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• CA3 Radiatum/Lacunosum-Moleculare interneuron, Ih (Anderson et al. 2011) [Model]

Angelo K, London M, Christensen SR, Häusser M. (2007). Local and global effects of I(h) distribution in dendrites of mammalian neurons. The Journal of neuroscience : the official journal of the Society for Neuroscience. 27 [PubMed]

Ariav G, Polsky A, Schiller J. (2003). Submillisecond precision of the input-output transformation function mediated by fast sodium dendritic spikes in basal dendrites of CA1 pyramidal neurons. The Journal of neuroscience : the official journal of the Society for Neuroscience. 23 [PubMed]

Ascoli GA, Gasparini S, Medinilla V, Migliore M. (2010). Local control of postinhibitory rebound spiking in CA1 pyramidal neuron dendrites. The Journal of neuroscience : the official journal of the Society for Neuroscience. 30 [PubMed]

• CA1 pyramidal neuron: rebound spiking (Ascoli et al.2010) [Model]

Avella Gonzalez OJ, Mansvelder HD, van Pelt J, van Ooyen A. (2015). H-Channels Affect Frequency, Power and Amplitude Fluctuations of Neuronal Network Oscillations. Frontiers in computational neuroscience. 9 [PubMed]

• H-currents effect on the fluctuation of gamma/beta oscillations (Avella-Gonzalez et al., 2015) [Model]

Bal R, Oertel D. (2000). Hyperpolarization-activated, mixed-cation current (I(h)) in octopus cells of the mammalian cochlear nucleus. Journal of neurophysiology. 84 [PubMed]

• CN Octopus Cell: Ih current (Bal, Oertel 2000) [Model]

Basak R, Narayanan R. (2018). Active dendrites regulate the spatiotemporal spread of signaling microdomains. PLoS computational biology. 14 [PubMed]

• Active dendrites shape signaling microdomains in hippocampal neurons (Basak & Narayanan 2018) [Model]

Bezaire MJ, Raikov I, Burk K, Vyas D, Soltesz I. (2016). Interneuronal mechanisms of hippocampal theta oscillations in a full-scale model of the rodent CA1 circuit. eLife. 5 [PubMed]

• Hippocampal CA1 NN with spontaneous theta, gamma: full scale & network clamp (Bezaire et al 2016) [Model]

Bianchi D et al. (2014). Effects of increasing CREB-dependent transcription on the storage and recall processes in a hippocampal CA1 microcircuit. Hippocampus. 24 [PubMed]

• Effects of increasing CREB on storage and recall processes in a CA1 network (Bianchi et al. 2014) [Model]

Bianchi D et al. (2012). On the mechanisms underlying the depolarization block in the spiking dynamics of CA1 pyramidal neurons. Journal of computational neuroscience. 33 [PubMed]

• CA1 pyramidal neuron: depolarization block (Bianchi et al. 2012) [Model]

Bock T, Negrean A, Siegelbaum SA. (2022). Somatic depolarization enhances hippocampal CA1 dendritic spike propagation and distal input-driven synaptic plasticity The Journal of neuroscience : the official journal of the Society for Neuroscience. 42 [PubMed]

• Depolarization Enhacement of Dendritic Spike Propagation (Bock et al 2022) [Model]

Cannon RC, O'Donnell C, Nolan MF. (2010). Stochastic ion channel gating in dendritic neurons: morphology dependence and probabilistic synaptic activation of dendritic spikes. PLoS computational biology. 6 [PubMed]

• Stochastic ion channels and neuronal morphology (Cannon et al. 2010) [Model]

Ceballos CC, Li S, Roque AC, Tzounopoulos T, Leão RM. (2016). Ih Equalizes Membrane Input Resistance in a Heterogeneous Population of Fusiform Neurons in the Dorsal Cochlear Nucleus. Frontiers in cellular neuroscience. 10 [PubMed]

• DCN fusiform cell (Ceballos et al. 2016) [Model]

Chan CS, Shigemoto R, Mercer JN, Surmeier DJ. (2004). HCN2 and HCN1 channels govern the regularity of autonomous pacemaking and synaptic resetting in globus pallidus neurons. The Journal of neuroscience : the official journal of the Society for Neuroscience. 24 [PubMed]

Chen K et al. (2001). Persistently modified h-channels after complex febrile seizures convert the seizure-induced enhancement of inhibition to hyperexcitability. Nature medicine. 7 [PubMed]

• Febrile seizure-induced modifications to Ih (Chen et al 2001) [Model]

Chitwood RA, Hubbard A, Jaffe DB. (1999). Passive electrotonic properties of rat hippocampal CA3 interneurones. The Journal of physiology. 515 ( Pt 3) [PubMed]

Colbert CM, Pan E. (2002). Ion channel properties underlying axonal action potential initiation in pyramidal neurons. Nature neuroscience. 5 [PubMed]

Combe CL, Canavier CC, Gasparini S. (2018). Intrinsic Mechanisms of Frequency Selectivity in the Proximal Dendrites of CA1 Pyramidal Neurons. The Journal of neuroscience : the official journal of the Society for Neuroscience. 38 [PubMed]

• CA1 pyramidal neuron (Combe et al 2018) [Model]

Cook EP, Johnston D. (1999). Voltage-dependent properties of dendrites that eliminate location-dependent variability of synaptic input. Journal of neurophysiology. 81 [PubMed]

Das A, Narayanan R. (2015). Active dendrites mediate stratified gamma-range coincidence detection in hippocampal model neurons. The Journal of physiology. 593 [PubMed]

Day M et al. (2005). Dendritic excitability of mouse frontal cortex pyramidal neurons is shaped by the interaction among HCN, Kir2, and Kleak channels. The Journal of neuroscience : the official journal of the Society for Neuroscience. 25 [PubMed]

Deitcher Y et al. (2017). Comprehensive Morpho-Electrotonic Analysis Shows 2 Distinct Classes of L2 and L3 Pyramidal Neurons in Human Temporal Cortex. Cerebral cortex (New York, N.Y. : 1991). 27 [PubMed]

• 2 Distinct Classes of L2 and L3 Pyramidal Neurons in Human Temporal Cortex (Deitcher et al 2017) [Model]

Desjardins AE, Li YX, Reinker S, Miura RM, Neuman RS. (2003). The influences of Ih on temporal summation in hippocampal CA1 pyramidal neurons: a modeling study. Journal of computational neuroscience. 15 [PubMed]

Dewell RB, Gabbiani F. (2018). Biophysics of object segmentation in a collision-detecting neuron. eLife. 7 [PubMed]

• LGMD with 3D morphology and active dendrites (Dewell & Gabbiani 2018) [Model]

Dudman JT, Nolan MF. (2009). Stochastically gating ion channels enable patterned spike firing through activity-dependent modulation of spike probability. PLoS computational biology. 5 [PubMed]

Elinder F, Männikkö R, Pandey S, Larsson HP. (2006). Mode shifts in the voltage gating of the mouse and human HCN2 and HCN4 channels. The Journal of physiology. 575 [PubMed]

• Hysteresis in voltage gating of HCN channels (Elinder et al 2006, Mannikko et al 2005) [Model]

Eyal G et al. (2016). Unique membrane properties and enhanced signal processing in human neocortical neurons. eLife. 5 [PubMed]

• Human L2/3 pyramidal cells with low Cm values (Eyal et al. 2016) [Model]

Fernández de Sevilla D, Fuenzalida M, Porto Pazos AB, Buño W. (2007). Selective shunting of the NMDA EPSP component by the slow afterhyperpolarization in rat CA1 pyramidal neurons. Journal of neurophysiology. 97 [PubMed]

Ferrante M, Ascoli GA. (2015). Distinct and synergistic feedforward inhibition of pyramidal cells by basket and bistratified interneurons. Frontiers in cellular neuroscience. 9 [PubMed]

• Feedforward inhibition in pyramidal cells (Ferrante & Ascoli 2015) [Model]

Ferrante M, Migliore M, Ascoli GA. (2013). Functional impact of dendritic branch-point morphology. The Journal of neuroscience : the official journal of the Society for Neuroscience. 33 [PubMed]

• Functional impact of dendritic branch point morphology (Ferrante et al., 2013) [Model]

Gabbiani F, Krapp HG. (2006). Spike-frequency adaptation and intrinsic properties of an identified, looming-sensitive neuron. Journal of neurophysiology. 96 [PubMed]

• Leaky integrate-and-fire model of spike frequency adaptation in the LGMD (Gabbiani and Krapp 2006) [Model]

Gasparini S, Migliore M, Magee JC. (2004). On the initiation and propagation of dendritic spikes in CA1 pyramidal neurons. The Journal of neuroscience : the official journal of the Society for Neuroscience. 24 [PubMed]

• CA1 pyramidal neuron: dendritic spike initiation (Gasparini et al 2004) [Model]

Gidon A, Segev I. (2012). Principles governing the operation of synaptic inhibition in dendrites. Neuron. 75 [PubMed]

• Principles governing the operation of synaptic inhibition in dendrites (Gidon & Segev 2012) [Model]

Gold C, Henze DA, Koch C, Buzsáki G. (2006). On the origin of the extracellular action potential waveform: A modeling study. Journal of neurophysiology. 95 [PubMed]

• Extracellular Action Potential Simulations (Gold et al 2007) [Model]

Golding NL, Mickus TJ, Katz Y, Kath WL, Spruston N. (2005). Factors mediating powerful voltage attenuation along CA1 pyramidal neuron dendrites. The Journal of physiology. 568 [PubMed]

• Voltage attenuation in CA1 pyramidal neuron dendrites (Golding et al 2005) [Model]

Golomb D, Yue C, Yaari Y. (2006). Contribution of persistent Na+ current and M-type K+ current to somatic bursting in CA1 pyramidal cells: combined experimental and modeling study. Journal of neurophysiology. 96 [PubMed]

• CA1 pyramidal cell: I_NaP and I_M contributions to somatic bursting (Golomb et al 2006) [Model]

Groen MR et al. (2014). Development of dendritic tonic GABAergic inhibition regulates excitability and plasticity in CA1 pyramidal neurons. Journal of neurophysiology. 112 [PubMed]

Gulledge AT, Carnevale NT, Stuart GJ. (2012). Electrical advantages of dendritic spines. PloS one. 7 [PubMed]

Hajós M, Hoffmann WE, Orbán G, Kiss T, Erdi P. (2004). Modulation of septo-hippocampal Theta activity by GABAA receptors: an experimental and computational approach. Neuroscience. 126 [PubMed]

• Modulation of septo-hippocampal theta activity by GABAA receptors (Hajos et al. 2004) [Model]

Hanson JE, Smith Y, Jaeger D. (2004). Sodium channels and dendritic spike initiation at excitatory synapses in globus pallidus neurons. The Journal of neuroscience : the official journal of the Society for Neuroscience. 24 [PubMed]

Hardie JB, Pearce RA. (2006). Active and passive membrane properties and intrinsic kinetics shape synaptic inhibition in hippocampal CA1 pyramidal neurons. The Journal of neuroscience : the official journal of the Society for Neuroscience. 26 [PubMed]

Hemond P, Migliore M, Ascoli GA, Jaffe DB. (2009). The membrane response of hippocampal CA3b pyramidal neurons near rest: Heterogeneity of passive properties and the contribution of hyperpolarization-activated currents. Neuroscience. 160 [PubMed]

• Ca3 pyramidal neuron: membrane response near rest (Hemond et al. 2009) [Model]

Hines ML, Carnevale NT. (2001). NEURON: a tool for neuroscientists. The Neuroscientist : a review journal bringing neurobiology, neurology and psychiatry. 7 [PubMed]

• Spatial gridding and temporal accuracy in NEURON (Hines and Carnevale 2001) [Model]

Holmes WR, Ambros-Ingerson J, Grover LM. (2006). Fitting experimental data to models that use morphological data from public databases. Journal of computational neuroscience. 20 [PubMed]

Holmes WR, Grover LM. (2006). Quantifying the magnitude of changes in synaptic level parameters with long-term potentiation. Journal of neurophysiology. 96 [PubMed]

Hu H, Vervaeke K, Storm JF. (2002). Two forms of electrical resonance at theta frequencies, generated by M-current, h-current and persistent Na+ current in rat hippocampal pyramidal cells. The Journal of physiology. 545 [PubMed]

Huys QJ, Ahrens MB, Paninski L. (2006). Efficient estimation of detailed single-neuron models. Journal of neurophysiology. 96 [PubMed]

• Efficient estimation of detailed single-neuron models (Huys et al. 2006) [Model]

Häusser M, Spruston N, Stuart GJ. (2000). Diversity and dynamics of dendritic signaling. Science (New York, N.Y.). 290 [PubMed]

Inoue M, Hashimoto Y, Kudo Y, Miyakawa H. (2001). Dendritic attenuation of synaptic potentials in the CA1 region of rat hippocampal slices detected with an optical method. The European journal of neuroscience. 13 [PubMed]

Jaffe DB, Carnevale NT. (1999). Passive normalization of synaptic integration influenced by dendritic architecture. Journal of neurophysiology. 82 [PubMed]

Kalmbach BE et al. (2018). h-Channels Contribute to Divergent Intrinsic Membrane Properties of Supragranular Pyramidal Neurons in Human versus Mouse Cerebral Cortex. Neuron. 100 [PubMed]

Koizumi A, Jakobs TC, Masland RH. (2004). Inward rectifying currents stabilize the membrane potential in dendrites of mouse amacrine cells: patch-clamp recordings and single-cell RT-PCR. Molecular vision. 10 [PubMed]

Kole MH, Hallermann S, Stuart GJ. (2006). Single Ih channels in pyramidal neuron dendrites: properties, distribution, and impact on action potential output. The Journal of neuroscience : the official journal of the Society for Neuroscience. 26 [PubMed]

• Stochastic Ih and Na-channels in pyramidal neuron dendrites (Kole et al 2006) [Model]

Lawrence JJ et al. (2006). Somatodendritic Kv7/KCNQ/M channels control interspike interval in hippocampal interneurons. The Journal of neuroscience : the official journal of the Society for Neuroscience. 26 [PubMed]

• O-LM interneuron model (Lawrence et al. 2006) [Model]

Lazarewicz MT, Migliore M, Ascoli GA. (2002). A new bursting model of CA3 pyramidal cell physiology suggests multiple locations for spike initiation. Bio Systems. 67 [PubMed]

• CA3 pyramidal neuron (Lazarewicz et al 2002) [Model]

London M, Meunier C, Segev I. (1999). Signal transfer in passive dendrites with nonuniform membrane conductance. The Journal of neuroscience : the official journal of the Society for Neuroscience. 19 [PubMed]

Magee JC, Cook EP. (2000). Somatic EPSP amplitude is independent of synapse location in hippocampal pyramidal neurons. Nature neuroscience. 3 [PubMed]

• CA1 pyramidal neuron: Synaptic Scaling (Magee, Cook 2000) [Model]

Marcelin B et al. (2009). h channel-dependent deficit of theta oscillation resonance and phase shift in temporal lobe epilepsy. Neurobiology of disease. 33 [PubMed]

• CA1 pyramidal neuron: h channel-dependent deficit of theta oscill. resonance (Marcelin et al. 2008) [Model]

Migliore M. (2003). On the integration of subthreshold inputs from Perforant Path and Schaffer Collaterals in hippocampal CA1 pyramidal neurons. Journal of computational neuroscience. 14 [PubMed]

• CA1 pyramidal neuron: integration of subthreshold inputs from PP and SC (Migliore 2003) [Model]

Migliore M, Ferrante M, Ascoli GA. (2005). Signal propagation in oblique dendrites of CA1 pyramidal cells. Journal of neurophysiology. 94 [PubMed]

• CA1 pyramidal neuron: signal propagation in oblique dendrites (Migliore et al 2005) [Model]

Migliore M, Hoffman DA, Magee JC, Johnston D. (1999). Role of an A-type K+ conductance in the back-propagation of action potentials in the dendrites of hippocampal pyramidal neurons. Journal of computational neuroscience. 7 [PubMed]

• CA1 pyramidal neuron (Migliore et al 1999) [Model]

Migliore M, Messineo L, Ferrante M. (2004). Dendritic Ih selectively blocks temporal summation of unsynchronized distal inputs in CA1 pyramidal neurons. Journal of computational neuroscience. 16 [PubMed]

• CA1 pyramidal neuron: effects of Ih on distal inputs (Migliore et al 2004) [Model]

Migliore M, Shepherd GM. (2002). Emerging rules for the distributions of active dendritic conductances. Nature reviews. Neuroscience. 3 [PubMed]

• Modulation of temporal integration window (Migliore, Shepherd 2002) [Model]

Mukunda CL, Narayanan R. (2017). Degeneracy in the regulation of short-term plasticity and synaptic filtering by presynaptic mechanisms. The Journal of physiology. 595 [PubMed]

• Conductance based model for short term plasticity at CA3-CA1 synapses (Mukunda & Narayanan 2017) [Model]

Narayanan R, Johnston D. (2007). Long-term potentiation in rat hippocampal neurons is accompanied by spatially widespread changes in intrinsic oscillatory dynamics and excitability. Neuron. 56 [PubMed]

• Resonance properties through Chirp stimulus responses (Narayanan Johnston 2007, 2008) [Model]
• Chirp stimulus responses in a morphologically realistic model (Narayanan and Johnston, 2007) [Model]

Narayanan R, Johnston D. (2008). The h channel mediates location dependence and plasticity of intrinsic phase response in rat hippocampal neurons. The Journal of neuroscience : the official journal of the Society for Neuroscience. 28 [PubMed]

• Resonance properties through Chirp stimulus responses (Narayanan Johnston 2007, 2008) [Model]

Ness TV, Remme MW, Einevoll GT. (2016). Active subthreshold dendritic conductances shape the local field potential. The Journal of physiology. 594 [PubMed]

Poirazi P, Brannon T, Mel BW. (2003). Online Supplement: About the Model Neuron. 37 Online

• CA1 pyramidal neuron: as a 2-layer NN and subthreshold synaptic summation (Poirazi et al 2003) [Model]

Polsky A, Mel B, Schiller J. (2009). Encoding and decoding bursts by NMDA spikes in basal dendrites of layer 5 pyramidal neurons. The Journal of neuroscience : the official journal of the Society for Neuroscience. 29 [PubMed]

• NMDA spikes in basal dendrites of L5 pyramidal neurons (Polsky et al. 2009) [Model]

Poolos NP, Migliore M, Johnston D. (2002). Pharmacological upregulation of h-channels reduces the excitability of pyramidal neuron dendrites. Nature neuroscience. 5 [PubMed]

• CA1 pyramidal neuron: effects of Lamotrigine on dendritic excitability (Poolos et al 2002) [Model]

Rhodes PA, Llinás RR. (2001). Apical tuft input efficacy in layer 5 pyramidal cells from rat visual cortex. The Journal of physiology. 536 [PubMed]

Saraga F, Wu CP, Zhang L, Skinner FK. (2003). Active dendrites and spike propagation in multi-compartment models of oriens-lacunosum/moleculare hippocampal interneurons. The Journal of physiology. 552 [PubMed]

• Active dendrites and spike propagation in a hippocampal interneuron (Saraga et al 2003) [Model]

Segev I, London M. (2000). Untangling dendrites with quantitative models. Science (New York, N.Y.). 290 [PubMed]

Sekulić V, Chen TC, Lawrence JJ, Skinner FK. (2015). Dendritic distributions of I h channels in experimentally-derived multi-compartment models of oriens-lacunosum/moleculare (O-LM) hippocampal interneurons. Frontiers in synaptic neuroscience. 7 [PubMed]

• Multi-comp. CA1 O-LM interneuron model with varying dendritic Ih distributions (Sekulic et al 2015) [Model]

Sinha M, Narayanan R. (2015). HCN channels enhance spike phase coherence and regulate the phase of spikes and LFPs in the theta-frequency range. Proceedings of the National Academy of Sciences of the United States of America. 112 [PubMed]

• Subthreshold conductances regulate theta-frequency LFPs and spike phase (Sinha and Narayanan, 2015) [Model]

Stadler K et al. (2014). Elevation in type I interferons inhibits HCN1 and slows cortical neuronal oscillations. Cerebral cortex (New York, N.Y. : 1991). 24 [PubMed]

• Firing neocortical layer V pyramidal neuron (Reetz et al. 2014; Stadler et al. 2014) [Model]

Steephen JE, Manchanda R. (2009). Differences in biophysical properties of nucleus accumbens medium spiny neurons emerging from inactivation of inward rectifying potassium currents. Journal of computational neuroscience. 27 [PubMed]

• Effects of KIR current inactivation in NAc Medium Spiny Neurons (Steephen and Manchanda 2009) [Model]

Sun Q, Srinivas KV, Sotayo A, Siegelbaum SA. (2014). Dendritic Na+ spikes enable cortical input to drive action potential output from hippocampal CA2 pyramidal neurons. eLife. 3 [PubMed]

Trevelyan AJ, Jack J. (2002). Detailed passive cable models of layer 2/3 pyramidal cells in rat visual cortex at different temperatures. The Journal of physiology. 539 [PubMed]

Upchurch CM et al. (2022). Long-Term Inactivation of Sodium Channels as a Mechanism of Adaptation in CA1 Pyramidal Cells The Journal of neuroscience : the official journal of the Society for Neuroscience. 42 [PubMed]

• Long-Term Inactivation of Na+ Channels as a Mech of Adaptation in CA1 Pyr Cells (Upchurch et al '22) [Model]

Williams AH, O'Donnell C, Sejnowski TJ, O'Leary T. (2016). Dendritic trafficking faces physiologically critical speed-precision tradeoffs. eLife. 5 [PubMed]

Williams SR, Stuart GJ. (2003). Role of dendritic synapse location in the control of action potential output. Trends in neurosciences. 26 [PubMed]

Williams SR, Stuart GJ. (2003). Voltage- and site-dependent control of the somatic impact of dendritic IPSPs. The Journal of neuroscience : the official journal of the Society for Neuroscience. 23 [PubMed]

Winters BD, Jin SX, Ledford KR, Golding NL. (2017). Amplitude Normalization of Dendritic EPSPs at the Soma of Binaural Coincidence Detector Neurons of the Medial Superior Olive. The Journal of neuroscience : the official journal of the Society for Neuroscience. 37 [PubMed]

Zang Y, Marder E. (2023). Neuronal morphology enhances robustness to perturbations of channel densities Proceedings of the National Academy of Sciences of the United States of America. 120 [PubMed]

• LP neuron model database (Zang and Marder 2023) [Model]

Zeldenrust F, Chameau PJ, Wadman WJ. (2013). Reliability of spike and burst firing in thalamocortical relay cells. Journal of computational neuroscience. 35 [PubMed]

• Reliability of Morris-Lecar neurons with added T, h, and AHP currents (Zeldenrust et al. 2013) [Model]

van Welie I, Remme MW, van Hooft JA, Wadman WJ. (2006). Different levels of Ih determine distinct temporal integration in bursting and regular-spiking neurons in rat subiculum. The Journal of physiology. 576 [PubMed]

• Ih levels roles in bursting and regular-spiking subiculum pyramidal neurons (van Welie et al 2006) [Model]