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• CA1 pyramidal neuron: as a 2-layer NN and subthreshold synaptic summation (Poirazi et al 2003) [Model]

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• 2 Distinct Classes of L2 and L3 Pyramidal Neurons in Human Temporal Cortex (Deitcher et al 2017) [Model]

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• Dendritic Na inactivation drives a decrease in ISI (Fernandez et al 2005) [Model]

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• Spine neck plasticity controls postsynaptic calcium signals (Grunditz et al. 2008) [Model]

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• Linear vs non-linear integration in CA1 oblique dendrites (Gómez González et al. 2011) [Model]

Górski T et al. (2018). Dendritic sodium spikes endow neurons with inverse firing rate response to correlated synaptic activity. Journal of computational neuroscience. 45 [PubMed]

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Hao J, Wang XD, Dan Y, Poo MM, Zhang XH. (2009). An arithmetic rule for spatial summation of excitatory and inhibitory inputs in pyramidal neurons. Proceedings of the National Academy of Sciences of the United States of America. 106 [PubMed]

• Spatial summation of excitatory and inhibitory inputs in pyramidal neurons (Hao et al. 2010) [Model]

Hawkins J, Ahmad S. (2016). Why Neurons Have Thousands of Synapses, a Theory of Sequence Memory in Neocortex. Frontiers in neural circuits. 10 [PubMed]

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Hay E, Segev I. (2015). Dendritic Excitability and Gain Control in Recurrent Cortical Microcircuits. Cerebral cortex (New York, N.Y. : 1991). 25 [PubMed]

• Microcircuits of L5 thick tufted pyramidal cells (Hay & Segev 2015) [Model]
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Hyun JH et al. (2015). Kv1.2 mediates heterosynaptic modulation of direct cortical synaptic inputs in CA3 pyramidal cells. The Journal of physiology. 593 [PubMed]

• CA3 pyramidal neurons: Kv1.2 mediates modulation of cortical inputs (Hyun et al., 2015) [Model]

Iannella N, Tanaka S. (2006). Synaptic efficacy cluster formation across the dendrite via STDP. Neuroscience letters. 403 [PubMed]

Jolivet R, Gerstner W. (2004). Predicting spike times of a detailed conductance-based neuron model driven by stochastic spike arrival. Journal of physiology, Paris. 98 [PubMed]

Jolivet R, Rauch A, Lüscher HR, Gerstner W. (2006). Predicting spike timing of neocortical pyramidal neurons by simple threshold models. Journal of computational neuroscience. 21 [PubMed]

• Spike Response Model simulator (Jolivet et al. 2004, 2006, 2008) [Model]

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• Calcium spikes in basal dendrites (Kampa and Stuart 2006) [Model]

Katona G et al. (2011). Roller Coaster Scanning reveals spontaneous triggering of dendritic spikes in CA1 interneurons. Proceedings of the National Academy of Sciences of the United States of America. 108 [PubMed]

• CA1 stratum radiatum interneuron multicompartmental model (Katona et al. 2011) [Model]

Katz Y et al. (2009). Synapse distribution suggests a two-stage model of dendritic integration in CA1 pyramidal neurons. Neuron. 63 [PubMed]

• A two-stage model of dendritic integration in CA1 pyramidal neurons (Katz et al. 2009) [Model]

Keren N, Peled N, Korngreen A. (2005). Constraining compartmental models using multiple voltage recordings and genetic algorithms. Journal of neurophysiology. 94 [PubMed]

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• Synaptic integration in tuft dendrites of layer 5 pyramidal neurons (Larkum et al. 2009) [Model]

Lavzin M, Rapoport S, Polsky A, Garion L, Schiller J. (2012). Nonlinear dendritic processing determines angular tuning of barrel cortex neurons in vivo. Nature. 490 [PubMed]

• Nonlinear dendritic processing in barrel cortex spiny stellate neurons (Lavzin et al. 2012) [Model]

Le Franc Y, Le Masson G. (2010). Multiple firing patterns in deep dorsal horn neurons of the spinal cord: computational analysis of mechanisms and functional implications. Journal of neurophysiology. 104 [PubMed]

Li X, Ascoli GA. (2008). Effects of synaptic synchrony on the neuronal input-output relationship. Neural computation. 20 [PubMed]

• CA1 pyramidal neuron synaptic integration (Li and Ascoli 2006, 2008) [Model]

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• Computational Surgery (Lytton et al. 2011) [Model]

Major G, Polsky A, Denk W, Schiller J, Tank DW. (2008). Spatiotemporally graded NMDA spike/plateau potentials in basal dendrites of neocortical pyramidal neurons. Journal of neurophysiology. 99 [PubMed]

Menon V et al. (2013). Balanced synaptic impact via distance-dependent synapse distribution and complementary expression of AMPARs and NMDARs in hippocampal dendrites. Neuron. 80 [PubMed]

• Distance-dependent synaptic strength in CA1 pyramidal neurons (Menon et al. 2013) [Model]

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• CA1 pyramidal neuron: signal propagation in oblique dendrites (Migliore et al 2005) [Model]

Miller JA, Kenyon GT. (2007). Extracting number-selective responses from coherent oscillations in a computer model. Neural computation. 19 [PubMed]

Morita K. (2008). Possible role of dendritic compartmentalization in the spatial working memory circuit. The Journal of neuroscience : the official journal of the Society for Neuroscience. 28 [PubMed]

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Nevian T, Larkum ME, Polsky A, Schiller J. (2007). Properties of basal dendrites of layer 5 pyramidal neurons: a direct patch-clamp recording study. Nature neuroscience. 10 [PubMed]

• Dendritic Na+ spike initiation and backpropagation of APs in active dendrites (Nevian et al. 2007) [Model]

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• Neuronal computation evoked by extra-large spines (Obi-Nagata et al., 2023) [Model]

Olshausen BA, Field DJ. (2005). How close are we to understanding v1? Neural computation. 17 [PubMed]

Poleg-Polsky A. (2015). Effects of Neural Morphology and Input Distribution on Synaptic Processing by Global and Focal NMDA-Spikes. PloS one. 10 [PubMed]

• Effects of neural morphology on global and focal NMDA-spikes (Poleg-Polsky 2015) [Model]

Poleg-Polsky A. (2019). Dendritic spikes expand the range of well-tolerated population noise structures. The Journal of neuroscience : the official journal of the Society for Neuroscience. 39 [PubMed]

• Distinct integration properties of noisy inputs in active dendritic subunits (Poleg-Polsky 2019) [Model]

Poleg-Polsky A, Diamond JS. (2016). NMDA Receptors Multiplicatively Scale Visual Signals and Enhance Directional Motion Discrimination in Retinal Ganglion Cells. Neuron. 89 [PubMed]

• Multiplication by NMDA receptors in Direction Selective Ganglion cells (Poleg-Polsky & Diamond 2016) [Model]

Polsky A, Mel B, Schiller J. (2009). Encoding and decoding bursts by NMDA spikes in basal dendrites of layer 5 pyramidal neurons. The Journal of neuroscience : the official journal of the Society for Neuroscience. 29 [PubMed]

• NMDA spikes in basal dendrites of L5 pyramidal neurons (Polsky et al. 2009) [Model]

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• Homeostatic synaptic plasticity (Rabinowitch and Segev 2006a,b) [Model]

Rabinowitch I, Segev I. (2006). The endurance and selectivity of spatial patterns of long-term potentiation/depression in dendrites under homeostatic synaptic plasticity. The Journal of neuroscience : the official journal of the Society for Neuroscience. 26 [PubMed]

• Homeostatic synaptic plasticity (Rabinowitch and Segev 2006a,b) [Model]

Rabinowitch I, Segev I. (2008). Two opposing plasticity mechanisms pulling a single synapse. Trends in neurosciences. 31 [PubMed]

• Homeostatic synaptic plasticity (Rabinowitch and Segev 2006a,b) [Model]

Rhodes P. (2006). The properties and implications of NMDA spikes in neocortical pyramidal cells. The Journal of neuroscience : the official journal of the Society for Neuroscience. 26 [PubMed]

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• Cell-type specific integration of feedforward and feedback synaptic inputs (Ridner et al, 2022) [Model]

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• Intracortical synaptic potential modulation by presynaptic somatic potential (Shu et al. 2006, 2007) [Model]

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• Dendritic spikes enhance stimulus selectivity in cortical neurons in vivo (Smith et al 2013) [Model]

Takashima A, Hikosaka R, Takahata M. (2006). Functional significance of passive and active dendritic properties in the synaptic integration by an identified nonspiking interneuron of crayfish. Journal of neurophysiology. 96 [PubMed]

• Synaptic integration of an identified nonspiking interneuron in crayfish (Takashima et al 2006) [Model]

Tamosiunaite M, Porr B, Wörgötter F. (2007). Self-influencing synaptic plasticity: recurrent changes of synaptic weights can lead to specific functional properties. Journal of computational neuroscience. 23 [PubMed]

• Self-influencing synaptic plasticity (Tamosiunaite et al. 2007) [Model]

Timofeeva Y, Lord GJ, Coombes S. (2006). Spatio-temporal filtering properties of a dendritic cable with active spines: a modeling study in the spike-diffuse-spike framework. Journal of computational neuroscience. 21 [PubMed]

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• Fast Spiking Basket cells (Tzilivaki et al 2019) [Model]

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• Global and multiplexed dendritic computations under in vivo-like conditions (Ujfalussy et al 2018) [Model]

Urban NN, Castro JB. (2005). Tuft calcium spikes in accessory olfactory bulb mitral cells. The Journal of neuroscience : the official journal of the Society for Neuroscience. 25 [PubMed]

Wang XD, Hao J, Poo MM , Zhang XH. (2006). How does a neuron perform subtraction? - Arithmetic rules of synaptic integration of excitation and inhibition Advances in Neural Networks-ISNN 2006. 3971