Model Concept: Temporal Pattern Generation

The model is used to investigate the mechanisms and/or effects of temporal pattern generators.

  1. 3D model of the olfactory bulb (Migliore et al. 2014)
  2. A cardiac cell simulator (Puglisi and Bers 2001), applied to the QT interval (Busjahn et al 2004)
  3. A model of the temporal pattern generator of C. elegans egg-laying behavior (Zhang et. al 2010)
  4. A multiscale approach to analyze circadian rhythms (Vasalou & Henson, 2010) (CellML)
  5. A multiscale approach to analyze circadian rhythms (Vasalou & Henson, 2010) (SBML)
  6. A single column thalamocortical network model (Traub et al 2005)
  7. A spiking model of cortical broadcast and competition (Shanahan 2008)
  8. A spiking neural network model of the Lateral Geniculate Nucleus (Sen-Bhattacharya et al 2017)
  9. Activity dependent conductances in a neuron model (Liu et al. 1998)
  10. Auditory nerve model for predicting performance limits (Heinz et al 2001)
  11. Auditory nerve model with linear tuning (Heinz et al 2001)
  12. Auditory nerve response model (Tan, Carney 2003)
  13. Auditory nerve response model (Zhang et al 2001)
  14. Axonal NaV1.6 Sodium Channels in AP Initiation of CA1 Pyramidal Neurons (Royeck et al. 2008)
  15. Broadening of activity with flow across neural structures (Lytton et al. 2008)
  16. CA3 pyramidal neuron (Safiulina et al. 2010)
  17. CN bushy, stellate neurons (Rothman, Manis 2003)
  18. CN bushy, stellate neurons (Rothman, Manis 2003) (Brian 2)
  19. CN bushy, stellate neurons (Rothman, Manis 2003) (Brian)
  20. CN pyramidal fusiform cell (Kanold, Manis 2001)
  21. Cold-Temperature Coding with Bursting and Spiking Based on TRP Channel Dynamics in Drosophila Larva Sensory Neurons (Maksymchuk, N., A. Sakurai, D.N. Cox, and G.S. Cymbalyuk, 2023)
  22. Collection of simulated data from a thalamocortical network model (Glabska, Chintaluri, Wojcik 2017)
  23. Computational aspects of feedback in neural circuits (Maass et al 2006)
  24. Computational Model of a Central Pattern Generator (Cataldo et al 2006)
  25. Computational model of the distributed representation of operant reward memory (Costa et al. 2020)
  26. Current Dipole in Laminar Neocortex (Lee et al. 2013)
  27. Determinants of the intracellular and extracellular waveforms in DA neurons (Lopez-Jury et al 2018)
  28. Different roles for inhibition in the rhythm-generating respiratory network (Harris et al 2017)
  29. Dynamical model of olfactory bulb mitral cell (Rubin, Cleland 2006)
  30. Emergent properties of networks of biological signaling pathways (Bhalla, Iyengar 1999)
  31. Encoding and discrimination of vowel-like sounds (Tan and Carney 2005)
  32. Encoding and retrieval in a model of the hippocampal CA1 microcircuit (Cutsuridis et al. 2009)
  33. Excitation-contraction coupling/mitochondrial energetics (ECME) model (Cortassa et al. 2006)
  34. Fast global oscillations in networks of I&F neurons with low firing rates (Brunel and Hakim 1999)
  35. Feedforward heteroassociative network with HH dynamics (Lytton 1998)
  36. Formation of synfire chains (Jun and Jin 2007)
  37. Gap-junction coupled network activity depends on coupled dendrites diameter (Gansert et al. 2007)
  38. Gating of steering signals through phasic modulation of reticulospinal neurons (Kozlov et al. 2014)
  39. Generating coherent patterns of activity from chaotic neural networks (Sussillo and Abbott 2009)
  40. Global structure, robustness, and modulation of neuronal models (Goldman et al. 2001)
  41. Hippocampus temporo-septal engram shift model (Lytton 1999)
  42. Hodgkin-Huxley simplifed 2D and 3D models (Lundstrom et al. 2009)
  43. Hopfield and Brody model (Hopfield, Brody 2000)
  44. Hopfield and Brody model (Hopfield, Brody 2000) (NEURON+python)
  45. Information-processing in lamina-specific cortical microcircuits (Haeusler and Maass 2006)
  46. Interaction of leak and IMI conductance on the STG over broad temperature range (Stadele et al 2015)
  47. Ionic basis of alternans and Timothy Syndrome (Fox et al. 2002), (Zhu and Clancy 2007)
  48. Irregular oscillations produced by cyclic recurrent inhibition (Friesen, Friesen 1994)
  49. Large scale model of the olfactory bulb (Yu et al., 2013)
  50. Lateral dendrodenditic inhibition in the Olfactory Bulb (David et al. 2008)
  51. Leech Heart (HE) Motor Neuron conductances contributions to NN activity (Lamb & Calabrese 2013)
  52. Long time windows from theta modulated inhib. in entorhinal–hippo. loop (Cutsuridis & Poirazi 2015)
  53. Loss of phase-locking in non-weakly coupled inhib. networks of type-I neurons (Oh and Matveev 2009)
  54. Model of calcium oscillations in olfactory cilia (Reidl et al. 2006)
  55. Model of generalized periodic discharges in acute hepatic encephalopathy (Song et al 2019)
  56. Model of repetitive firing in Grueneberg ganglion olfactory neurons (Liu et al., 2012)
  57. Motion Clouds: Synthesis of random textures for motion perception (Leon et al. 2012)
  58. Multiple modes of inner hair cell stimulation (Mountain, Cody 1999)
  59. Multistability of clustered states in a globally inhibitory network (Chandrasekaran et al. 2009)
  60. MyFirstNEURON (Houweling, Sejnowski 1997)
  61. Network bursts in cultured NN result from different adaptive mechanisms (Masquelier & Deco 2013)
  62. Neural mass model of the neocortex under sleep regulation (Costa et al 2016)
  63. Neural model of frog ventilatory rhythmogenesis (Horcholle-Bossavit and Quenet 2009)
  64. Neural modeling of an internal clock (Yamazaki and Tanaka 2008)
  65. Neural transformations on spike timing information (Tripp and Eliasmith 2007)
  66. Neuromechanical Model of Rat Hindlimb Walking with Two-Layer CPGs (Deng et al, 2019)
  67. Neuronal population models of intracerebral EEG (Wendling et al. 2005)
  68. Online learning model of olfactory bulb external plexiform layer network (Imam & Cleland 2020)
  69. Oscillations, phase-of-firing coding and STDP: an efficient learning scheme (Masquelier et al. 2009)
  70. Pacemaker neurons and respiratory rhythm generation (Purvis et al 2007)
  71. Paired turbulence and light effect on calcium increase in Hermissenda (Blackwell 2004)
  72. Parallel odor processing by mitral and middle tufted cells in the OB (Cavarretta et al 2016, 2018)
  73. Phase oscillator models for lamprey central pattern generators (Varkonyi et al. 2008)
  74. Polychronization: Computation With Spikes (Izhikevich 2005)
  75. Population models of temporal differentiation (Tripp and Eliasmith 2010)
  76. Quantitative model of sleep-wake dynamics (Phillips & Robinson 2007)
  77. Regulation of a slow STG rhythm (Nadim et al 1998)
  78. Regulation of firing frequency in a midbrain dopaminergic neuron model (Kuznetsova et al. 2010)
  79. Relative spike time coding and STDP-based orientation selectivity in V1 (Masquelier 2012)
  80. Respiratory central pattern generator network in mammalian brainstem (Rubin et al. 2009)
  81. Robust and tunable bursting requires slow positive feedback (Franci et al 2018)
  82. Robust Reservoir Generation by Correlation-Based Learning (Yamazaki & Tanaka 2008)
  83. Role of the AIS in the control of spontaneous frequency of dopaminergic neurons (Meza et al 2017)
  84. Scaling self-organizing maps to model large cortical networks (Bednar et al 2004)
  85. Simulation system of spinal cord motor nuclei and assoc. nerves and muscles (Cisi and Kohn 2008)
  86. Sleep deprivation in the ascending arousal system (Phillips & Robinson 2008)
  87. Slow wave propagation in the guinea-pig gastric antrum (Hirst et al. 2006, Edwards and Hirst 2006)
  88. Spontaneous firing caused by stochastic channel gating (Chow, White 1996)
  89. State-dependent rhythmogenesis in a half-center locomotor CPG (Ausborn et al 2017)
  90. STD-dependent and independent encoding of Input irregularity as spike rate (Luthman et al. 2011)
  91. Striatal GABAergic microcircuit, dopamine-modulated cell assemblies (Humphries et al. 2009)
  92. Sympathetic Preganglionic Neurone (Briant et al. 2014)
  93. Synaptic strengths are critical in creating the proper output phasing in a CPG (Gunay et al 2019)
  94. Synchronized oscillations of clock gene expression in the choroid plexus (Myung et al 2018)
  95. Systems-level modeling of neuronal circuits for leech swimming (Zheng et al. 2007)
  96. Temporal decorrelation by intrinsic cellular dynamics (Wang et al 2003)
  97. Thalamic network model of deep brain stimulation in essential tremor (Birdno et al. 2012)
  98. Thalamic quiescence of spike and wave seizures (Lytton et al 1997)
  99. Thalamic Reticular Network (Destexhe et al 1994)
  100. The activity phase of postsynaptic neurons (Bose et al 2004)
  101. TRPM8-dependent dynamic response in cold thermoreceptors (Olivares et al. 2015)
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