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Baccus SA, Sahley CL, Muller KJ. (2001). Multiple sites of action potential initiation increase neuronal firing rate. Journal of neurophysiology. 86 [PubMed]

Bahl A, Stemmler MB, Herz AV, Roth A. (2012). Automated optimization of a reduced layer 5 pyramidal cell model based on experimental data. Journal of neuroscience methods. 210 [PubMed]

• A set of reduced models of layer 5 pyramidal neurons (Bahl et al. 2012) [Model]

Behabadi BF, Mel BW. (2014). Mechanisms underlying subunit independence in pyramidal neuron dendrites. Proceedings of the National Academy of Sciences of the United States of America. 111 [PubMed]

• Mechanisms underlying subunit independence in pyramidal neuron dendrites (Behabadi and Mel 2014) [Model]

Bock T, Negrean A, Siegelbaum SA. (2022). Somatic depolarization enhances hippocampal CA1 dendritic spike propagation and distal input-driven synaptic plasticity The Journal of neuroscience : the official journal of the Society for Neuroscience. 42 [PubMed]

• Depolarization Enhacement of Dendritic Spike Propagation (Bock et al 2022) [Model]

Bono J, Clopath C. (2017). Modeling somatic and dendritic spike mediated plasticity at the single neuron and network level. Nature communications. 8 [PubMed]

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Branco T, Clark BA, Häusser M. (2010). Dendritic discrimination of temporal input sequences in cortical neurons. Science (New York, N.Y.). 329 [PubMed]

• Dendritic Discrimination of Temporal Input Sequences (Branco et al. 2010) [Model]

Branco T, Häusser M. (2011). Synaptic integration gradients in single cortical pyramidal cell dendrites. Neuron. 69 [PubMed]

• Dendritic Discrimination of Temporal Input Sequences (Branco et al. 2010) [Model]

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• Rat LGN Thalamocortical Neuron (Connelly et al 2015, 2016) [Model]

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Elaagouby A, Yuste R. (1999). Role of calcium electrogenesis in apical dendrites: generation of intrinsic oscillations by an axial current. Journal of computational neuroscience. 7 [PubMed]

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• CA1 pyramidal neuron: dendritic spike initiation (Gasparini et al 2004) [Model]

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• Principles governing the operation of synaptic inhibition in dendrites (Gidon & Segev 2012) [Model]

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• Response to correlated synaptic input for HH/IF point neuron vs with dendrite (Górski et al 2018) [Model]

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Hsu CL, Zhao X, Milstein AD, Spruston N. (2018). Persistent sodium current mediates the steep voltage dependence of spatial coding in hippocampal pyramidal neurons Neuron. 99

• CA1 pyramidal neuron: Persistent Na current mediates steep synaptic amplification (Hsu et al 2018) [Model]

Häusser M, Mel B. (2003). Dendrites: bug or feature? Current opinion in neurobiology. 13 [PubMed]

Häusser M, Spruston N, Stuart GJ. (2000). Diversity and dynamics of dendritic signaling. Science (New York, N.Y.). 290 [PubMed]

Kampa BM, Clements J, Jonas P, Stuart GJ. (2004). Kinetics of Mg2+ unblock of NMDA receptors: implications for spike-timing dependent synaptic plasticity. The Journal of physiology. 556 [PubMed]

• Kinetic NMDA receptor model (Kampa et al 2004) [Model]

Kampa BM, Stuart GJ. (2006). Calcium spikes in basal dendrites of layer 5 pyramidal neurons during action potential bursts. The Journal of neuroscience : the official journal of the Society for Neuroscience. 26 [PubMed]

• Calcium spikes in basal dendrites (Kampa and Stuart 2006) [Model]

Keren N, Peled N, Korngreen A. (2005). Constraining compartmental models using multiple voltage recordings and genetic algorithms. Journal of neurophysiology. 94 [PubMed]

Kim Y, Hsu CL, Cembrowski MS, Mensh BD, Spruston N. (2015). Dendritic sodium spikes are required for long-term potentiation at distal synapses on hippocampal pyramidal neurons. eLife. 4 [PubMed]

• CA1 pyramidal neuron: Dendritic Na+ spikes are required for LTP at distal synapses (Kim et al 2015) [Model]

Korngreen A, Sakmann B. (2000). Voltage-gated K+ channels in layer 5 neocortical pyramidal neurones from young rats: subtypes and gradients. The Journal of physiology. 525 Pt 3 [PubMed]

• Pyramidal Neuron Deep: K+ kinetics (Korngreen, Sakmann 2000) [Model]

Körding KP, König P. (2001). Supervised and unsupervised learning with two sites of synaptic integration. Journal of computational neuroscience. 11 [PubMed]

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• Synaptic integration in tuft dendrites of layer 5 pyramidal neurons (Larkum et al. 2009) [Model]

Letzkus JJ, Kampa BM, Stuart GJ. (2006). Learning rules for spike timing-dependent plasticity depend on dendritic synapse location. The Journal of neuroscience : the official journal of the Society for Neuroscience. 26 [PubMed]

• STDP depends on dendritic synapse location (Letzkus et al. 2006) [Model]

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• ELL Medium Ganglion cell (Muller et al 2019) [Model]

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• Layer V pyramidal cell model with reduced morphology (Mäki-Marttunen et al 2018) [Model]

Nevian T, Larkum ME, Polsky A, Schiller J. (2007). Properties of basal dendrites of layer 5 pyramidal neurons: a direct patch-clamp recording study. Nature neuroscience. 10 [PubMed]

• Dendritic Na+ spike initiation and backpropagation of APs in active dendrites (Nevian et al. 2007) [Model]

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• Neuronal computation evoked by extra-large spines (Obi-Nagata et al., 2023) [Model]

Pashut T et al. (2011). Mechanisms of magnetic stimulation of central nervous system neurons. PLoS computational biology. 7 [PubMed]

• Mechanisms of magnetic stimulation of central nervous system neurons (Pashut et al. 2011) [Model]

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• Effects of neural morphology on global and focal NMDA-spikes (Poleg-Polsky 2015) [Model]

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Rhodes PA, Llinás RR. (2001). Apical tuft input efficacy in layer 5 pyramidal cells from rat visual cortex. The Journal of physiology. 536 [PubMed]

Rindner DJ, Proddutur A, Lur G. (2022). Cell-type specific integration of feedforward and feedback synaptic inputs in the posterior parietal cortex Neuron. 110 [PubMed]

• Cell-type specific integration of feedforward and feedback synaptic inputs (Ridner et al, 2022) [Model]

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Schaefer AT et al. (2007). Dendritic voltage-gated K+ conductance gradient in pyramidal neurones of neocortical layer 5B from rats. The Journal of physiology. 579 [PubMed]

• Correcting space clamp in dendrites (Schaefer et al. 2003 and 2007) [Model]

Schaefer AT, Larkum ME, Sakmann B, Roth A. (2003). Coincidence detection in pyramidal neurons is tuned by their dendritic branching pattern. Journal of neurophysiology. 89 [PubMed]

• Pyramidal neuron coincidence detection tuned by dendritic branching pattern (Schaefer et al 2003) [Model]

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• Layer 5 Pyramidal Neuron (Shai et al., 2015) [Model]

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• Intracortical synaptic potential modulation by presynaptic somatic potential (Shu et al. 2006, 2007) [Model]

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Somjen GG, Kager H, Wadman WJ. (2009). Calcium sensitive non-selective cation current promotes seizure-like discharges and spreading depression in a model neuron. Journal of computational neuroscience. 26 [PubMed]

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• Pyramidal Neuron Deep: attenuation in dendrites (Stuart, Spruston 1998) [Model]

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Tsay D, Yuste R. (2002). Role of dendritic spines in action potential backpropagation: a numerical simulation study. Journal of neurophysiology. 88 [PubMed]

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• Global and multiplexed dendritic computations under in vivo-like conditions (Ujfalussy et al 2018) [Model]

Vetter P, Roth A, Häusser M. (2001). Propagation of action potentials in dendrites depends on dendritic morphology. Journal of neurophysiology. 85 [PubMed]

• Dendritica (Vetter et al 2001) [Model]

Williams SR, Stuart GJ. (2000). Action potential backpropagation and somato-dendritic distribution of ion channels in thalamocortical neurons. The Journal of neuroscience : the official journal of the Society for Neuroscience. 20 [PubMed]

• Thalamic Relay Neuron: I-T current (Williams, Stuart 2000) [Model]

Williams SR, Stuart GJ. (2003). Role of dendritic synapse location in the control of action potential output. Trends in neurosciences. 26 [PubMed]

Williams SR, Stuart GJ. (2003). Voltage- and site-dependent control of the somatic impact of dendritic IPSPs. The Journal of neuroscience : the official journal of the Society for Neuroscience. 23 [PubMed]

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• Inhibition of bAPs and Ca2+ spikes in a multi-compartment pyramidal neuron model (Wilmes et al 2016) [Model]

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