Hines ML, Carnevale NT. (2001). NEURON: a tool for neuroscientists. The Neuroscientist : a review journal bringing neurobiology, neurology and psychiatry. 7 [PubMed]

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References and models cited by this paper

Ahmed B, Anderson JC, Douglas RJ, Martin KA, Whitteridge D. (1998). Estimates of the net excitatory currents evoked by visual stimulation of identified neurons in cat visual cortex. Cerebral cortex (New York, N.Y. : 1991). 8 [PubMed]

Anderson JC, Binzegger T, Kahana O, Martin KA, Segev I. (1999). Dendritic asymmetry cannot account for directional responses of neurons in visual cortex. Nature neuroscience. 2 [PubMed]

Baccus SA. (1998). Synaptic facilitation by reflected action potentials: enhancement of transmission when nerve impulses reverse direction at axon branch points. Proceedings of the National Academy of Sciences of the United States of America. 95 [PubMed]

Bernander O, Douglas RJ, Martin KA, Koch C. (1991). Synaptic background activity influences spatiotemporal integration in single pyramidal cells. Proceedings of the National Academy of Sciences of the United States of America. 88 [PubMed]

Bernasconi C, Schindler K, Stoop R, Douglas R. (1999). Complex response to periodic inhibition in simple and detailed neuronal models. Neural computation. 11 [PubMed]

Buonomano DV. (2000). Decoding temporal information: A model based on short-term synaptic plasticity. The Journal of neuroscience : the official journal of the Society for Neuroscience. 20 [PubMed]

Bush P, Priebe N. (1998). GABAergic inhibitory control of the transient and sustained components of orientation selectivity in a model microcolumn in layer 4 of cat visual cortex. Neural computation. 10 [PubMed]

Bush PC, Prince DA, Miller KD. (1999). Increased pyramidal excitability and NMDA conductance can explain posttraumatic epileptogenesis without disinhibition: a model. Journal of neurophysiology. 82 [PubMed]

Cameron DA, Vafai H, White JA. (1999). Analysis of dendritic arbors of native and regenerated ganglion cells in the goldfish retina. Visual neuroscience. 16 [PubMed]

Canavier CC. (1999). Sodium dynamics underlying burst firing and putative mechanisms for the regulation of the firing pattern in midbrain dopamine neurons: a computational approach. Journal of computational neuroscience. 6 [PubMed]

Cannon RC, Wheal HV, Turner DA. (1999). Dendrites of classes of hippocampal neurons differ in structural complexity and branching patterns. The Journal of comparative neurology. 413 [PubMed]

Carnevale NT, Claiborne BJ, Brown TH, OBoyle MP. (1996). A newgraphical approach for visualizing the relationship between anatomical and electrotonic structure Computational neuroscience: trends in research.

Carnevale NT, Hines M. (1995). Computer modeling methods for neurons The Handbook Of Brain Theory And Neural Networks.

Carnevale NT, Tsai KY, Claiborne BJ, Brown TH. (1997). Comparative electrotonic analysis of three classes of rat hippocampal neurons. Journal of neurophysiology. 78 [PubMed]

Cash S, Yuste R. (1998). Input summation by cultured pyramidal neurons is linear and position-independent. The Journal of neuroscience : the official journal of the Society for Neuroscience. 18 [PubMed]

Chen JC, Chesler M. (1992). Modulation of extracellular pH by glutamate and GABA in rat hippocampal slices. Journal of neurophysiology. 67 [PubMed]

Chitwood RA, Hubbard A, Jaffe DB. (1999). Passive electrotonic properties of rat hippocampal CA3 interneurones. The Journal of physiology. 515 ( Pt 3) [PubMed]

Cohen S, Hindmarsh A. (1994). Cvode user guide Tech Rep.

Cook EP, Johnston D. (1999). Voltage-dependent properties of dendrites that eliminate location-dependent variability of synaptic input. Journal of neurophysiology. 81 [PubMed]

Crank J. (1975). The Mathematics of Diffusion (2nd edn).

Destexhe A. (1997). Conductance-based integrate-and-fire models. Neural computation. 9 [PubMed]

Destexhe A. (1998). Spike-and-wave oscillations based on the properties of GABAB receptors. The Journal of neuroscience : the official journal of the Society for Neuroscience. 18 [PubMed]

Destexhe A. (1999). Can GABAA conductances explain the fast oscillation frequency of absence seizures in rodents? The European journal of neuroscience. 11 [PubMed]

Destexhe A, Contreras D, Steriade M. (1999). Cortically-induced coherence of a thalamic-generated oscillation. Neuroscience. 92 [PubMed]

Destexhe A, Neubig M. (1999). Low threshold calcium T-current IV curve geometry is alterable through the distribution of T-channels in thalamic relay neurons Neurocomputing. 26-27

Destexhe A, Neubig M, Ulrich D, Huguenard J. (1998). Dendritic low-threshold calcium currents in thalamic relay cells. The Journal of neuroscience : the official journal of the Society for Neuroscience. 18 [PubMed]

Destexhe A, Paré D. (1999). Impact of network activity on the integrative properties of neocortical pyramidal neurons in vivo. Journal of neurophysiology. 81 [PubMed]

Destexhe A, Sejnowski T, Mainen Z. (1995). Fast Kinetic Models for Simulating AMPA, NMDA, GABAA and GABAB Receptors The Neurobiology of Computation.

Dzubay JA, Jahr CE. (1999). The concentration of synaptically released glutamate outside of the climbing fiber-Purkinje cell synaptic cleft. The Journal of neuroscience : the official journal of the Society for Neuroscience. 19 [PubMed]

Elaagouby A, Yuste R. (1999). Role of calcium electrogenesis in apical dendrites: generation of intrinsic oscillations by an axial current. Journal of computational neuroscience. 7 [PubMed]

Engel J, Schultens HA, Schild D. (1999). Small conductance potassium channels cause an activity-dependent spike frequency adaptation and make the transfer function of neurons logarithmic. Biophysical journal. 76 [PubMed]

Feng J, Brown D, Feerick S. (1999). Variability of firing of Hodgkin-Huxley and FitzHugh-Nagumo neurons with stochastic synaptic input. Physical Review Letters. 82

Greenberg RJ, Velte TJ, Humayun MS, Scarlatis GN, de Juan E. (1999). A computational model of electrical stimulation of the retinal ganglion cell. IEEE transactions on bio-medical engineering. 46 [PubMed]

Hillman DE. (1979). Neuronal shape parameters and substructures as a basis of neuronal form. The Neurosciences (4th Study Program).

Hines M. (1984). Efficient computation of branched nerve equations. International journal of bio-medical computing. 15 [PubMed]

Hines M. (1989). A program for simulation of nerve equations with branching geometries. International journal of bio-medical computing. 24 [PubMed]

Hines M. (1993). NEURON--a program for simulation of nerve equations. Neural Systems: Analysis And Modeling.

Hines ML. (1998). The neurosimulator NEURON Methods in neuronal modeling: from synapses to networks.

Hines ML, Carnevale NT. (1997). The NEURON simulation environment. Neural computation. 9 [PubMed]

Hines ML, Carnevale NT. (2000). Expanding NEURON's repertoire of mechanisms with NMODL. Neural computation. 12 [PubMed]

Hines ML, Carnevale NT, Tsai KY. (1996). The Electrotonic Workbench Society For Neuroscience Abstracts. 22

Häusser M, Clark BA. (1997). Tonic synaptic inhibition modulates neuronal output pattern and spatiotemporal synaptic integration. Neuron. 19 [PubMed]

Jackson ME, Cauller LJ. (1997). Evaluation of simplified compartmental models of reconstructed neocortical neurons for use in large-scale simulations of biological neural networks. Brain research bulletin. 44 [PubMed]

Jaeger JC, Carslaw HS. (1959). Conduction of Heat in Solids (2nd ed).

Jaffe DB, Carnevale NT. (1999). Passive normalization of synaptic integration influenced by dendritic architecture. Journal of neurophysiology. 82 [PubMed]

Kits KS, de Vlieger TA, Kooi BW, Mansvelder HD. (1999). Diffusion barriers limit the effect of mobile calcium buffers on exocytosis of large dense cored vesicles. Biophysical journal. 76 [PubMed]

Kleinfeld D, Kristan WB, Wessel R. (1999). Dendritic Ca(2+)-activated K(+) conductances regulate electrical signal propagation in an invertebrate neuron. J Neurosci. 19

Kleppe IC, Robinson HP. (1999). Determining the activation time course of synaptic AMPA receptors from openings of colocalized NMDA receptors. Biophysical journal. 77 [PubMed]

Korogod SM, Gueritaud JP, Launey T, Ivanov AI. (1999). Electrical properties and morphology of motoneurons developing in dissociated unpurified co-culture of embryonic rat brainstem, spinal cord and hindlimb tissues Neurophysiology. 30

Korogod SM, Kulagina IB. (1998). Geometry-induced features of current transfer in neuronal dendrites with tonically activated conductances. Biological cybernetics. 79 [PubMed]

Kulagina IB. (1999). Transfer properties of branching dendrites with tonically activated inputs Neurophysiology. 30

Larkum ME, Launey T, Dityatev A, Lüscher HR. (1998). Integration of excitatory postsynaptic potentials in dendrites of motoneurons of rat spinal cord slice cultures. Journal of neurophysiology. 80 [PubMed]

London M, Meunier C, Segev I. (1999). Signal transfer in passive dendrites with nonuniform membrane conductance. The Journal of neuroscience : the official journal of the Society for Neuroscience. 19 [PubMed]

Lytton WW. (1996). Optimizing synaptic conductance calculation for network simulations. Neural computation. 8 [PubMed]

Lytton WW, Hellman KM, Sutula TP. (1998). Computer models of hippocampal circuit changes of the kindling model of epilepsy. Artificial intelligence in medicine. 13 [PubMed]

Lytton WW, Lipton P. (1999). Can the hippocampus tell time? The temporo-septal engram shift model. Neuroreport. 10 [PubMed]

Lüscher HR, Larkum ME. (1998). Modeling action potential initiation and back-propagation in dendrites of cultured rat motoneurons. Journal of neurophysiology. 80 [PubMed]

Maccabee PJ et al. (1998). Influence of pulse sequence, polarity and amplitude on magnetic stimulation of human and porcine peripheral nerve. The Journal of physiology. 513 ( Pt 2) [PubMed]

Magee JC. (1998). Dendritic hyperpolarization-activated currents modify the integrative properties of hippocampal CA1 pyramidal neurons. The Journal of neuroscience : the official journal of the Society for Neuroscience. 18 [PubMed]

Mainen ZF, Sejnowski TJ. (1996). Influence of dendritic structure on firing pattern in model neocortical neurons. Nature. 382 [PubMed]

Mel BW, Ruderman DL, Archie KA. (1998). Translation-invariant orientation tuning in visual "complex" cells could derive from intradendritic computations. The Journal of neuroscience : the official journal of the Society for Neuroscience. 18 [PubMed]

Migliore M, Culotta M. (1998). Energy efficient modulation of dendritic processing functions. Bio Systems. 48 [PubMed]

Migliore M, Hoffman DA, Magee JC, Johnston D. (1999). Role of an A-type K+ conductance in the back-propagation of action potentials in the dendrites of hippocampal pyramidal neurons. Journal of computational neuroscience. 7 [PubMed]

Moortgat KT, Bullock TH, Sejnowski TJ. (2000). Gap junction effects on precision and frequency of a model pacemaker network. Journal of neurophysiology. 83 [PubMed]

Mukherjee P, Kaplan E. (1998). The maintained discharge of neurons in the cat lateral geniculate nucleus: spectral analysis and computational modeling. Visual neuroscience. 15 [PubMed]

Muller YL, Reitstetter R, Yool AJ. (1998). Regulation of Ca2+-dependent K+ channel expression in rat cerebellum during postnatal development. The Journal of neuroscience : the official journal of the Society for Neuroscience. 18 [PubMed]

Nadim F, Manor Y, Nusbaum MP, Marder E. (1998). Frequency regulation of a slow rhythm by a fast periodic input. The Journal of neuroscience : the official journal of the Society for Neuroscience. 18 [PubMed]

Neville KR, Lytton WW. (1999). Potentiation of Ca2+ influx through NMDA channels by action potentials: a computer model. Neuroreport. 10 [PubMed]

Paré D, Lang EJ, Destexhe A. (1998). Inhibitory control of somatodendritic interactions underlying action potentials in neocortical pyramidal neurons in vivo: an intracellular and computational study. Neuroscience. 84 [PubMed]

Paré D, Shink E, Gaudreau H, Destexhe A, Lang EJ. (1998). Impact of spontaneous synaptic activity on the resting properties of cat neocortical pyramidal neurons In vivo. Journal of neurophysiology. 79 [PubMed]

RALL W. (1959). Branching dendritic trees and motoneuron membrane resistivity. Experimental neurology. 1 [PubMed]

Raastad M, Enríquez-Denton M, Kiehn O. (1998). Synaptic signaling in an active central network only moderately changes passive membrane properties. Proceedings of the National Academy of Sciences of the United States of America. 95 [PubMed]

Rall W. (1977). Core conductor theory and cable properties of neurons Handbook of Physiology. The Nervous System. Cellular Biology of Neurons. 1(1.1)

Sahin M, Durand DM. (1998). Improved nerve cuff electrode recordings with subthreshold anodic currents. IEEE transactions on bio-medical engineering. 45 [PubMed]

Segev I, Burke RE, Fleshman JW. (1998). Compartmental models of complex neurons Methods in Neuronal Modeling.

Sejnowski TJ, Destexhe A, Contreras D, Steriade M, Huguenard J. (1996). Computational models constrained by voltage-clamp data for investigating dendritic currents Computational Neuroscience.

Sejnowski TJ, Destexhe A, Mainen ZF. (1995). Synaptic currents, neuromodulation and kinetic models The Handbook Of Brain Theory And Neural Networks.

Sejnowski TJ, Destexhe A, Mainen ZF. (1998). Kinetic models of synaptic transmission Methods In Neuronal Modeling.

Sejnowski TJ, Mainen ZF. (1998). Chapter 5 Modeling Active Dendritic Processes in Pyramidal Cells Methods in Neuronal Modeling: From Ions to Networks.

Sejnowski TJ, Steriade M, Timofeev I, Houweling AR, Bazhenov M. (1999). Cortical and thalamic components of augmenting responses: A modeling study Neurocomputing. 26-27

Shao LR, Halvorsrud R, Borg-Graham L, Storm JF. (1999). The role of BK-type Ca2+-dependent K+ channels in spike broadening during repetitive firing in rat hippocampal pyramidal cells. The Journal of physiology. 521 Pt 1 [PubMed]

Sheasby BW, Fohlmeister JF. (1999). Impulse encoding across the dendritic morphologies of retinal ganglion cells. Journal of neurophysiology. 81 [PubMed]

Shen GY, Chen WR, Midtgaard J, Shepherd GM, Hines ML. (1999). Computational analysis of action potential initiation in mitral cell soma and dendrites based on dual patch recordings. Journal of neurophysiology. 82 [PubMed]

Simon JZ, Carr CE, Shamma SA. (1999). A Dendritic Model of Coincidence Detection in the Avian Brainstem. Neurocomputing. 26-27

Sohal VS, Cox CL, Huguenard JR. (1998). Localization of CCK receptors in thalamic reticular neurons: a modeling study. Journal of neurophysiology. 79 [PubMed]

Sohal VS, Huguenard JR. (1998). Long-range connections synchronize rather than spread intrathalamic oscillations: computational modeling and in vitro electrophysiology. Journal of neurophysiology. 80 [PubMed]

Sohal VS, Huntsman MM, Huguenard JR. (2000). Reciprocal inhibitory connections regulate the spatiotemporal properties of intrathalamic oscillations. The Journal of neuroscience : the official journal of the Society for Neuroscience. 20 [PubMed]

Takagi H, Sato R, Mori M, Ito E, Suzuki H. (1998). Roles of A- and D-type K channels in EPSP integration at a model dendrite. Neuroscience letters. 254 [PubMed]

Tang AC, Bartels AM, Wolfe J. (1999). Cholinergic modulation of spike timing and spike rate Neurocomputing. 26-27

Thomas E, Lytton WW. (1998). Computer model of antiepileptic effects mediated by alterations in GABA(A)-mediated inhibition. Neuroreport. 9 [PubMed]

Thomson AM, Destexhe A. (1999). Dual intracellular recordings and computational models of slow inhibitory postsynaptic potentials in rat neocortical and hippocampal slices. Neuroscience. 92 [PubMed]

Thurbon D, Lüscher HR, Hofstetter T, Redman SJ. (1998). Passive electrical properties of ventral horn neurons in rat spinal cord slices. Journal of neurophysiology. 79 [PubMed]

Tsien RW, Noble D, Jack JJB. (1975). Electric Current Flow in Excitable Cells.

Tyc-Dumont S, Korogod SM, Kulagina IB. (1999). Transfer properties of neuronal dendrites with tonically activated conductances. Neurophysiology. 30(4-5)

Vabnick I et al. (1999). Dynamic potassium channel distributions during axonal development prevent aberrant firing patterns. The Journal of neuroscience : the official journal of the Society for Neuroscience. 19 [PubMed]

Vásquez GB et al. (1999). Cysteines beta93 and beta112 as probes of conformational and functional events at the human hemoglobin subunit interfaces. Biophysical journal. 76 [PubMed]

Winslow JL, Jou SF, Wang S, Wojtowicz JM. (1999). Signals in stochastically generated neurons. Journal of computational neuroscience. 6 [PubMed]

Zacksenhouse M, Johnson DH, Williams J, Tsuchitani C. (1998). Single-neuron modeling of LSO unit responses. Journal of neurophysiology. 79 [PubMed]

Zhu JJ, Lytton WW, Xue JT, Uhlrich DJ. (1999). An intrinsic oscillation in interneurons of the rat lateral geniculate nucleus. Journal of neurophysiology. 81 [PubMed]

Zhu JJ, Uhlrich DJ, Lytton WW. (1999). Burst firing in identified rat geniculate interneurons. Neuroscience. 91 [PubMed]

References and models that cite this paper

Akemann W, Lundby A, Mutoh H, Knöpfel T. (2009). Effect of voltage sensitive fluorescent proteins on neuronal excitability. Biophysical journal. 96 [PubMed]

Antunes G, Faria da Silva SF, Simoes de Souza FM. (2018). Mirror Neurons Modeled Through Spike-Timing-Dependent Plasticity are Affected by Channelopathies Associated with Autism Spectrum Disorder. International journal of neural systems. 28 [PubMed]

Anwar H, Hepburn I, Nedelescu H, Chen W, De Schutter E. (2013). Stochastic calcium mechanisms cause dendritic calcium spike variability. The Journal of neuroscience : the official journal of the Society for Neuroscience. 33 [PubMed]

Anwar H, Hong S, De Schutter E. (2012). Controlling Ca2+-activated K+ channels with models of Ca2+ buffering in Purkinje cells. Cerebellum (London, England). 11 [PubMed]

Appukuttan S, Brain KL, Manchanda R. (2015). A computational model of urinary bladder smooth muscle syncytium : validation and investigation of electrical properties. Journal of computational neuroscience. 38 [PubMed]

Appukuttan S, Brain KL, Manchanda R. (2017). Modeling extracellular fields for a three-dimensional network of cells using NEURON. Journal of neuroscience methods. 290 [PubMed]

Behabadi BF, Mel BW. (2007). J4 at sweet 16: a new wrinkle? Neural computation. 19 [PubMed]

Behabadi BF, Polsky A, Jadi M, Schiller J, Mel BW. (2012). Location-dependent excitatory synaptic interactions in pyramidal neuron dendrites. PLoS computational biology. 8 [PubMed]

Benucci A, Verschure PF, König P. (2004). Two-state membrane potential fluctuations driven by weak pairwise correlations. Neural computation. 16 [PubMed]

Bogaard A, Parent J, Zochowski M, Booth V. (2009). Interaction of cellular and network mechanisms in spatiotemporal pattern formation in neuronal networks. The Journal of neuroscience : the official journal of the Society for Neuroscience. 29 [PubMed]

Botta P, de Souza FM, Sangrey T, De Schutter E, Valenzuela CF. (2010). Alcohol excites cerebellar Golgi cells by inhibiting the Na+/K+ ATPase. Neuropsychopharmacology : official publication of the American College of Neuropsychopharmacology. 35 [PubMed]

Brennan EKW, Sudhakar SK, Jedrasiak-Cape I, John TT, Ahmed OJ. (2020). Hyperexcitable Neurons Enable Precise and Persistent Information Encoding in the Superficial Retrosplenial Cortex. Cell reports. 30 [PubMed]

Brette R et al. (2007). Simulation of networks of spiking neurons: a review of tools and strategies. Journal of computational neuroscience. 23 [PubMed]

Broicher T et al. (2007). Specific expression of low-voltage-activated calcium channel isoforms and splice variants in thalamic local circuit interneurons. Molecular and cellular neurosciences. 36 [PubMed]

Broicher T, Kanyshkova T, Meuth P, Pape HC, Budde T. (2008). Correlation of T-channel coding gene expression, IT, and the low threshold Ca2+ spike in the thalamus of a rat model of absence epilepsy. Molecular and cellular neurosciences. 39 [PubMed]

Broicher T et al. (2007). T-current related effects of antiepileptic drugs and a Ca2+ channel antagonist on thalamic relay and local circuit interneurons in a rat model of absence epilepsy. Neuropharmacology. 53 [PubMed]

Brown SA, Moraru II, Schaff JC, Loew LM. (2011). Virtual NEURON: a strategy for merged biochemical and electrophysiological modeling. Journal of computational neuroscience. 31 [PubMed]

Budak M et al. (2021). Contrasting mechanisms for hidden hearing loss: synaptopathy vs myelin defects PLoS computational biology. 17 [PubMed]

Budde T et al. (2008). Reciprocal modulation of I (h) and I (TASK) in thalamocortical relay neurons by halothane. Pflugers Archiv : European journal of physiology. 456 [PubMed]

Calin-Jageman RJ, Katz PS. (2006). A distributed computing tool for generating neural simulation databases. Neural computation. 18 [PubMed]

Calin-Jageman RJ, Tunstall MJ, Mensh BD, Katz PS, Frost WN. (2007). Parameter space analysis suggests multi-site plasticity contributes to motor pattern initiation in Tritonia. Journal of neurophysiology. 98 [PubMed]

Cannon RC, Hasselmo ME, Koene RA. (2003). From biophysics to behavior: Catacomb2 and the design of biologically-plausible models for spatial navigation. Neuroinformatics. 1 [PubMed]

Cannon RC, Howell FW, Goddard NH, De Schutter E. (2002). Non-curated distributed databases for experimental data and models in neuroscience. Network (Bristol, England). 13 [PubMed]

Chan CS et al. (2007). 'Rejuvenation' protects neurons in mouse models of Parkinson's disease. Nature. 447 [PubMed]

Chen Y, Yu FH, Surmeier DJ, Scheuer T, Catterall WA. (2006). Neuromodulation of Na+ channel slow inactivation via cAMP-dependent protein kinase and protein kinase C. Neuron. 49 [PubMed]

Cleland TA, Sethupathy P. (2006). Non-topographical contrast enhancement in the olfactory bulb. BMC neuroscience. 7 [PubMed]

Couto J, Linaro D, De Schutter E, Giugliano M. (2015). On the firing rate dependency of the phase response curve of rat Purkinje neurons in vitro. PLoS computational biology. 11 [PubMed]

Cruz GE, Sahley CL, Muller KJ. (2007). Neuronal competition for action potential initiation sites in a circuit controlling simple learning. Neuroscience. 148 [PubMed]

Dangelo E, Nieus T, Bezzi M, Arleo A, Coenen O. (2005). (chapter) Modeling synaptic transmission and quantifying information transfer in the granular layer of the cerebellum Computational Intelligence and Bioinspired Systems, Proceedings. 3512

Day M et al. (2005). Dendritic excitability of mouse frontal cortex pyramidal neurons is shaped by the interaction among HCN, Kir2, and Kleak channels. The Journal of neuroscience : the official journal of the Society for Neuroscience. 25 [PubMed]

De Schutter E, Simoes-de-Souza FM. (2011). Robustness effect of gap junctions between Golgi cells on cerebellar cortex oscillations Neural Systems & Circuits. 1:7

Deister CA, Chan CS, Surmeier DJ, Wilson CJ. (2009). Calcium-activated SK channels influence voltage-gated ion channels to determine the precision of firing in globus pallidus neurons. The Journal of neuroscience : the official journal of the Society for Neuroscience. 29 [PubMed]

Diwakar S, Magistretti J, Goldfarb M, Naldi G, D'Angelo E. (2009). Axonal Na+ channels ensure fast spike activation and back-propagation in cerebellar granule cells. Journal of neurophysiology. 101 [PubMed]

Djurisic M, Popovic M, Carnevale N, Zecevic D. (2008). Functional structure of the mitral cell dendritic tuft in the rat olfactory bulb. The Journal of neuroscience : the official journal of the Society for Neuroscience. 28 [PubMed]

Dura-Bernal S et al. (2015). Cortical Spiking Network Interfaced with Virtual Musculoskeletal Arm and Robotic Arm. Frontiers in neurorobotics. 9 [PubMed]

Eguchi A, Neymotin SA, Stringer SM. (2014). Color opponent receptive fields self-organize in a biophysical model of visual cortex via spike-timing dependent plasticity Frontiers in neural circuits. 8 [PubMed]

Gertler TS, Chan CS, Surmeier DJ. (2008). Dichotomous anatomical properties of adult striatal medium spiny neurons. The Journal of neuroscience : the official journal of the Society for Neuroscience. 28 [PubMed]

Gold C, Henze DA, Koch C. (2007). Using extracellular action potential recordings to constrain compartmental models. Journal of computational neuroscience. 23 [PubMed]

Gold C, Henze DA, Koch C, Buzsáki G. (2006). On the origin of the extracellular action potential waveform: A modeling study. Journal of neurophysiology. 95 [PubMed]

Gorin M et al. (2016). Interdependent Conductances Drive Infraslow Intrinsic Rhythmogenesis in a Subset of Accessory Olfactory Bulb Projection Neurons. The Journal of neuroscience : the official journal of the Society for Neuroscience. 36 [PubMed]

Gow A, Devaux J. (2008). A model of tight junction function in central nervous system myelinated axons. Neuron glia biology. 4 [PubMed]

Grau-Serrat V, Carr CE, Simon JZ. (2003). Modeling coincidence detection in nucleus laminaris. Biological cybernetics. 89 [PubMed]

Grisham W, Schottler NA, Krasne FB. (2008). SWIMMY: Free Software for Teaching Neurophysiology of Neuronal Circuits. Journal of undergraduate neuroscience education : JUNE : a publication of FUN, Faculty for Undergraduate Neuroscience. 7 [PubMed]

Gulledge AT, Carnevale NT, Stuart GJ. (2012). Electrical advantages of dendritic spines. PloS one. 7 [PubMed]

Hagen E et al. (2017). Focal Local Field Potential Signature of the Single-Axon Monosynaptic Thalamocortical Connection. The Journal of neuroscience : the official journal of the Society for Neuroscience. 37 [PubMed]

Horcholle-Bossavit G, Quenet B, Foucart O. (2007). Oscillation and coding in a formal neural network considered as a guide for plausible simulations of the insect olfactory system. Bio Systems. 89 [PubMed]

Iannella N, Tanaka S. (2006). Synaptic efficacy cluster formation across the dendrite via STDP. Neuroscience letters. 403 [PubMed]

Kahlig KM, Misra SN, George AL. (2006). Impaired inactivation gate stabilization predicts increased persistent current for an epilepsy-associated SCN1A mutation. The Journal of neuroscience : the official journal of the Society for Neuroscience. 26 [PubMed]

Kerr CC et al. (2012). Electrostimulation as a prosthesis for repair of information flow in a computer model of neocortex. IEEE transactions on neural systems and rehabilitation engineering : a publication of the IEEE Engineering in Medicine and Biology Society. 20 [PubMed]

Kerr CC et al. (2013). Cortical information flow in Parkinson's disease: a composite network/field model. Frontiers in computational neuroscience. 7 [PubMed]

Kilinc D, Demir A. (2015). Simulation of noise in neurons and neuronal circuits Proceedings of the IEEE/ACM international conference on computer-aided design (ICCAD).

Kilinc D, Demir A. (2017). Noise in Neuronal and Electronic Circuits: A General Modeling Framework and Non-Monte Carlo Simulation Techniques. IEEE transactions on biomedical circuits and systems. 11 [PubMed]

Koizumi A, Jakobs TC, Masland RH. (2004). Inward rectifying currents stabilize the membrane potential in dendrites of mouse amacrine cells: patch-clamp recordings and single-cell RT-PCR. Molecular vision. 10 [PubMed]

Konstantoudaki X, Papoutsi A, Chalkiadaki K, Poirazi P, Sidiropoulou K. (2014). Modulatory effects of inhibition on persistent activity in a cortical microcircuit model. Frontiers in neural circuits. 8 [PubMed]

Kopp-Scheinpflug C et al. (2011). The sound of silence: ionic mechanisms encoding sound termination. Neuron. 71 [PubMed]

Kumaravelu K, Oza CS, Behrend CE, Grill WM. (2018). Model-based deconstruction of cortical evoked potentials generated by subthalamic nucleus deep brain stimulation. Journal of neurophysiology. 120 [PubMed]

Kumaravelu K, Sombeck J, Miller LE, Bensmaia SJ, Grill WM. (2022). Stoney vs. Histed: Quantifying the spatial effects of intracortical microstimulation Brain stimulation. 15 [PubMed]

Kuznetsova AY, Huertas MA, Kuznetsov AS, Paladini CA, Canavier CC. (2010). Regulation of firing frequency in a computational model of a midbrain dopaminergic neuron. Journal of computational neuroscience. 28 [PubMed]

Le Franc Y, Le Masson G. (2010). Multiple firing patterns in deep dorsal horn neurons of the spinal cord: computational analysis of mechanisms and functional implications. Journal of neurophysiology. 104 [PubMed]

Lee DC, Jensen AL, Schiefer MA, Morgan CW, Grill WM. (2005). Structural mechanisms to produce differential dendritic gains. Brain research. 1033 [PubMed]

Li X, Ascoli GA. (2006). Computational simulation of the input-output relationship in hippocampal pyramidal cells. Journal of computational neuroscience. 21 [PubMed]

Li X, Ascoli GA. (2008). Effects of synaptic synchrony on the neuronal input-output relationship. Neural computation. 20 [PubMed]

Lopreore CL et al. (2008). Computational modeling of three-dimensional electrodiffusion in biological systems: application to the node of Ranvier. Biophysical journal. 95 [PubMed]

Lytton WW, Hines ML. (2005). Independent variable time-step integration of individual neurons for network simulations. Neural computation. 17 [PubMed]

Lytton WW, Neymotin SA, Wester JC, Contreras D. (2011). Neocortical simulation for epilepsy surgery guidance: Localization and intervention Computational Surgery and Dual Training.

Lytton WW, Omurtag A, Neymotin SA, Hines ML. (2008). Just-in-time connectivity for large spiking networks. Neural computation. 20 [PubMed]

Lytton WW et al. (2016). Simulation Neurotechnologies for Advancing Brain Research: Parallelizing Large Networks in NEURON. Neural computation. 28 [PubMed]

Manis PB, Campagnola L. (2018). A biophysical modelling platform of the cochlear nucleus and other auditory circuits: From channels to networks. Hearing research. 360 [PubMed]

Marasco A, Limongiello A, Migliore M. (2012). Fast and accurate low-dimensional reduction of biophysically detailed neuron models. Scientific reports. 2 [PubMed]

Marasco A, Limongiello A, Migliore M. (2013). Using Strahler's analysis to reduce up to 200-fold the run time of realistic neuron models. Scientific reports. 3 [PubMed]

Marra C, Hartke TV, Ringkamp M, Goldfarb M. (2023). Enhanced sodium channel inactivation by temperature and FHF2 deficiency blocks heat nociception Pain. 164 [PubMed]

Martínez-Cañada P et al. (2018). Biophysical network modeling of the dLGN circuit: Effects of cortical feedback on spatial response properties of relay cells. PLoS computational biology. 14 [PubMed]

Masoli S, D'Angelo E. (2017). Synaptic Activation of a Detailed Purkinje Cell Model Predicts Voltage-Dependent Control of Burst-Pause Responses in Active Dendrites. Frontiers in cellular neuroscience. 11 [PubMed]

Masoli S, Ottaviani A, Casali S, D'Angelo E. (2020). Cerebellar Golgi cell models predict dendritic processing and mechanisms of synaptic plasticity. PLoS computational biology. 16 [PubMed]

Matsubara T, Torikai H. (2016). An Asynchronous Recurrent Network of Cellular Automaton-Based Neurons and Its Reproduction of Spiking Neural Network Activities. IEEE transactions on neural networks and learning systems. 27 [PubMed]

Maurice N et al. (2004). D2 dopamine receptor-mediated modulation of voltage-dependent Na+ channels reduces autonomous activity in striatal cholinergic interneurons. The Journal of neuroscience : the official journal of the Society for Neuroscience. 24 [PubMed]

McDougal RA, Bulanova AS, Lytton WW. (2016). Reproducibility in Computational Neuroscience Models and Simulations. IEEE transactions on bio-medical engineering. 63 [PubMed]

McDougal RA, Morse TM, Hines ML, Shepherd GM. (2015). ModelView for ModelDB: Online Presentation of Model Structure. Neuroinformatics. 13 [PubMed]

Medlock L et al. (2022). Multiscale computer model of the spinal dorsal horn reveals changes in network processing associated with chronic pain The Journal of neuroscience : the official journal of the Society for Neuroscience. 42 [PubMed]

Mercer JN, Chan CS, Tkatch T, Held J, Surmeier DJ. (2007). Nav1.6 sodium channels are critical to pacemaking and fast spiking in globus pallidus neurons. The Journal of neuroscience : the official journal of the Society for Neuroscience. 27 [PubMed]

Meuth SG et al. (2006). Membrane resting potential of thalamocortical relay neurons is shaped by the interaction among TASK3 and HCN2 channels. Journal of neurophysiology. 96 [PubMed]

Migliore M, Hines ML, Shepherd GM. (2005). The role of distal dendritic gap junctions in synchronization of mitral cell axonal output. Journal of computational neuroscience. 18 [PubMed]

Moubarak E et al. (2019). Robustness to Axon Initial Segment Variation Is Explained by Somatodendritic Excitability in Rat Substantia Nigra Dopaminergic Neurons. The Journal of neuroscience : the official journal of the Society for Neuroscience. 39 [PubMed]

Nakano T, Yoshimoto J, Doya K. (2013). A model-based prediction of the calcium responses in the striatal synaptic spines depending on the timing of cortical and dopaminergic inputs and post-synaptic spikes. Frontiers in computational neuroscience. 7 [PubMed]

Neymotin SA, Jacobs KM, Fenton AA, Lytton WW. (2011). Synaptic information transfer in computer models of neocortical columns. Journal of computational neuroscience. 30 [PubMed]

Neymotin SA et al. (2011). Ketamine disrupts ? modulation of ? in a computer model of hippocampus. The Journal of neuroscience : the official journal of the Society for Neuroscience. 31 [PubMed]

Neymotin SA et al. (2011). Ketamine Disrupts Theta Modulation of Gamma in a Computer Model of Hippocampus The Journal of neuroscience : the official journal of the Society for Neuroscience. 31 [PubMed]

Neymotin SA, Lee H, Park E, Fenton AA, Lytton WW. (2011). Emergence of physiological oscillation frequencies in a computer model of neocortex. Frontiers in computational neuroscience. 5 [PubMed]

Nieus T et al. (2006). LTP regulates burst initiation and frequency at mossy fiber-granule cell synapses of rat cerebellum: experimental observations and theoretical predictions. Journal of neurophysiology. 95 [PubMed]

O'Connor S, Angelo K, Jacob TJ. (2012). Burst firing versus synchrony in a gap junction connected olfactory bulb mitral cell network model Frontiers in computational neuroscience. 6 [PubMed]

Olivares E et al. (2015). TRPM8-Dependent Dynamic Response in a Mathematical Model of Cold Thermoreceptor. PloS one. 10 [PubMed]

Otopalik AG et al. (2017). Sloppy morphological tuning in identified neurons of the crustacean stomatogastric ganglion. eLife. 6 [PubMed]

Papoutsi A, Kastellakis G, Poirazi P. (2017). Basal tree complexity shapes functional pathways in the prefrontal cortex. Journal of neurophysiology. 118 [PubMed]

Papoutsi A, Sidiropoulou K, Cutsuridis V, Poirazi P. (2013). Induction and modulation of persistent activity in a layer V PFC microcircuit model. Frontiers in neural circuits. 7 [PubMed]

Papoutsi A, Sidiropoulou K, Poirazi P. (2014). Dendritic nonlinearities reduce network size requirements and mediate ON and OFF states of persistent activity in a PFC microcircuit model. PLoS computational biology. 10 [PubMed]

Park DS et al. (2020). Ionic Mechanisms of Impulse Propagation Failure in the FHF2-Deficient Heart. Circulation research. 127 [PubMed]

Park J et al. (2019). Contribution of apical and basal dendrites to orientation encoding in mouse V1 L2/3 pyramidal neurons Nature Communications. 10

Pezo D, Soudry D, Orio P. (2014). Diffusion approximation-based simulation of stochastic ion channels: which method to use? Frontiers in computational neuroscience. 8 [PubMed]

Podlaski WF et al. (2017). Mapping the function of neuronal ion channels in model and experiment. eLife. 6 [PubMed]

Prescott SA, De Koninck Y. (2003). Gain control of firing rate by shunting inhibition: roles of synaptic noise and dendritic saturation. Proceedings of the National Academy of Sciences of the United States of America. 100 [PubMed]

Reilly JP. (2016). Survey of numerical electrostimulation models. Physics in medicine and biology. 61 [PubMed]

Rich S, Moradi Chameh H, Sekulic V, Valiante TA, Skinner FK. (2021). Modeling Reveals Human-Rodent Differences in H-Current Kinetics Influencing Resonance in Cortical Layer 5 Neurons. Cerebral cortex (New York, N.Y. : 1991). 31 [PubMed]

Richert M, Nageswaran JM, Dutt N, Krichmar JL. (2011). An efficient simulation environment for modeling large-scale cortical processing. Frontiers in neuroinformatics. 5 [PubMed]

Rubin DB, Cleland TA. (2006). Dynamical mechanisms of odor processing in olfactory bulb mitral cells. Journal of neurophysiology. 96 [PubMed]

Savtchenko LP et al. (2018). Disentangling astroglial physiology with a realistic cell model in silico. Nature communications. 9 [PubMed]

Scorcioni R, Lazarewicz MT, Ascoli GA. (2004). Quantitative morphometry of hippocampal pyramidal cells: differences between anatomical classes and reconstructing laboratories. The Journal of comparative neurology. 473 [PubMed]

Sekulić V, Chen TC, Lawrence JJ, Skinner FK. (2015). Dendritic distributions of I h channels in experimentally-derived multi-compartment models of oriens-lacunosum/moleculare (O-LM) hippocampal interneurons. Frontiers in synaptic neuroscience. 7 [PubMed]

Short SM, Morse TM, McTavish TS, Shepherd GM, Verhagen JV. (2016). Respiration Gates Sensory Input Responses in the Mitral Cell Layer of the Olfactory Bulb. PloS one. 11 [PubMed]

Sikora MA, Gottesman J, Miller RF. (2005). A computational model of the ribbon synapse. Journal of neuroscience methods. 145 [PubMed]

Solinas S et al. (2007). Computational reconstruction of pacemaking and intrinsic electroresponsiveness in cerebellar Golgi cells. Frontiers in cellular neuroscience. 1 [PubMed]

Stockton DB, Santamaria F. (2015). NeuroManager: a workflow analysis based simulation management engine for computational neuroscience. Frontiers in neuroinformatics. 9 [PubMed]

Sudhakar SK, Choi TJ, Ahmed OJ. (2019). Biophysical Modeling Suggests Optimal Drug Combinations for Improving the Efficacy of GABA Agonists after Traumatic Brain Injuries. Journal of neurotrauma. 36 [PubMed]

Sudhakar SK et al. (2017). Spatiotemporal network coding of physiological mossy fiber inputs by the cerebellar granular layer. PLoS computational biology. 13 [PubMed]

Sudhakar SK, Torben-Nielsen B, De Schutter E. (2015). Cerebellar Nuclear Neurons Use Time and Rate Coding to Transmit Purkinje Neuron Pauses. PLoS computational biology. 11 [PubMed]

Takagi H, Kawasaki M. (2003). Modeling of time disparity detection by the Hodgkin-Huxley equations. Journal of comparative physiology. A, Neuroethology, sensory, neural, and behavioral physiology. 189 [PubMed]

Tejada J, Arisi GM, García-Cairasco N, Roque AC. (2012). Morphological alterations in newly born dentate gyrus granule cells that emerge after status epilepticus contribute to make them less excitable. PloS one. 7 [PubMed]

Tejada J, Garcia-Cairasco N, Roque AC. (2014). Combined role of seizure-induced dendritic morphology alterations and spine loss in newborn granule cells with mossy fiber sprouting on the hyperexcitability of a computer model of the dentate gyrus. PLoS computational biology. 10 [PubMed]

Uebachs M et al. (2010). Efficacy loss of the anticonvulsant carbamazepine in mice lacking sodium channel beta subunits via paradoxical effects on persistent sodium currents. The Journal of neuroscience : the official journal of the Society for Neuroscience. 30 [PubMed]

Urban NN, Castro JB. (2005). Tuft calcium spikes in accessory olfactory bulb mitral cells. The Journal of neuroscience : the official journal of the Society for Neuroscience. 25 [PubMed]

Vitko I et al. (2005). Functional characterization and neuronal modeling of the effects of childhood absence epilepsy variants of CACNA1H, a T-type calcium channel. The Journal of neuroscience : the official journal of the Society for Neuroscience. 25 [PubMed]

Watanabe T, Shimazaki T, Oda Y. (2017). Coordinated Expression of Two Types of Low-Threshold K+ Channels Establishes Unique Single Spiking of Mauthner Cells among Segmentally Homologous Neurons in the Zebrafish Hindbrain. eNeuro. 4 [PubMed]

Wolf JA et al. (2005). NMDA/AMPA ratio impacts state transitions and entrainment to oscillations in a computational model of the nucleus accumbens medium spiny projection neuron. The Journal of neuroscience : the official journal of the Society for Neuroscience. 25 [PubMed]

Wu T, Fan J, Lee KS, Li X. (2016). Cortical neuron activation induced by electromagnetic stimulation: a quantitative analysis via modelling and simulation. Journal of computational neuroscience. 40 [PubMed]

Yi G, Grill WM. (2018). Frequency-dependent antidromic activation in thalamocortical relay neurons: effects of synaptic inputs. Journal of neural engineering. 15 [PubMed]

Yu N, Canavier CC. (2015). A Mathematical Model of a Midbrain Dopamine Neuron Identifies Two Slow Variables Likely Responsible for Bursts Evoked by SK Channel Antagonists and Terminated by Depolarization Block. Journal of mathematical neuroscience. 5 [PubMed]

Yu Y, Migliore M, Hines ML, Shepherd GM. (2014). Sparse coding and lateral inhibition arising from balanced and unbalanced dendrodendritic excitation and inhibition. The Journal of neuroscience : the official journal of the Society for Neuroscience. 34 [PubMed]

Zaika O et al. (2006). Angiotensin II regulates neuronal excitability via phosphatidylinositol 4,5-bisphosphate-dependent modulation of Kv7 (M-type) K+ channels. The Journal of physiology. 575 [PubMed]

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