Acker CD, Antic SD. (2009). Quantitative assessment of the distributions of membrane conductances involved in action potential backpropagation along basal dendrites. Journal of neurophysiology. 101 [PubMed]

• Excitability of PFC Basal Dendrites (Acker and Antic 2009) [Model]

Ait Ouares K, Filipis L, Tzilivaki A, Poirazi P, Canepari M. (2019). Two Distinct Sets of Ca2+ and K+ Channels Are Activated at Different Membrane Potentials by the Climbing Fiber Synaptic Potential in Purkinje Neuron Dendrites. The Journal of neuroscience : the official journal of the Society for Neuroscience. 39 [PubMed]

• Cerebellum Purkinje cell: dendritic ion channels activated by climbing fibre (Ait Ouares et al 2019) [Model]

Anwar H et al. (2014). Dendritic diameters affect the spatial variability of intracellular calcium dynamics in computer models. Frontiers in cellular neuroscience. 8 [PubMed]

• Calcium dynamics depend on dendritic diameters (Anwar et al. 2014) [Model]

Ascoli GA, Gasparini S, Medinilla V, Migliore M. (2010). Local control of postinhibitory rebound spiking in CA1 pyramidal neuron dendrites. The Journal of neuroscience : the official journal of the Society for Neuroscience. 30 [PubMed]

• CA1 pyramidal neuron: rebound spiking (Ascoli et al.2010) [Model]

Ashhad S, Narayanan R. (2013). Quantitative interactions between the A-type K+ current and inositol trisphosphate receptors regulate intraneuronal Ca2+ waves and synaptic plasticity. The Journal of physiology. 591 [PubMed]

• Calcium waves and mGluR-dependent synaptic plasticity in CA1 pyr. neurons (Ashhad & Narayanan 2013) [Model]

Basak R, Narayanan R. (2018). Active dendrites regulate the spatiotemporal spread of signaling microdomains. PLoS computational biology. 14 [PubMed]

• Active dendrites shape signaling microdomains in hippocampal neurons (Basak & Narayanan 2018) [Model]

Behabadi BF, Mel BW. (2014). Mechanisms underlying subunit independence in pyramidal neuron dendrites. Proceedings of the National Academy of Sciences of the United States of America. 111 [PubMed]

• Mechanisms underlying subunit independence in pyramidal neuron dendrites (Behabadi and Mel 2014) [Model]

Bilash OM, Chavlis S, Johnson CD, Poirazi P, Basu J. (2023). Lateral entorhinal cortex inputs modulate hippocampal dendritic excitability by recruiting a local disinhibitory microcircuit. Cell reports. 42 [PubMed]

• Hippocampal CA1 microcircuit model including somatic and dendritic inhibition (Bilash et al, 2023) [Model]

Bloss EB et al. (2016). Structured Dendritic Inhibition Supports Branch-Selective Integration in CA1 Pyramidal Cells. Neuron. 89 [PubMed]

• CA1 pyramidal neuron synaptic integration (Bloss et al. 2016) [Model]

Bono J, Clopath C. (2017). Modeling somatic and dendritic spike mediated plasticity at the single neuron and network level. Nature communications. 8 [PubMed]

• Modeling dendritic spikes and plasticity (Bono and Clopath 2017) [Model]

Branco T, Clark BA, Häusser M. (2010). Dendritic discrimination of temporal input sequences in cortical neurons. Science (New York, N.Y.). 329 [PubMed]

• Dendritic Discrimination of Temporal Input Sequences (Branco et al. 2010) [Model]

Branco T, Häusser M. (2011). Synaptic integration gradients in single cortical pyramidal cell dendrites. Neuron. 69 [PubMed]

• Dendritic Discrimination of Temporal Input Sequences (Branco et al. 2010) [Model]

Carvalho TP, Buonomano DV. (2009). Differential effects of excitatory and inhibitory plasticity on synaptically driven neuronal input-output functions. Neuron. 61 [PubMed]

• Balance of excitation and inhibition (Carvalho and Buonomano 2009) [Model]

Coskren PJ et al. (2015). Functional consequences of age-related morphologic changes to pyramidal neurons of the rhesus monkey prefrontal cortex. Journal of computational neuroscience. 38 [PubMed]

• Rhesus Monkey Layer 3 Pyramidal Neurons: Young vs aged PFC (Coskren et al. 2015) [Model]

Cutsuridis V, Poirazi P. (2015). A computational study on how theta modulated inhibition can account for the long temporal windows in the entorhinal-hippocampal loop. Neurobiology of learning and memory. 120 [PubMed]

• Long time windows from theta modulated inhib. in entorhinal–hippo. loop (Cutsuridis & Poirazi 2015) [Model]

Dorman DB, Jędrzejewska-Szmek J, Blackwell KT. (2018). Inhibition enhances spatially-specific calcium encoding of synaptic input patterns in a biologically constrained model. eLife. 7 [PubMed]

• Striatal Spiny Projection Neuron, inhibition enhances spatial specificity (Dorman et al 2018) [Model]

Ferrante M, Migliore M, Ascoli GA. (2013). Functional impact of dendritic branch-point morphology. The Journal of neuroscience : the official journal of the Society for Neuroscience. 33 [PubMed]

• Functional impact of dendritic branch point morphology (Ferrante et al., 2013) [Model]

Gao PP et al. (2021). Local Glutamate-Mediated Dendritic Plateau Potentials Change the State of the Cortical Pyramidal Neuron. Journal of neurophysiology. 125 [PubMed]

• Glutamate mediated dendritic and somatic plateau potentials in cortical L5 pyr cells (Gao et al '20) [Model]

González-Rueda A, Pedrosa V, Feord RC, Clopath C, Paulsen O. (2018). Activity-Dependent Downscaling of Subthreshold Synaptic Inputs during Slow-Wave-Sleep-like Activity In Vivo. Neuron. 97 [PubMed]

• Feedforward network undergoing Up-state-mediated plasticity (Gonzalez-Rueda et al. 2018) [Model]

Graham BP, Saudargiene A, Cobb S. (2014). Spine head calcium as a measure of summed postsynaptic activity for driving synaptic plasticity. Neural computation. 26 [PubMed]

• Spine head calcium in a CA1 pyramidal cell model (Graham et al. 2014) [Model]

Hawkins J, Ahmad S. (2016). Why Neurons Have Thousands of Synapses, a Theory of Sequence Memory in Neocortex. Frontiers in neural circuits. 10 [PubMed]

• Theory of sequence memory in neocortex (Hawkins & Ahmad 2016) [Model]

Hendrickson EB, Edgerton JR, Jaeger D. (2011). The capabilities and limitations of conductance-based compartmental neuron models with reduced branched or unbranched morphologies and active dendrites. Journal of computational neuroscience. 30 [PubMed]

• Comparison of full and reduced globus pallidus models (Hendrickson 2010) [Model]

Kastellakis G, Silva AJ, Poirazi P. (2016). Linking Memories across Time via Neuronal and Dendritic Overlaps in Model Neurons with Active Dendrites. Cell reports. 17 [PubMed]

• Model of memory linking through memory allocation (Kastellakis et al. 2016) [Model]
• Locus Coeruleus blocking model (Chowdhury et al.) [Model]

Katona G et al. (2011). Roller Coaster Scanning reveals spontaneous triggering of dendritic spikes in CA1 interneurons. Proceedings of the National Academy of Sciences of the United States of America. 108 [PubMed]

• CA1 stratum radiatum interneuron multicompartmental model (Katona et al. 2011) [Model]

Katz Y et al. (2009). Synapse distribution suggests a two-stage model of dendritic integration in CA1 pyramidal neurons. Neuron. 63 [PubMed]

• A two-stage model of dendritic integration in CA1 pyramidal neurons (Katz et al. 2009) [Model]

Kim Y, Hsu CL, Cembrowski MS, Mensh BD, Spruston N. (2015). Dendritic sodium spikes are required for long-term potentiation at distal synapses on hippocampal pyramidal neurons. eLife. 4 [PubMed]

• CA1 pyramidal neuron: Dendritic Na+ spikes are required for LTP at distal synapses (Kim et al 2015) [Model]

Legenstein R, Maass W. (2011). Branch-specific plasticity enables self-organization of nonlinear computation in single neurons. The Journal of neuroscience : the official journal of the Society for Neuroscience. 31 [PubMed]

Migliore M, De Blasi I, Tegolo D, Migliore R. (2011). A modeling study suggesting how a reduction in the context-dependent input on CA1 pyramidal neurons could generate schizophrenic behavior. Neural networks : the official journal of the International Neural Network Society. 24 [PubMed]

• CA1 pyramidal neuron: schizophrenic behavior (Migliore et al. 2011) [Model]

Migliore M, Novara G, Tegolo D. (2008). Single neuron binding properties and the magical number 7. Hippocampus. 18 [PubMed]

• CA1 pyramidal neurons: binding properties and the magical number 7 (Migliore et al. 2008) [Model]

Morita K. (2008). Possible role of dendritic compartmentalization in the spatial working memory circuit. The Journal of neuroscience : the official journal of the Society for Neuroscience. 28 [PubMed]

• Working memory circuit with branched dendrites (Morita 2008) [Model]

Morse TM, Carnevale NT, Mutalik PG, Migliore M, Shepherd GM. (2010). Abnormal Excitability of Oblique Dendrites Implicated in Early Alzheimer's: A Computational Study. Frontiers in neural circuits. 4 [PubMed]

• Amyloid beta (IA block) effects on a model CA1 pyramidal cell (Morse et al. 2010) [Model]

Müllner FE, Wierenga CJ, Bonhoeffer T. (2015). Precision of Inhibition: Dendritic Inhibition by Individual GABAergic Synapses on Hippocampal Pyramidal Cells Is Confined in Space and Time. Neuron. 87 [PubMed]

• CA1 pyramidal neuron: dendritic Ca2+ inhibition (Muellner et al. 2015) [Model]

Rabinowitch I, Segev I. (2008). Two opposing plasticity mechanisms pulling a single synapse. Trends in neurosciences. 31 [PubMed]

• Homeostatic synaptic plasticity (Rabinowitch and Segev 2006a,b) [Model]

Sun Q, Srinivas KV, Sotayo A, Siegelbaum SA. (2014). Dendritic Na+ spikes enable cortical input to drive action potential output from hippocampal CA2 pyramidal neurons. eLife. 3 [PubMed]

Tzilivaki A, Kastellakis G, Poirazi P. (2019). Challenging the point neuron dogma: FS basket cells as 2-stage nonlinear integrators Nature communications. 10 [PubMed]

• Fast Spiking Basket cells (Tzilivaki et al 2019) [Model]

Veit J, Hakim R, Jadi MP, Sejnowski TJ, Adesnik H. (2017). Cortical gamma band synchronization through somatostatin interneurons. Nature neuroscience. 20 [PubMed]