Aradi I, Erdi P. (1996). Signal generation and propagation in the olfactory bulb: multicompartmental modeling Computers And Mathematics With Applications. 32

Aradi I, Erdi P. (1996). MULTICOMPARTMENTAL MODELING OF THE OLFACTORY BULB Cybernetics and Systems. 27

Avella Gonzalez OJ, Mansvelder HD, van Pelt J, van Ooyen A. (2015). H-Channels Affect Frequency, Power and Amplitude Fluctuations of Neuronal Network Oscillations. Frontiers in computational neuroscience. 9 [PubMed]

• H-currents effect on the fluctuation of gamma/beta oscillations (Avella-Gonzalez et al., 2015) [Model]

Babadi B. (2005). Bursting as an effective relay mode in a minimal thalamic model. Journal of computational neuroscience. 18 [PubMed]

Bazhenov M et al. (2001). Model of transient oscillatory synchronization in the locust antennal lobe. Neuron. 30 [PubMed]

Bazhenov M, Timofeev I, Steriade M, Sejnowski T. (2000). Spiking-bursting activity in the thalamic reticular nucleus initiates sequences of spindle oscillations in thalamic networks. Journal of neurophysiology. 84 [PubMed]

Bazhenov M, Timofeev I, Steriade M, Sejnowski TJ. (2002). Model of thalamocortical slow-wave sleep oscillations and transitions to activated States. The Journal of neuroscience : the official journal of the Society for Neuroscience. 22 [PubMed]

• Sleep-wake transitions in corticothalamic system (Bazhenov et al 2002) [Model]

Bessaïh T, Leresche N, Lambert RC. (2008). T current potentiation increases the occurrence and temporal fidelity of synaptically evoked burst firing in sensory thalamic neurons. Proceedings of the National Academy of Sciences of the United States of America. 105 [PubMed]

Best J, Park C, Terman D, Wilson C. (2007). Transitions between irregular and rhythmic firing patterns in excitatory-inhibitory neuronal networks. Journal of computational neuroscience. 23 [PubMed]

Cataldi M et al. (2007). Zn(2+) slows down Ca(V)3.3 gating kinetics: implications for thalamocortical activity. Journal of neurophysiology. 98 [PubMed]

Channell P, Fuwape I, Neiman AB, Shilnikov AL. (2009). Variability of bursting patterns in a neuron model in the presence of noise. Journal of computational neuroscience. 27 [PubMed]

• Reduced leech heart interneuron (Channell et al. 2009) [Model]

Chemin J et al. (2002). Specific contribution of human T-type calcium channel isotypes (alpha(1G), alpha(1H) and alpha(1I)) to neuronal excitability. The Journal of physiology. 540 [PubMed]

Chemin J, Monteil A, Perez-Reyes E, Nargeot J, Lory P. (2001). Direct inhibition of T-type calcium channels by the endogenous cannabinoid anandamide. The EMBO journal. 20 [PubMed]

Chen X, Shu S, Kennedy DP, Willcox SC, Bayliss DA. (2009). Subunit-specific effects of isoflurane on neuronal Ih in HCN1 knockout mice. Journal of neurophysiology. 101 [PubMed]

Contreras D, Destexhe A, Steriade M. (1997). Intracellular and computational characterization of the intracortical inhibitory control of synchronized thalamic inputs in vivo. Journal of neurophysiology. 78 [PubMed]

Csernai M et al. (2019). Dynamics of sleep oscillations is coupled to brain temperature on multiple scales. The Journal of physiology. 597 [PubMed]

• Dynamics of sleep oscillations coupled to brain temperature on multiple scales (Csernai et al 2019) [Model]

Debay D, Wolfart J, Le Franc Y, Le Masson G, Bal T. (2004). Exploring spike transfer through the thalamus using hybrid artificial-biological neuronal networks. Journal of physiology, Paris. 98 [PubMed]

Destexhe A. (1997). Conductance-based integrate-and-fire models. Neural computation. 9 [PubMed]

Destexhe A. (1998). Spike-and-wave oscillations based on the properties of GABAB receptors. The Journal of neuroscience : the official journal of the Society for Neuroscience. 18 [PubMed]

Destexhe A. (2000). Modelling corticothalamic feedback and the gating of the thalamus by the cerebral cortex. Journal of physiology, Paris. 94 [PubMed]

Destexhe A, Babloyantz A, Sejnowski TJ. (1993). Ionic mechanisms for intrinsic slow oscillations in thalamic relay neurons. Biophysical journal. 65 [PubMed]

• Thalamocortical Relay cell under current clamp in high-conductance state (Zeldenrust et al 2018) [Model]

Destexhe A, Bal T, McCormick DA, Sejnowski TJ. (1996). Ionic mechanisms underlying synchronized oscillations and propagating waves in a model of ferret thalamic slices. Journal of neurophysiology. 76 [PubMed]

• Thalamocortical and Thalamic Reticular Network (Destexhe et al 1996) [Model]
• Thalamocortical Relay cell under current clamp in high-conductance state (Zeldenrust et al 2018) [Model]

Destexhe A, Contreras D, Sejnowski TJ, Steriade M. (1994). A model of spindle rhythmicity in the isolated thalamic reticular nucleus. Journal of neurophysiology. 72 [PubMed]

• Thalamic Reticular Network (Destexhe et al 1994) [Model]

Destexhe A, Contreras D, Steriade M. (1998). Mechanisms underlying the synchronizing action of corticothalamic feedback through inhibition of thalamic relay cells. Journal of neurophysiology. 79 [PubMed]

• Pyramidal Neuron: Deep, Thalamic Relay and Reticular, Interneuron (Destexhe et al 1998, 2001) [Model]

Destexhe A, Contreras D, Steriade M. (1999). Cortically-induced coherence of a thalamic-generated oscillation. Neuroscience. 92 [PubMed]

Destexhe A, Contreras D, Steriade M, Sejnowski TJ, Huguenard JR. (1996). In vivo, in vitro, and computational analysis of dendritic calcium currents in thalamic reticular neurons. The Journal of neuroscience : the official journal of the Society for Neuroscience. 16 [PubMed]

• Thalamic reticular neurons: the role of Ca currents (Destexhe et al 1996) [Model]

Destexhe A, Mainen ZF, Sejnowski TJ. (1994). Synthesis of models for excitable membranes, synaptic transmission and neuromodulation using a common kinetic formalism. Journal of computational neuroscience. 1 [PubMed]

• Application of a common kinetic formalism for synaptic models (Destexhe et al 1994) [Model]
• Kinetic synaptic models applicable to building networks (Destexhe et al 1998) [Model]

Destexhe A, Sejnowski TJ. (2003). Interactions between membrane conductances underlying thalamocortical slow-wave oscillations. Physiological reviews. 83 [PubMed]

Doiron B, Laing C, Longtin A, Maler L. (2002). Ghostbursting: a novel neuronal burst mechanism. Journal of computational neuroscience. 12 [PubMed]

Erdi P, Aradi I, Gröbler T. (1997). Rhythmogenesis in single cells and population models: olfactory bulb and hippocampus. Bio Systems. 40 [PubMed]

Fröhlich F, Bazhenov M, Timofeev I, Steriade M, Sejnowski TJ. (2006). Slow state transitions of sustained neural oscillations by activity-dependent modulation of intrinsic excitability. The Journal of neuroscience : the official journal of the Society for Neuroscience. 26 [PubMed]

Golomb D, Ahissar E, Kleinfeld D. (2006). Coding of stimulus frequency by latency in thalamic networks through the interplay of GABAB-mediated feedback and stimulus shape. Journal of neurophysiology. 95 [PubMed]

• Coding of stimulus frequency by latency in thalamic networks (Golomb et al 2005) [Model]

Hadipour-Niktarash A. (2006). A computational model of how an interaction between the thalamocortical and thalamic reticular neurons transforms the low-frequency oscillations of the globus pallidus. Journal of computational neuroscience. 20 [PubMed]

• Thalamic transformation of pallidal input (Hadipour-Niktarash 2006) [Model]

Hall S et al. (2015). Unbalanced Peptidergic Inhibition in Superficial Neocortex Underlies Spike and Wave Seizure Activity. The Journal of neuroscience : the official journal of the Society for Neuroscience. 35 [PubMed]

• Unbalanced peptidergic inhibition in superficial cortex underlies seizure activity (Hall et al 2015) [Model]
• Electrodecrements in in vitro model of infantile spasms (Traub et al 2020) [Model]

Halnes G, Augustinaite S, Heggelund P, Einevoll GT, Migliore M. (2011). A multi-compartment model for interneurons in the dorsal lateral geniculate nucleus. PLoS computational biology. 7 [PubMed]

• A multi-compartment model for interneurons in the dLGN (Halnes et al. 2011) [Model]

Harris JJ, Engl E, Attwell D, Jolivet RB. (2019). Energy-efficient information transfer at thalamocortical synapses. PLoS computational biology. 15 [PubMed]

• Energy-efficient information transfer at thalamocortical synapses (Harris et al 2019) [Model]

Houweling AR et al. (2002). Frequency-selective augmenting responses by short-term synaptic depression in cat neocortex. The Journal of physiology. 542 [PubMed]

Hu H, Vervaeke K, Storm JF. (2002). Two forms of electrical resonance at theta frequencies, generated by M-current, h-current and persistent Na+ current in rat hippocampal pyramidal cells. The Journal of physiology. 545 [PubMed]

Huguenard JR, Sohal VS, Huntsman MM. (2000). Reciprocal inhibitory connections produce desynchronizing phase lags during intrathalamic oscillations Neurocomputing. 32

Komarov M et al. (2018). New class of reduced computationally efficient neuronal models for large-scale simulations of brain dynamics. Journal of computational neuroscience. 44 [PubMed]

Kopp-Scheinpflug C et al. (2011). The sound of silence: ionic mechanisms encoding sound termination. Neuron. 71 [PubMed]

• Superior paraolivary nucleus neuron (Kopp-Scheinpflug et al. 2011) [Model]

Krishnan GP et al. (2016). Cellular and neurochemical basis of sleep stages in the thalamocortical network. eLife. 5 [PubMed]

• Thalamocortical sleep model (Fink et. al., 2024, and Krishnan et al., 2016) [Model]

Li G, Henriquez CS, Fröhlich F. (2017). Unified Thalamic Model Generates Multiple Distinct Oscillations with State-dependent Entrainment by Stimulation PLOS Computational Biology. 13(10)

• A unified thalamic model of multiple distinct oscillations (Li, Henriquez and Fröhlich 2017) [Model]

Li YX, Wang YQ, Miura R. (2003). Clustering in small networks of excitatory neurons with heterogeneous coupling strengths. Journal of computational neuroscience. 14 [PubMed]

Lytton WW, Contreras D, Destexhe A, Steriade M. (1997). Dynamic interactions determine partial thalamic quiescence in a computer network model of spike-and-wave seizures. Journal of neurophysiology. 77 [PubMed]

• Thalamic quiescence of spike and wave seizures (Lytton et al 1997) [Model]

Lytton WW, Destexhe A, Sejnowski TJ. (1996). Control of slow oscillations in the thalamocortical neuron: a computer model. Neuroscience. 70 [PubMed]

Malerba P, Krishnan GP, Fellous JM, Bazhenov M. (2016). Hippocampal CA1 Ripples as Inhibitory Transients. PLoS computational biology. 12 [PubMed]

• CA1 pyramidal cells, basket cells, ripples (Malerba et al 2016) [Model]

Mukherjee P, Kaplan E. (1995). Dynamics of neurons in the cat lateral geniculate nucleus: in vivo electrophysiology and computational modeling. Journal of neurophysiology. 74 [PubMed]

Nadim F, Manor Y, Nusbaum MP, Marder E. (1998). Frequency regulation of a slow rhythm by a fast periodic input. The Journal of neuroscience : the official journal of the Society for Neuroscience. 18 [PubMed]

• Regulation of a slow STG rhythm (Nadim et al 1998) [Model]

Pinto DJ, Jones SR, Kaper TJ, Kopell N. (2003). Analysis of State-Dependent Transitions in Frequency and Long-Distance Coordination in a Model Oscillatory Cortical Circuit Journal of computational neuroscience. 15 [PubMed]

Reinker S, Puil E, Miura RM. (2004). Membrane resonance and stochastic resonance modulate firing patterns of thalamocortical neurons. Journal of computational neuroscience. 16 [PubMed]

Rubin J, Terman D, Chow C. (2001). Localized bumps of activity sustained by inhibition in a two-layer thalamic network. Journal of computational neuroscience. 10 [PubMed]

Rulkov NF, Timofeev I, Bazhenov M. (2004). Oscillations in large-scale cortical networks: map-based model. Journal of computational neuroscience. 17 [PubMed]

• Large cortex model with map-based neurons (Rulkov et al 2004) [Model]

Sejnowski TJ, Destexhe A. (2000). Why do we sleep? Brain research. 886 [PubMed]

Sohal VS, Cox CL, Huguenard JR. (1998). Localization of CCK receptors in thalamic reticular neurons: a modeling study. Journal of neurophysiology. 79 [PubMed]

Sohal VS, Huguenard JR. (1998). Long-range connections synchronize rather than spread intrathalamic oscillations: computational modeling and in vitro electrophysiology. Journal of neurophysiology. 80 [PubMed]

Sohal VS, Huntsman MM, Huguenard JR. (2000). Reciprocal inhibitory connections regulate the spatiotemporal properties of intrathalamic oscillations. The Journal of neuroscience : the official journal of the Society for Neuroscience. 20 [PubMed]

Suffczynski P, Kalitzin S, Lopes Da Silva FH. (2004). Dynamics of non-convulsive epileptic phenomena modeled by a bistable neuronal network. Neuroscience. 126 [PubMed]

• Thalamocortical model of spike and wave seizures (Suffczynski et al. 2004) [Model]

Sánchez E, Barro S, Mariño J, Canedo A. (2003). A computational model of cuneothalamic projection neurons. Network (Bristol, England). 14 [PubMed]

Sánchez E, Barro S, Mariño J, Canedo A. (2006). Cortical modulation of dorsal column nuclei: a computational study. Journal of computational neuroscience. 21 [PubMed]

Tiesinga PH, José JV. (2000). Synchronous clusters in a noisy inhibitory neural network. Journal of computational neuroscience. 9 [PubMed]

Wang J, Chen S, Nolan MF, Siegelbaum SA. (2002). Activity-dependent regulation of HCN pacemaker channels by cyclic AMP: signaling through dynamic allosteric coupling. Neuron. 36 [PubMed]

• Activity dependent regulation of pacemaker channels by cAMP (Wang et al 2002) [Model]

Williams SR, Stuart GJ. (2000). Action potential backpropagation and somato-dendritic distribution of ion channels in thalamocortical neurons. The Journal of neuroscience : the official journal of the Society for Neuroscience. 20 [PubMed]

• Thalamic Relay Neuron: I-T current (Williams, Stuart 2000) [Model]

Zhao X, Robinson PA. (2015). Generalized seizures in a neural field model with bursting dynamics. Journal of computational neuroscience. 39 [PubMed]

• Neural-field model of generalized seizures (Zhao et al., 2015) [Model]

Zhu JJ, Lytton WW, Xue JT, Uhlrich DJ. (1999). An intrinsic oscillation in interneurons of the rat lateral geniculate nucleus. Journal of neurophysiology. 81 [PubMed]

• Thalamic interneuron multicompartment model (Zhu et al. 1999) [Model]

Zhu JJ, Uhlrich DJ, Lytton WW. (1999). Properties of a hyperpolarization-activated cation current in interneurons in the rat lateral geniculate nucleus. Neuroscience. 92 [PubMed]

Zhu JJ, Uhlrich DJ, Lytton WW. (1999). Burst firing in identified rat geniculate interneurons. Neuroscience. 91 [PubMed]

• Thalamic interneuron multicompartment model (Zhu et al. 1999) [Model]

Zylbertal A, Yarom Y, Wagner S. (2017). Synchronous Infra-Slow Bursting in the Mouse Accessory Olfactory Bulb Emerge from Interplay between Intrinsic Neuronal Dynamics and Network Connectivity. The Journal of neuroscience : the official journal of the Society for Neuroscience. 37 [PubMed]

• A network of AOB mitral cells that produces infra-slow bursting (Zylbertal et al. 2017) [Model]