Model Type: Channel/Receptor

  1. 3D model of the olfactory bulb (Migliore et al. 2014)
  2. A Markov model of human Cav2.3 channels and their modulation by Zn2+ (Neumaier et al 2020)
  3. A model of ASIC1a and synaptic cleft pH modulating wind-up in wide dynamic range neurons (Delrocq)
  4. A model of beta-adrenergic modulation of IKs in the guinea-pig ventricle (Severi et al. 2009)
  5. A modified Morris-Lecar with TRPC4 & GIRK (Tian et al. 2022)
  6. A nicotinic acetylcholine receptor kinetic model (Edelstein et al. 1996)
  7. A single kinetic model for all human voltage-gated sodium channels (Balbi et al, 2017)
  8. Action Potential initiation and backpropagation in Neocortical L5 Pyramidal Neuron (Hu et al. 2009)
  9. Active dendrites shape signaling microdomains in hippocampal neurons (Basak & Narayanan 2018)
  10. Allosteric gating of K channels (Horrigan et al 1999)
  11. Ambient glutamate shapes AMPA receptor responses to simulated transients (Balmer et al. 2021)
  12. An allosteric kinetics of NMDARs in STDP (Urakubo et al. 2008)
  13. Availability of low-threshold Ca2+ current in retinal ganglion cells (Lee SC et al. 2003)
  14. BCM-like synaptic plasticity with conductance-based models (Narayanan Johnston, 2010)
  15. Biologically Constrained Basal Ganglia model (BCBG model) (Lienard, Girard 2014)
  16. Ca+/HCN channel-dependent persistent activity in multiscale model of neocortex (Neymotin et al 2016)
  17. Ca-dependent K Channel: kinetics from rat muscle (Moczydlowski, Latorre 1983) NEURON
  18. Ca-dependent K Channel: kinetics from rat muscle (Moczydlowski, Latorre 1983) XPP
  19. CA1 interneuron: K currents (Lien et al 2002)
  20. CA1 pyramidal neuron: Dendritic Na+ spikes are required for LTP at distal synapses (Kim et al 2015)
  21. CA1 pyramidal neuron: effects of R213Q and R312W Kv7.2 mutations (Miceli et al. 2013)
  22. CA1 pyramidal neuron: functional significance of axonal Kv7 channels (Shah et al. 2008)
  23. CA1 pyramidal neuron: Ih current (Migliore et al. 2012)
  24. CA1 pyramidal neuron: Persistent Na current mediates steep synaptic amplification (Hsu et al 2018)
  25. CA1 pyramidal neurons: effects of Alzheimer (Culmone and Migliore 2012)
  26. Ca2+ current versus Ca2+ channel cooperativity of exocytosis (Matveev et al. 2009)
  27. CA3 Radiatum/Lacunosum-Moleculare interneuron, Ih (Anderson et al. 2011)
  28. Calcium waves and mGluR-dependent synaptic plasticity in CA1 pyr. neurons (Ashhad & Narayanan 2013)
  29. Cardiac action potential based on Luo-Rudy phase 1 model (Luo and Rudy 1991), (Wu 2004)
  30. Cell signaling/ion channel variability effects on neuronal response (Anderson, Makadia, et al. 2015)
  31. Channel parameter estimation from current clamp and neuronal properties (Toth, Crunelli 2001)
  32. Circadian rhythmicity shapes astrocyte morphology and neuronal function in CA1 (McCauley et al 2020)
  33. CN Octopus Cell: Ih current (Bal, Oertel 2000)
  34. Coincident signals in Olfactory Bulb Granule Cell spines (Aghvami et al 2019)
  35. Computational modelling of channelrhodopsin-2 photocurrent characteristics (Stefanescu et al. 2013)
  36. Consequences of HERG mutations in the long QT syndrome (Clancy, Rudy 2001)
  37. Dentate granule cell: mAHP & sAHP; SK & Kv7/M channels (Mateos-Aparicio et al., 2014)
  38. DG granule cell: I-A model (Beck et al 1992)
  39. Double cable myelinated axon (Layer 5 pyramidal neuron; Cohen et al 2020)
  40. Effect of slowly inactivating IKdr to delayed firing of action potentials (Wu et al. 2008)
  41. Effects of eugenol on the firing of action potentials in NG108-15 neurons (Huang et al. 2011)
  42. Efffect of propofol on potassium current in cardiac H9c2 cells (Liu et al. 2008)
  43. Elementary mechanisms producing facilitation of Cav2.1 (P/Q-type) channels
  44. Endocannabinoid dynamics gate spike-timing dependent depression and potentiation (Cui et al 2016)
  45. Evaluation of stochastic diff. eq. approximation of ion channel gating models (Bruce 2009)
  46. Experimental and modeling studies of desensitization of P2X3 receptors (Sokolova et al. 2006)
  47. Febrile seizure-induced modifications to Ih (Chen et al 2001)
  48. Gap junction coupled network of striatal fast spiking interneurons (Hjorth et al. 2009)
  49. Globus pallidus neuron models with differing dendritic Na channel expression (Edgerton et al., 2010)
  50. HMM of Nav1.7 WT and F1449V (Gurkiewicz et al. 2011)
  51. Hodgkin-Huxley model of persistent activity in PFC neurons (Winograd et al. 2008) (NEURON python)
  52. Hodgkin-Huxley model of persistent activity in prefrontal cortex neurons (Winograd et al. 2008)
  53. Hodgkin-Huxley models of different classes of cortical neurons (Pospischil et al. 2008)
  54. Hodgkin–Huxley model with fractional gating (Teka et al. 2016)
  55. Honey bee receptor and antennal lobe model (Chan et al 2018)
  56. Hypocretin and Locus Coeruleus model neurons (Carter et al 2012)
  57. Hysteresis in voltage gating of HCN channels (Elinder et al 2006, Mannikko et al 2005)
  58. Intrinsic sensory neurons of the gut (Chambers et al. 2014)
  59. Ion channel modeling with whole cell and a genetic algorithm (Gurkiewicz and Korngreen 2007)
  60. IP3R model comparison (Hituri and Linne 2013)
  61. Kinetic properties of voltage gated Na channel (Nayak and Sikdar 2007)
  62. Kinetics of the P2X7 receptor as expressed in Xenopus oocytes (Riedel et al. 2007a,b)
  63. KV1 channel governs cerebellar output to thalamus (Ovsepian et al. 2013)
  64. Kv4.3, Kv1.4 encoded K(+) channel in heart cells (Greenstein et al 2000) (XPP)
  65. Large scale model of the olfactory bulb (Yu et al., 2013)
  66. Look-Up Table Synapse (LUTsyn) models for AMPA and NMDA (Pham et al., 2021)
  67. Markov models of SCN1A (NaV1.1) applied to abnormal gating and epilepsy (Clancy and Kass 2004)
  68. Markovian model for cardiac sodium channel (Clancy, Rudy 2002)
  69. Markovian model for single-channel recordings of Ik_1 in ventricular cells (Matsuoka et al 2003)
  70. Membrane electrical properties of mouse CA1 pyramidal cells during strong inputs (Bianchi et al 22)
  71. Na+ Signals in olfactory bulb neurons (granule cell model) (Ona-Jodar et al. 2017)
  72. Neocortical Layer I: I-A and I-K (Zhou, Hablitz 1996)
  73. NeuroGPU example on L5_TTPC1_cADpyr232_1 (Ben-Shalom 2022)(Ramaswamy et al., 2015)
  74. Neurophysiological impact of inactivation pathways in A-type K+ channels (Fineberg et al 2012)
  75. Neuroprotective Role of Gap Junctions in a Neuron Astrocyte Network Model (Huguet et al 2016)
  76. Nicotinic control of dopamine release in nucleus accumbens (Maex et al. 2014)
  77. Novel Na current with slow de-inactivation (Tsutsui, Oka 2002)
  78. Olfactory Mitral Cell: I-A and I-K currents (Wang et al 1996)
  79. Olfactory Periglomerular Cells: I-h kinetics (Cadetti, Belluzzi 2001)
  80. On stochastic diff. eq. models for ion channel noise in Hodgkin-Huxley neurons (Goldwyn et al. 2010)
  81. Optical stimulation of a channelrhodopsin-2 positive pyramidal neuron model (Foutz et al 2012)
  82. Pancreatic Beta Cell signalling pathways (Fridlyand & Philipson 2016) (MATLAB)
  83. Parametric computation and persistent gamma in a cortical model (Chambers et al. 2012)
  84. Permeation and inactivation of CaV1.2 Ca2+ channels (Babich et al. 2007)
  85. Phenomenological models of NaV1.5: Hodgkin-Huxley and kinetic formalisms (Andreozzi et al 2019)
  86. Pipette and membrane patch geometry effects on GABAa currents patch-clamp exps (Moroni et al. 2011)
  87. Preserving axosomatic spiking features despite diverse dendritic morphology (Hay et al., 2013)
  88. Principles of Computational Modelling in Neuroscience (Book) (Sterratt et al. 2011)
  89. Pyramidal Neuron Deep: K+ kinetics (Korngreen, Sakmann 2000)
  90. PyRhO: A multiscale optogenetics simulation platform (Evans et al 2016)
  91. Rat alpha7 nAChR desensitization is modulated by W55 (Gay et al. 2008)
  92. Response of AMPA receptor kinetic model to glutamate release distance (Allam et al., 2015)
  93. Resurgent sodium transient current in zebra finch RA (Zemel et al., 2021)
  94. Retinal Ganglion Cell: I-A (Benison et al 2001)
  95. Retinal Ganglion Cell: I-CaN and I-CaL (Benison et al. 2001)
  96. Retinal Ganglion Cell: I-K (Skaliora et al 1995)
  97. Retinal Ganglion Cell: I-Na,t (Benison et al 2001)
  98. Retinal Photoreceptor: I Potassium (Beech, Barnes 1989)
  99. Role of KCNQ1 and IKs in cardiac repolarization (Silva, Rudy 2005)
  100. Role of KCNQ1 and IKs in cardiac repolarization (Silva, Rudy 2005) (XPP)
  101. Simulating ion channel noise in an auditory brainstem neuron model (Schmerl & McDonnell 2013)
  102. Sodium currents activate without a delay (Baranauskas and Martina 2006)
  103. Specific inhibition of dendritic plateau potential in striatal projection neurons (Du et al 2017)
  104. Spike propagation in dendrites with stochastic ion channels (Diba et al. 2006)
  105. Spinal Motor Neuron: Na, K_A, and K_DR currents (Safronov, Vogel 1995)
  106. Spiny Projection Neuron Ca2+ based plasticity is robust to in vivo spike train (Dorman&Blackwell)
  107. Spontaneous firing caused by stochastic channel gating (Chow, White 1996)
  108. State dependent drug binding to sodium channels in the dentate gyrus (Thomas & Petrou 2013)
  109. Stochastic automata network Markov model descriptors of coupled Ca2+ channels (Nguyen et al. 2005)
  110. Stochastic ion channels and neuronal morphology (Cannon et al. 2010)
  111. Stochastic model of the olfactory cilium transduction and adaptation (Antunes et al 2014)
  112. Striatal D1R medium spiny neuron, including a subcellular DA cascade (Lindroos et al 2018)
  113. Subthreshold inact. of K channels modulates APs in bitufted interneurons (Korngreen et al 2005)
  114. Synergistic inhibitory action of oxcarbazepine on INa and IK (Huang et al. 2008)
  115. T channel currents (Vitko et al 2005)
  116. T-type Calcium currents (McRory et al 2001)
  117. Thalamic Relay Neuron: I-h (McCormick, Pape 1990)
  118. Thalamic Relay Neuron: I-T current (Williams, Stuart 2000)
  119. Voltage and light-sensitive Channelrhodopsin-2 model (ChR2-H134R) (Williams et al. 2013) (NEURON)
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