology. 445 [PubMed]

Fries P. (2015). Rhythms for Cognition: Communication through Coherence. Neuron. 88 [PubMed]

Fuentealba P et al. (2008). Ivy cells: a population of nitric-oxide-producing, slow-spiking GABAergic neurons and their involvement in hippocampal network activity. Neuron. 57 [PubMed]

Fuentealba P et al. (2010). Expression of COUP-TFII nuclear receptor in restricted GABAergic neuronal populations in the adult rat hippocampus. The Journal of neuroscience : the official journal of the Society for Neuroscience. 30 [PubMed]

Fuhrmann F et al. (2015). Locomotion, Theta Oscillations, and the Speed-Correlated Firing of Hippocampal Neurons Are Controlled by a Medial Septal Glutamatergic Circuit. Neuron. 86 [PubMed]

Gasparini S, Magee JC. (2006). State-dependent dendritic computation in hippocampal CA1 pyramidal neurons. The Journal of neuroscience : the official journal of the Society for Neuroscience. 26 [PubMed]

Gleeson P, Steuber V, Silver RA. (2007). neuroConstruct: a tool for modeling networks of neurons in 3D space. Neuron. 54 [PubMed]

Goutagny R, Jackson J, Williams S. (2009). Self-generated theta oscillations in the hippocampus. Nature neuroscience. 12 [PubMed]

Gulyás AI, Megías M, Emri Z, Freund TF. (1999). Total number and ratio of excitatory and inhibitory synapses converging onto single interneurons of different types in the CA1 area of the rat hippocampus. The Journal of neuroscience : the official journal of the Society for Neuroscience. 19 [PubMed]

Gulyás AI, Tóth K, Dános P, Freund TF. (1991). Subpopulations of GABAergic neurons containing parvalbumin, calbindin D28k, and cholecystokinin in the rat hippocampus. The Journal of comparative neurology. 312 [PubMed]

Hasselmo ME. (2005). What is the function of hippocampal theta rhythm?--Linking behavioral data to phasic properties of field potential and unit recording data. Hippocampus. 15 [PubMed]

Hasselmo ME, Bodelón C, Wyble BP. (2002). A proposed function for hippocampal theta rhythm: separate phases of encoding and retrieval enhance reversal of prior learning. Neural computation. 14 [PubMed]

Hendrickson PJ, Yu GJ, Song D, Berger TW. (2015). Interactions between Inhibitory Interneurons and Excitatory Associational Circuitry in Determining Spatio-Temporal Dynamics of Hippocampal Dentate Granule Cells: A Large-Scale Computational Study. Frontiers in systems neuroscience. 9 [PubMed]

Hines ML, Carnevale NT. (2006). The NEURON Book.

Hines ML, Eichner H, Schürmann F. (2008). Neuron splitting in compute-bound parallel network simulations enables runtime scaling with twice as many processors. Journal of computational neuroscience. 25 [PubMed]

Hines ML, Markram H, Schürmann F. (2008). Fully implicit parallel simulation of single neurons. Journal of computational neuroscience. 25 [PubMed]

Hongo Y et al. (2015). Topological organization of CA3-to-CA1 excitation. The European journal of neuroscience. 42 [PubMed]

Hu H, Gan J, Jonas P. (2014). Interneurons. Fast-spiking, parvalbumin? GABAergic interneurons: from cellular design to microcircuit function. Science (New York, N.Y.). 345 [PubMed]

Hájos N, Mody I. (1997). Synaptic communication among hippocampal interneurons: properties of spontaneous IPSCs in morphologically identified cells. The Journal of neuroscience : the official journal of the Society for Neuroscience. 17 [PubMed]

Jaffe DB et al. (1994). A model for dendritic Ca2+ accumulation in hippocampal pyramidal neurons based on fluorescence imaging measurements. Journal of neurophysiology. 71 [PubMed]

Jedlicka P, Deller T, Schwarzacher SW. (2010). Computational modeling of GABAA receptor-mediated paired-pulse inhibition in the dentate gyrus. Journal of computational neuroscience. 29 [PubMed]

Jedlicka P et al. (2011). Increased dentate gyrus excitability in neuroligin-2-deficient mice in vivo. Cerebral cortex (New York, N.Y. : 1991). 21 [PubMed]

Jeewajee A et al. (2014). Theta phase precession of grid and place cell firing in open environments. Philosophical transactions of the Royal Society of London. Series B, Biological sciences. 369 [PubMed]

Jensen O, Colgin LL. (2007). Cross-frequency coupling between neuronal oscillations. Trends in cognitive sciences. 11 [PubMed]

Jensen O, Lisman JE. (2000). Position reconstruction from an ensemble of hippocampal place cells: contribution of theta phase coding. Journal of neurophysiology. 83 [PubMed]

Jinno S et al. (2007). Neuronal diversity in GABAergic long-range projections from the hippocampus. The Journal of neuroscience : the official journal of the Society for Neuroscience. 27 [PubMed]

Katona L et al. (2014). Sleep and movement differentiates actions of two types of somatostatin-expressing GABAergic interneuron in rat hippocampus. Neuron. 82 [PubMed]

Kavalali ET. (2015). The mechanisms and functions of spontaneous neurotransmitter release. Nature reviews. Neuroscience. 16 [PubMed]

Kepecs A, Fishell G. (2014). Interneuron cell types are fit to function. Nature. 505 [PubMed]

Kispersky TJ, Fernandez FR, Economo MN, White JA. (2012). Spike resonance properties in hippocampal O-LM cells are dependent on refractory dynamics. The Journal of neuroscience : the official journal of the Society for Neuroscience. 32 [PubMed]

Klausberger T et al. (2003). Brain-state- and cell-type-specific firing of hippocampal interneurons in vivo. Nature. 421 [PubMed]

Klausberger T et al. (2005). Complementary roles of cholecystokinin- and parvalbumin-expressing GABAergic neurons in hippocampal network oscillations. The Journal of neuroscience : the official journal of the Society for Neuroscience. 25 [PubMed]

Klausberger T et al. (2004). Spike timing of dendrite-targeting bistratified cells during hippocampal network oscillations in vivo. Nature neuroscience. 7 [PubMed]

Klausberger T, Somogyi P. (2008). Neuronal diversity and temporal dynamics: the unity of hippocampal circuit operations. Science (New York, N.Y.). 321 [PubMed]

Klee R, Ficker E, Heinemann U. (1995). Comparison of voltage-dependent potassium currents in rat pyramidal neurons acutely isolated from hippocampal regions CA1 and CA3. Journal of neurophysiology. 74 [PubMed]

Kohl MM, Paulsen O. (2010). The roles of GABAB receptors in cortical network activity. Advances in pharmacology (San Diego, Calif.). 58 [PubMed]

Kramis R, Vanderwolf CH, Bland BH. (1975). Two types of hippocampal rhythmical slow activity in both the rabbit and the rat: relations to behavior and effects of atropine, diethyl ether, urethane, and pentobarbital. Experimental neurology. 49 [PubMed]

Krook-Magnuson E, Luu L, Lee SH, Varga C, Soltesz I. (2011). Ivy and neurogliaform interneurons are a major target of µ-opioid receptor modulation. The Journal of neuroscience : the official journal of the Society for Neuroscience. 31 [PubMed]

Lancaster B, Nicoll RA, Perkel DJ. (1991). Calcium activates two types of potassium channels in rat hippocampal neurons in culture. The Journal of neuroscience : the official journal of the Society for Neuroscience. 11 [PubMed]

Lapray D et al. (2012). Behavior-dependent specialization of identified hippocampal interneurons. Nature neuroscience. 15 [PubMed]

Latorre R, Oberhauser A, Labarca P, Alvarez O. (1989). Varieties of calcium-activated potassium channels. Annual review of physiology. 51 [PubMed]

Lee SH, Földy C, Soltesz I. (2010). Distinct endocannabinoid control of GABA release at perisomatic and dendritic synapses in the hippocampus. The Journal of neuroscience : the official journal of the Society for Neuroscience. 30 [PubMed]

Lee SH et al. (2014). Parvalbumin-positive basket cells differentiate among hippocampal pyramidal cells. Neuron. 82 [PubMed]

Lien CC, Jonas P. (2003). Kv3 potassium conductance is necessary and kinetically optimized for high-frequency action potential generation in hippocampal interneurons. The Journal of neuroscience : the official journal of the Society for Neuroscience. 23 [PubMed]

Lisman JE, Idiart MA. (1995). Storage of 7 +/- 2 short-term memories in oscillatory subcycles. Science (New York, N.Y.). 267 [PubMed]

Lisman JE, Jensen O. (2013). The ?-? neural code. Neuron. 77 [PubMed]

Maccaferri G, Quattrocolo G. (2016). Firing pattern of O-LM cells in mouse hippocampal ca1 CRCNS.org.

Maccaferri G, Roberts JD, Szucs P, Cottingham CA, Somogyi P. (2000). Cell surface domain specific postsynaptic currents evoked by identified GABAergic neurones in rat hippocampus in vitro. The Journal of physiology. 524 Pt 1 [PubMed]

Magee JC. (1998). Dendritic hyperpolarization-activated currents modify the integrative properties of hippocampal CA1 pyramidal neurons. The Journal of neuroscience : the official journal of the Society for Neuroscience. 18 [PubMed]

Maier N et al. (2011). Coherent phasic excitation during hippocampal ripples. Neuron. 72 [PubMed]

Manns JR, Zilli EA, Ong KC, Hasselmo ME, Eichenbaum H. (2007). Hippocampal CA1 spiking during encoding and retrieval: relation to theta phase. Neurobiology of learning and memory. 87 [PubMed]

Maris E, Fries P, van Ede F. (2016). Diverse Phase Relations among Neuronal Rhythms and Their Potential Function. Trends in neurosciences. 39 [PubMed]

Markram H et al. (2015). Reconstruction and Simulation of Neocortical Microcircuitry. Cell. 163 [PubMed]

Megías M, Emri Z, Freund TF, Gulyás AI. (2001). Total number and distribution of inhibitory and excitatory synapses on hippocampal CA1 pyramidal cells. Neuroscience. 102 [PubMed]

Mercer A, Eastlake K, Trigg HL, Thomson AM. (2012). Local circuitry involving parvalbumin-positive basket cells in the CA2 region of the hippocampus. Hippocampus. 22 [PubMed]

Metz AE, Jarsky T, Martina M, Spruston N. (2005). R-type calcium channels contribute to afterdepolarization and bursting in hippocampal CA1 pyramidal neurons. The Journal of neuroscience : the official journal of the Society for Neuroscience. 25 [PubMed]

Migliore M, Cannia C, Lytton WW, Markram H, Hines ML. (2006). Parallel network simulations with NEURON. Journal of computational neuroscience. 21 [PubMed]

Migliore M, Cook EP, Jaffe DB, Turner DA, Johnston D. (1995). Computer simulations of morphologically reconstructed CA3 hippocampal neurons. Journal of neurophysiology. 73 [PubMed]

Migliore M, Hoffman DA, Magee JC, Johnston D. (1999). Role of an A-type K+ conductance in the back-propagation of action potentials in the dendrites of hippocampal pyramidal neurons. Journal of computational neuroscience. 7 [PubMed]

Mizuseki K, Sirota A, Pastalkova E, Buzsáki G. (2009). Theta oscillations provide temporal windows for local circuit computation in the entorhinal-hippocampal loop. Neuron. 64 [PubMed]

Moczydlowski E, Latorre R. (1983). Gating kinetics of Ca2+-activated K+ channels from rat muscle incorporated into planar lipid bilayers. Evidence for two voltage-dependent Ca2+ binding reactions. The Journal of general physiology. 82 [PubMed]

Morgan RJ, Soltesz I. (2008). Nonrandom connectivity of the epileptic dentate gyrus predicts a major role for neuronal hubs in seizures. Proceedings of the National Academy of Sciences of the United States of America. 105 [PubMed]

Moser EI, Kropff E, Moser MB. (2008). Place cells, grid cells, and the brain's spatial representation system. Annual review of neuroscience. 31 [PubMed]

Mátyás F, Freund TF, Gulyás AI. (2004). Convergence of excitatory and inhibitory inputs onto CCK-containing basket cells in the CA1 area of the rat hippocampus. The European journal of neuroscience. 19 [PubMed]

Neymotin SA et al. (2011). Ketamine disrupts ? modulation of ? in a computer model of hippocampus. The Journal of neuroscience : the official journal of the Society for Neuroscience. 31 [PubMed]

Neymotin SA, Lee H, Park E, Fenton AA, Lytton WW. (2011). Emergence of physiological oscillation frequencies in a computer model of neocortex. Frontiers in computational neuroscience. 5 [PubMed]

Numann RE, Wadman WJ, Wong RK. (1987). Outward currents of single hippocampal cells obtained from the adult guinea-pig. The Journal of physiology. 393 [PubMed]

Papp OI, Karlócai MR, Tóth IE, Freund TF, Hájos N. (2013). Different input and output properties characterize parvalbumin-positive basket and Axo-axonic cells in the hippocampal CA3 subfield. Hippocampus. 23 [PubMed]

Poolos NP, Migliore M, Johnston D. (2002). Pharmacological upregulation of h-channels reduces the excitability of pyramidal neuron dendrites. Nature neuroscience. 5 [PubMed]

Price CJ et al. (2005). Neurogliaform neurons form a novel inhibitory network in the hippocampal CA1 area. The Journal of neuroscience : the official journal of the Society for Neuroscience. 25 [PubMed]

Quattrocolo G, Maccaferri G. (2013). Novel GABAergic circuits mediating excitation/inhibition of Cajal-Retzius cells in the developing hippocampus. The Journal of neuroscience : the official journal of the Society for Neuroscience. 33 [PubMed]

Ramaswamy S et al. (2015). The neocortical microcircuit collaboration portal: a resource for rat somatosensory cortex. Frontiers in neural circuits. 9 [PubMed]

Remondes M, Schuman EM. (2004). Role for a cortical input to hippocampal area CA1 in the consolidation of a long-term memory. Nature. 431 [PubMed]

Robbe D et al. (2006). Cannabinoids reveal importance of spike timing coordination in hippocampal function. Nature neuroscience. 9 [PubMed]

Rotstein HG et al. (2005). Slow and fast inhibition and an H-current interact to create a theta rhythm in a model of CA1 interneuron network. Journal of neurophysiology. 94 [PubMed]

Sah P. (1996). Ca(2+)-activated K+ currents in neurones: types, physiological roles and modulation. Trends in neurosciences. 19 [PubMed]

Santhakumar V, Aradi I, Soltesz I. (2005). Role of mossy fiber sprouting and mossy cell loss in hyperexcitability: a network model of the dentate gyrus incorporating cell types and axonal topography. Journal of neurophysiology. 93 [PubMed]

Saraga F, Wu CP, Zhang L, Skinner FK. (2003). Active dendrites and spike propagation in multi-compartment models of oriens-lacunosum/moleculare hippocampal interneurons. The Journal of physiology. 552 [PubMed]

Saudargiene A, Cobb S, Graham BP. (2015). A computational study on plasticity during theta cycles at Schaffer collateral synapses on CA1 pyramidal cells in the hippocampus. Hippocampus. 25 [PubMed]

Schneider CJ, Cuntz H, Soltesz I. (2014). Linking macroscopic with microscopic neuroanatomy using synthetic neuronal populations. PLoS computational biology. 10 [PubMed]

Schomburg EW, Anastassiou CA, Buzsáki G, Koch C. (2012). The spiking component of oscillatory extracellular potentials in the rat hippocampus. The Journal of neuroscience : the official journal of the Society for Neuroscience. 32 [PubMed]

Schomburg EW et al. (2014). Theta phase segregation of input-specific gamma patterns in entorhinal-hippocampal networks. Neuron. 84 [PubMed]

Sejnowski TJ, Koch C, Churchland PS. (1988). Computational neuroscience. Science (New York, N.Y.). 241 [PubMed]

Soltesz I, Armstrong C, Raikov I, Bezaire M, Burk K. (2016). SimTracker tool and code template to design, manage and analyze neural network model simulations in parallel NEURON bioRxiv.

Soltesz I, Lee SH, Krook-Magnuson E. (2016). Intracellular, in vitro somatic membrane potential recordings from whole cell patch clamped rodent hippocampal CA1 neurons CRCNS.org.

Soltesz I, Raikov I, Bezaire MJ, Burk K, Vyas D. (2015). Simulation results from full scale and rationally reduced network models of the isolated hippocampal CA1 subfield in rat CRCNS.org.

Tejada J, Roque AC. (2014). Computational models of dentate gyrus with epilepsy-induced morphological alterations in granule cells. Epilepsy & behavior : E&B. 38 [PubMed]

Thomas EA, Reid CA, Berkovic SF, Petrou S. (2009). Prediction by modeling that epilepsy may be caused by very small functional changes in ion channels. Archives of neurology. 66 [PubMed]

Thomas EA, Reid CA, Petrou S. (2010). Mossy fiber sprouting interacts with sodium channel mutations to increase dentate gyrus excitability. Epilepsia. 51 [PubMed]

Tort AB, Komorowski RW, Manns JR, Kopell NJ, Eichenbaum H. (2009). Theta-gamma coupling increases during the learning of item-context associations. Proceedings of the National Academy of Sciences of the United States of America. 106 [PubMed]

Tricoire L et al. (2011). A blueprint for the spatiotemporal origins of mouse hippocampal interneuron diversity. The Journal of neuroscience : the official journal of the Society for Neuroscience. 31 [PubMed]

Tripathy SJ, Savitskaya J, Burton SD, Urban NN, Gerkin RC. (2014). NeuroElectro: a window to the world's neuron electrophysiology data. Frontiers in neuroinformatics. 8 [PubMed]

Varga C, Golshani P, Soltesz I. (2012). Frequency-invariant temporal ordering of interneuronal discharges during hippocampal oscillations in awake mice. Proceedings of the National Academy of Sciences of the United States of America. 109 [PubMed]

Varga C et al. (2014). Functional fission of parvalbumin interneuron classes during fast network events. eLife. 3 [PubMed]

Wheeler DW et al. (2015). Hippocampome.org: a knowledge base of neuron types in the rodent hippocampus. eLife. 4 [PubMed]

Winkels R et al. (2009). Reduced excitability in the dentate gyrus network of betaIV-spectrin mutant mice in vivo. Hippocampus. 19 [PubMed]

Womelsdorf T et al. (2007). Modulation of neuronal interactions through neuronal synchronization. Science (New York, N.Y.). 316 [PubMed]

Ylinen A et al. (1995). Intracellular correlates of hippocampal theta rhythm in identified pyramidal cells, granule cells, and basket cells. Hippocampus. 5 [PubMed]

Yuen GL, Durand D. (1991). Reconstruction of hippocampal granule cell electrophysiology by computer simulation. Neuroscience. 41 [PubMed]

References and models that cite this paper

Bilash OM, Chavlis S, Johnson CD, Poirazi P, Basu J. (2023). Lateral entorhinal cortex inputs modulate hippocampal dendritic excitability by recruiting a local disinhibitory microcircuit. Cell reports. 42 [PubMed]

Cavarretta F et al. (2018). Parallel odor processing by mitral and middle tufted cells in the olfactory bulb. Scientific reports. 8 [PubMed]

Dura-Bernal S et al. (2023). Data-driven multiscale model of macaque auditory thalamocortical circuits reproduces in vivo dynamics. Cell reports. 42 [PubMed]

Gandolfi D et al. (2022). A realistic morpho-anatomical connection strategy for modelling full-scale point-neuron microcircuits Scientific reports. 12 [PubMed]

Giacopelli G, Tegolo D, Spera E, Migliore M. (2021). On the structural connectivity of large-scale models of brain networks at cellular level. Scientific reports. 11 [PubMed]

Schulz JM, Knoflach F, Hernandez MC, Bischofberger J. (2018). Dendrite-targeting interneurons control synaptic NMDA-receptor activation via nonlinear a5-GABAA receptors. Nature communications. 9 [PubMed]

Shuman T et al. (2020). Breakdown of spatial coding and interneuron synchronization in epileptic mice. Nature neuroscience. 23 [PubMed]

Soltesz I, Armstrong C, Raikov I, Bezaire M, Burk K. (2016). SimTracker tool and code template to design, manage and analyze neural network model simulations in parallel NEURON bioRxiv.

Tzilivaki A, Kastellakis G, Poirazi P. (2019). Challenging the point neuron dogma: FS basket cells as 2-stage nonlinear integrators Nature communications. 10 [PubMed]

Soltesz I, Armstrong C, Raikov I, Bezaire M, Burk K. (2016). SimTracker tool and code template to design, manage and analyze neural network model simulations in parallel NEURON bioRxiv.

See more from authors: Soltesz I · Armstrong C · Raikov I · Bezaire M · Burk K

References and models cited by this paper

Armstrong C et al. (2016). Target-selectivity of parvalbumin-positive interneurons in layer II of medial entorhinal cortex in normal and epileptic animals. Hippocampus. 26 [PubMed]

Ascoli GA, De Schutter E, Kennedy DN. (2003). An information science infrastructure for neuroscience. Neuroinformatics. 1 [PubMed]

Beltrame F, Koslow SH. (1999). Neuroinformatics as a megascience issue. IEEE transactions on information technology in biomedicine : a publication of the IEEE Engineering in Medicine and Biology Society. 3 [PubMed]

Bezaire MJ. (). Simtracker - Parallel NEURON Network Model Simulation Management & Analysis Simtooldb, accessed 2016.

Bezaire MJ. (2016). Hippocampal CA1 Network In Parallel NEURON With Spontaneous Theta, Gamma: Full Scale & Network Clamp Modeldb, 2016A.

Bezaire MJ, Raikov I, Burk K, Vyas D, Soltesz I. (2016). Interneuronal mechanisms of hippocampal theta oscillations in a full-scale model of the rodent CA1 circuit. eLife. 5 [PubMed]

Carnevale NT, Hines M. (). Research reports that have used NEURON (accessed Sep 28th, 2015).

Churchland AK, Abbott LF. (2016). Conceptual and technical advances define a key moment for theoretical neuroscience. Nature neuroscience. 19 [PubMed]

Davison A. (2012). Automated capture of experiment context for easier reproducibility in computational research Computing In Science And Engineering. 14

Ferguson AR, Nielson JL, Cragin MH, Bandrowski AE, Martone ME. (2014). Big data from small data: data-sharing in the 'long tail' of neuroscience. Nature neuroscience. 17 [PubMed]

Gleeson P et al. (2010). NeuroML: a language for describing data driven models of neurons and networks with a high degree of biological detail. PLoS computational biology. 6 [PubMed]

Gleeson P, Steuber V, Silver RA. (2007). neuroConstruct: a tool for modeling networks of neurons in 3D space. Neuron. 54 [PubMed]

Hines ML, Carnevale NT. (2006). The NEURON Book.

Hines ML, Carnevale NT. (2008). Translating network models to parallel hardware in NEURON. Journal of neuroscience methods. 169 [PubMed]

Kandel ER, Markram H, Matthews PM, Yuste R, Koch C. (2013). Neuroscience thinks big (and collaboratively). Nature reviews. Neuroscience. 14 [PubMed]

Mattioni M, Cohen U, Le Novère N. (2012). Neuronvisio: A Graphical User Interface with 3D Capabilities for NEURON. Frontiers in neuroinformatics. 6 [PubMed]

McDougal RA, Bulanova AS, Lytton WW. (2016). Reproducibility in Computational Neuroscience Models and Simulations. IEEE transactions on bio-medical engineering. 63 [PubMed]

Merali Z. (2010). Computational science: ...Error. Nature. 467 [PubMed]

Poolos NP, Migliore M, Johnston D. (2002). Pharmacological upregulation of h-channels reduces the excitability of pyramidal neuron dendrites. Nature neuroscience. 5 [PubMed]

Soltesz I, Raikov I, Bezaire MJ, Burk K, Vyas D. (2015). Simulation results from full scale and rationally reduced network models of the isolated hippocampal CA1 subfield in rat CRCNS.org.

Stevens JL, Elver M, Bednar JA. (2013). An automated and reproducible workflow for running and analyzing neural simulations using Lancet and IPython Notebook. Frontiers in neuroinformatics. 7 [PubMed]

Tripathy SJ, Savitskaya J, Burton SD, Urban NN, Gerkin RC. (2014). NeuroElectro: a window to the world's neuron electrophysiology data. Frontiers in neuroinformatics. 8 [PubMed]

References and models that cite this paper

Bezaire MJ, Raikov I, Burk K, Vyas D, Soltesz I. (2016). Interneuronal mechanisms of hippocampal theta oscillations in a full-scale model of the rodent CA1 circuit. eLife. 5 [PubMed]

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