Model Type: Axon

  1. A detailed Purkinje cell model (Masoli et al 2015)
  2. A model of the T-junction of a C-fiber sensory neuron (Sundt et al. 2015)
  3. Action Potential initiation and backpropagation in Neocortical L5 Pyramidal Neuron (Hu et al. 2009)
  4. Activity-dependent broadening of axonal spikes by inactivating K channels (Zheng & Kamiya 2023)
  5. AIS model of L5 cortical pyramidal neuron (Filipis et al., 2023)
  6. AP back-prop. explains threshold variability and rapid rise (McCormick et al. 2007, Yu et al. 2008)
  7. AP initiation, propagation, and cortical invasion in a Layer 5 pyramidal cell (Anderson et 2018)
  8. Axon growth model (Diehl et al. 2016)
  9. Axonal HH-model for temperature stimulation (Fribance et al 2016)
  10. Axonal spheroids and conduction defects in Alzheimer’s disease (Yuan, Zhang, Tong, et al 2022)
  11. Axonal subthreshold voltage signaling along hippocampal mossy fiber (Kamiya 2022)
  12. Biologically Constrained Basal Ganglia model (BCBG model) (Lienard, Girard 2014)
  13. Biophysically realistic neuron models for simulation of cortical stimulation (Aberra et al. 2018)
  14. CA1 pyramidal cell: reconstructed axonal arbor and failures at weak gap junctions (Vladimirov 2011)
  15. CA1 pyramidal neuron: functional significance of axonal Kv7 channels (Shah et al. 2008)
  16. CA1 pyramidal neuron: Persistent Na current mediates steep synaptic amplification (Hsu et al 2018)
  17. Cerebellum granule cell FHF (Dover et al. 2016)
  18. Compartmental models of growing neurites (Graham and van Ooyen 2004)
  19. Comprehensive models of human cortical pyramidal neurons (Eyal et al 2018)
  20. Conduction in uniform myelinated axons (Moore et al 1978)
  21. Continuous time stochastic model for neurite branching (van Elburg 2011)
  22. Continuum model of tubulin-driven neurite elongation (Graham et al 2006)
  23. Contribution of the axon initial segment to APs recorded extracellularly (Telenczuk et al 2018)
  24. Cooling reverses pathological spontaneous firing caused by mild traumatic injury (Barlow et al 2018)
  25. Cortical Basal Ganglia Network Model during Closed-loop DBS (Fleming et al 2020)
  26. Current flow during PAP in squid axon at diameter change (Joyner et al 1980)
  27. Demyelinated and remyelinating axon conductances (Hines, Shrager 1991)
  28. Dentate granule cell: mAHP & sAHP; SK & Kv7/M channels (Mateos-Aparicio et al., 2014)
  29. Diameter, Myelination and Na/K pump interactions affect axonal resilience to high frequency spiking
  30. Dipolar extracellular potentials generated by axonal projections (McColgan et al 2017)
  31. Direct recruitment of S1 pyramidal cells and interneurons via ICMS (Overstreet et al., 2013)
  32. Dorsal Column Fiber Stimulation model (Gilbert et al. 2022)
  33. Double cable myelinated axon (Layer 5 pyramidal neuron; Cohen et al 2020)
  34. Earthworm medial giant fiber conduction velocity across electrical synapses (Heller, Crisp 2016)
  35. Effect of trp-like current on APs during exposure to sinusoidal voltage (Chen et al. 2010)
  36. ELL Medium Ganglion cell (Muller et al 2019)
  37. Ephaptic interactions in olfactory nerve (Bokil et al 2001)
  38. Evaluation of passive component of propagating AP in mossy fiber axons (Ohura & Kamiya 2018)
  39. Explaining pathological changes in axonal excitability by dynamical analysis (Coggan et al. 2011)
  40. Extracellular stimulation of myelinated axon (Reilly 2016)
  41. Globus pallidus neuron models with differing dendritic Na channel expression (Edgerton et al., 2010)
  42. GPi/GPe neuron models (Johnson and McIntyre 2008)
  43. Heterogeneous axon model (Zang et al, accepted)
  44. High frequency oscillations induced in three gap-junction coupled neurons (Tseng et al. 2008)
  45. Human somatosensory and motor axon pair to compare thresholds (Gaines et al 2018)
  46. Human tactile FA1 neurons (Hay and Pruszynski 2020)
  47. Hypocretin and Locus Coeruleus model neurons (Carter et al 2012)
  48. Impact on backpropagation of the spatial heterogeneity of sodium channel kinetics in the axon initial segment (Barlow et al., in press)
  49. Intracortical synaptic potential modulation by presynaptic somatic potential (Shu et al. 2006, 2007)
  50. L5 pyramidal neuron myelination increases analog-digital facilitation extent (Zbili & Debanne 2020)
  51. Leech S Cell: Modulation of Excitability by Serotonin (Burrell and Crisp 2008)
  52. Lillie Transition: onset of saltatory conduction in myelinating axons (Young et al. 2013)
  53. LP neuron model database (Zang and Marder 2023)
  54. Mechanisms of very fast oscillations in axon networks coupled by gap junctions (Munro, Borgers 2010)
  55. Model of peripheral nerve with ephaptic coupling (Capllonch-Juan & Sepulveda 2020)
  56. Model of the Xenopus tadpole swimming spinal network (Roberts et al. 2014)
  57. Morphological determinants of action potential dynamics in substantia nigra (Moubarak et al 2022)
  58. Multiscale model of olfactory receptor neuron in mouse (Dougherty 2009)
  59. Myelinated axon conduction velocity (Brill et al 1977)
  60. Neocort. pyramidal cells subthreshold somatic voltage controls spike propagation (Munro Kopell 2012)
  61. Neural recruitment during synchronous multichannel microstimulation (Hokanson et al 2018)
  62. Neurite: electrophysiological-mechanical coupling simulation framework (Garcia-Grajales et al 2015)
  63. NeuroGPU example on L5_TTPC1_cADpyr232_1 (Ben-Shalom 2022)(Ramaswamy et al., 2015)
  64. Nodes of Ranvier with left-shifted Nav channels (Boucher et al. 2012)
  65. Optical stimulation of a channelrhodopsin-2 positive pyramidal neuron model (Foutz et al 2012)
  66. Parametric computation and persistent gamma in a cortical model (Chambers et al. 2012)
  67. Peripheral nerve:Morris-Lecar implementation of (Schwarz et al 1995)
  68. Prediction for the presence of voltage-gated Ca2+ channels in myelinated central axons (Brown 2003)
  69. Preserving axosomatic spiking features despite diverse dendritic morphology (Hay et al., 2013)
  70. Principles of Computational Modelling in Neuroscience (Book) (Sterratt et al. 2011)
  71. PyPNS: Multiscale Simulation of a Peripheral Nerve in Python (Lubba et al 2018)
  72. Realistic amplifier model (Oláh et al. 2021)
  73. Response properties of neocort. neurons to temporally modulated noisy inputs (Koendgen et al. 2008)
  74. Role of afferent-hair cell connectivity in determining spike train regularity (Holmes et al 2017)
  75. ROOTS: An Algorithm to Generate Biologically Realistic Cortical Axons (Bingham et al 2020)
  76. Selective control of cortical axonal spikes by a slowly inactivating K+ current (Shu et al. 2007)
  77. Sharpness of spike initiation in neurons explained by compartmentalization (Brette 2013)
  78. Sound-evoked activity in peripheral axons of type I spiral ganglion neurons (Budak et al. 2021)
  79. Spike propagation and bouton activation in terminal arborizations (Luscher, Shiner 1990)
  80. Spike trains in Hodgkin–Huxley model and ISIs of acupuncture manipulations (Wang et al. 2008)
  81. Spikelet generation and AP initiation in a L5 neocortical pyr neuron (Michalikova et al. 2017) Fig 1
  82. Spikelet generation and AP initiation in a simplified pyr neuron (Michalikova et al. 2017) Fig 3
  83. Spinal Motor Neuron (McIntyre et al 2002)
  84. Squid axon (Hodgkin, Huxley 1952) (LabAXON)
  85. Squid axon (Hodgkin, Huxley 1952) (NEURON)
  86. Squid axon (Hodgkin, Huxley 1952) (SBML, XPP, other)
  87. Squid axon (Hodgkin, Huxley 1952) (SNNAP)
  88. Squid axon (Hodgkin, Huxley 1952) used in (Chen et al 2010) (R language)
  89. Squid axon: Bifurcation analysis of mode-locking (Lee & Kim 2006) (Gangal & Dar 2014)
  90. State dependent drug binding to sodium channels in the dentate gyrus (Thomas & Petrou 2013)
  91. Stimulated and physiologically induced APs: frequency and fiber diameter (Sadashivaiah et al 2018)
  92. Stoney vs Histed: Quantifying spatial effects of intracortical microstims (Kumaravelu et al 2022)
  93. Strategy for kinase transport by microtubules to nerve terminals (Koon et al. 2014)
  94. Striatal D1R medium spiny neuron, including a subcellular DA cascade (Lindroos et al 2018)
  95. Striatal NN model of MSNs and FSIs investigated effects of dopamine depletion (Damodaran et al 2015)
  96. Submyelin Potassium accumulation in Subthalamic neuron (STN) axons (Bellinger et al. 2008)
  97. Synaptic gating at axonal branches, and sharp-wave ripples with replay (Vladimirov et al. 2013)
  98. Temperature sensitive axon models (DeMaegd & Stein 2020)
  99. Temperature-Sensitive conduction at axon branch points (Westerfield et al 1978)
  100. Thalamic network model of deep brain stimulation in essential tremor (Birdno et al. 2012)
  101. The basis of sharp spike onset in standard biophysical models (Telenczuk et al 2017)
  102. Two Models for synaptic input statistics for the MSO neuron model (Jercog et al. 2010)
  103. Vertical system (VS) fly cells with biophysics (Dan et al 2018)
  104. Vertical System (VS) tangential cells network model (Trousdale et al. 2014)
  105. Xenopus Myelinated Neuron (Frankenhaeuser, Huxley 1964)
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