Model Type: Molecular Network

  1. A generic MAPK cascade model for random parameter sampling analysis (Mai and Liu 2013)
  2. A kinetic model of dopamine- and calcium-dependent striatal synaptic plasticity (Nakano et al. 2010)
  3. A model of cerebellar LTD including RKIP inactivation of Raf and MEK (Hepburn et al 2017)
  4. A systems model of Parkinson’s disease using biochemical systems theory (Sasidharakurup et al. 2017)
  5. Activator protein 1(AP-1) transcriptional regulatory model in brainstem neurons (Makadia et al 2015)
  6. Aplysia LTF model (Liu et al, 2020; Zhang et al, 2021; Liu et al 2022)
  7. Biochemical Systems Theory Model of SARS-CoV-2 infection network (Sasidharakurup et al., 2021)
  8. Biochemical Systems Theory Model of TNFa related pathways (Sasidharakurup and Diwakar 2020)
  9. Boolean network-based analysis of the apoptosis network (Mai and Liu 2009)
  10. Ca(2+) oscillations based on Ca-induced Ca-release (Dupont et al 1991)
  11. Ca+/HCN channel-dependent persistent activity in multiscale model of neocortex (Neymotin et al 2016)
  12. CA1 pyramidal cell receptor dependent cAMP dynamics (Chay et al. 2016)
  13. Ca2+ requirements for Long-Term Depression in Purkinje Cells (Criseida Zamora et al 2018)
  14. Cell signaling/ion channel variability effects on neuronal response (Anderson, Makadia, et al. 2015)
  15. Circadian clock model based on protein sequestration (simple version) (Kim & Forger 2012)
  16. Circadian clock model in mammals (detailed version) (Kim & Forger 2012)
  17. Circadian clock model in mammals (PK/PD model) (Kim & Forger 2013)
  18. Compartmental differences in cAMP signaling pathways in hippocam. CA1 pyr. cells (Luczak et al 2017)
  19. Dopamine activation of signaling pathways in a medium spiny projection neuron (Oliveira et al. 2012)
  20. Dynamics of ERK signaling pathways during L-LTP induction(Miningou et al 2021)
  21. Emergent properties of networks of biological signaling pathways (Bhalla, Iyengar 1999)
  22. Facilitation model based on bound Ca2+ (Matveev et al. 2006)
  23. Facilitation through buffer saturation (Matveev et al. 2004)
  24. Gq coupled signaling pathways involved in striatal synaptic plasticity (Kim et al. 2013)
  25. Interactions among kinase cascades underlying LTP in Aplysia sensory neurons (Zhang et al 2021)
  26. Long term potentiation, LTP, protein synthesis, proteasome (Smolen et al. 2018)
  27. Microglial cytokine network (Anderson et al., 2015)
  28. Model of cerebellar parallel fiber-Purkinje cell LTD and LTP (Gallimore et al 2018)
  29. Model of DARPP-32 phosphorylation in striatal medium spiny neurons (Lindskog et al. 2006)
  30. Multiscale interactions between chemical and electric signaling in LTP (Bhalla 2011)
  31. Multitarget pharmacology for Dystonia in M1 (Neymotin et al 2016)
  32. New and corrected simulations of synaptic facilitation (Matveev et al. 2002)
  33. PKMZ synthesis and AMPAR regulation in late long-term synaptic potentiation (Helfer & Shultz 2018)
  34. Reaction-diffusion in the NEURON simulator (McDougal et al 2013)
  35. Roles of essential kinases in induction of late hippocampal LTP (Smolen et al., 2006)
  36. Signaling pathways In D1R containing striatal spiny projection neurons (Blackwell et al 2018)
  37. Stochastic model of the olfactory cilium transduction and adaptation (Antunes et al 2014)
  38. Striatal D1R medium spiny neuron, including a subcellular DA cascade (Lindroos et al 2018)
  39. Transmitter release and Ca diffusion models (Yamada and Zucker 1992)
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