Brain Region/Organism: Hippocampus

  1. A computational model of systems memory consolidation and reconsolidation (Helfer & Shultz 2019)
  2. A fast model of voltage-dependent NMDA Receptors (Moradi et al. 2013)
  3. A model of neurovascular coupling and the BOLD response (Mathias et al 2017, Kenny et al 2018)
  4. A model of unitary responses from A/C and PP synapses in CA3 pyramidal cells (Baker et al. 2010)
  5. A model of ventral Hippocampal CA1 pyramidal neurons of Tg2576 AD mice (Spoleti et al. 2021)
  6. A neurocomputational model of classical conditioning phenomena (Moustafa et al. 2009)
  7. A NN with synaptic depression for testing the effects of connectivity on dynamics (Jacob et al 2019)
  8. A two-stage model of dendritic integration in CA1 pyramidal neurons (Katz et al. 2009)
  9. Acetylcholine Boosts Dendritic NMDA Spikes in a CA3 Pyramidal Neuron Model (Humphries et al., 2021)
  10. Actions of Rotenone on ionic currents and MEPPs in Mouse Hippocampal Neurons (Huang et al 2018)
  11. Active dendrites shape signaling microdomains in hippocampal neurons (Basak & Narayanan 2018)
  12. Activity-dependent broadening of axonal spikes by inactivating K channels (Zheng & Kamiya 2023)
  13. Adaptive Generalized Leaky Integrate-and-Fire Model (AGLIF) (Marasco et al., 2023)
  14. Age-dependent excitability of CA1 pyramidal neurons in APPPS1 Alzheimer's model (Vitale et al 2021)
  15. Amyloid-beta effects on release probability and integration at CA3-CA1 synapses (Romani et al. 2013)
  16. An integrated deep learning-based model of spatial cells that combines self-motion with sensory information (Aziz et al., 2022)
  17. Axonal K channel inhibition promotes ectopic burst of hippocampal mossy fiber (Kamiya 2024)
  18. Axonal NaV1.6 Sodium Channels in AP Initiation of CA1 Pyramidal Neurons (Royeck et al. 2008)
  19. Axonal subthreshold voltage signaling along hippocampal mossy fiber (Kamiya 2022)
  20. BCM-like synaptic plasticity with conductance-based models (Narayanan Johnston, 2010)
  21. Behavioral time scale synaptic plasticity underlies CA1 place fields (Bittner et al. 2017)
  22. CA1 network model for place cell dynamics (Turi et al 2019)
  23. CA1 network model: interneuron contributions to epileptic deficits (Shuman et al 2020)
  24. CA1 PV+ fast-firing hippocampal interneuron (Ferguson et al. 2013)
  25. CA1 pyr cell: Inhibitory modulation of spatial selectivity+phase precession (Grienberger et al 2017)
  26. CA1 pyr cell: phenomenological NMDAR-based model of synaptic plasticity (Dainauskas et al 2023)
  27. CA1 pyramidal cell: reconstructed axonal arbor and failures at weak gap junctions (Vladimirov 2011)
  28. CA1 pyramidal neuron (Combe et al 2018)
  29. CA1 pyramidal neuron (Ferguson et al. 2014)
  30. CA1 pyramidal neuron to study INaP properties and repetitive firing (Uebachs et al. 2010)
  31. CA1 pyramidal neuron: action potential backpropagation (Gasparini & Migliore 2015)
  32. CA1 pyramidal neuron: dendritic Ca2+ inhibition (Muellner et al. 2015)
  33. CA1 pyramidal neuron: Dendritic Na+ spikes are required for LTP at distal synapses (Kim et al 2015)
  34. CA1 pyramidal neuron: depolarization block (Bianchi et al. 2012)
  35. CA1 pyramidal neuron: effects of R213Q and R312W Kv7.2 mutations (Miceli et al. 2013)
  36. CA1 pyramidal neuron: h channel-dependent deficit of theta oscill. resonance (Marcelin et al. 2008)
  37. CA1 pyramidal neuron: Ih current (Migliore et al. 2012)
  38. CA1 pyramidal neuron: nonlinear a5-GABAAR controls synaptic NMDAR activation (Schulz et al 2018)
  39. CA1 pyramidal neuron: Persistent Na current mediates steep synaptic amplification (Hsu et al 2018)
  40. CA1 pyramidal neuron: rebound spiking (Ascoli et al.2010)
  41. Ca1 pyramidal neuron: reduction model (Marasco et al. 2012)
  42. CA1 pyramidal neuron: schizophrenic behavior (Migliore et al. 2011)
  43. CA1 pyramidal neurons: effect of external electric field from power lines (Cavarretta et al. 2014)
  44. CA1 pyramidal neurons: effects of a Kv7.2 mutation (Miceli et al. 2009)
  45. CA1 pyramidal neurons: effects of Alzheimer (Culmone and Migliore 2012)
  46. CA1 pyramidal neurons: effects of Kv7 (M-) channels on synaptic integration (Shah et al. 2011)
  47. CA1 pyramidal populations after high frequency head impacts (Chapman, et al., 2023)
  48. CA1 pyramidal: Stochastic amplification of KCa in Ca2+ microdomains (Stanley et al. 2011)
  49. CA1 SOM+ (OLM) hippocampal interneuron (Ferguson et al. 2015)
  50. CA1 stratum radiatum interneuron multicompartmental model (Katona et al. 2011)
  51. CA3 hippocampal pyramidal neuron with voltage-clamp intrinsic conductance data (Traub et al 1991)
  52. CA3 pyramidal neuron (Safiulina et al. 2010)
  53. Ca3 pyramidal neuron: membrane response near rest (Hemond et al. 2009)
  54. CA3 Radiatum/Lacunosum-Moleculare interneuron, Ih (Anderson et al. 2011)
  55. Calcium waves and mGluR-dependent synaptic plasticity in CA1 pyr. neurons (Ashhad & Narayanan 2013)
  56. Cellular classes revealed by heartbeat-related modulation of extracellular APs (Mosher et al 2020)
  57. Channel density variability among CA1 neurons (Migliore et al. 2018)
  58. Chirp stimulus responses in a morphologically realistic model (Narayanan and Johnston, 2007)
  59. Cholinergic Modulation Shifts the Response of CA1 Pyramidal Cells to Depolarizing Ramps via TRPM4 Channels with Potential Implications for Place Cell Firing (Combe et al., 2023)
  60. Circadian rhythmicity shapes astrocyte morphology and neuronal function in CA1 (McCauley et al 2020)
  61. Cl- homeostasis in immature hippocampal CA3 neurons (Kolbaev et al 2020)
  62. Compartmental differences in cAMP signaling pathways in hippocam. CA1 pyr. cells (Luczak et al 2017)
  63. Computational analysis of NN activity and spatial reach of sharp wave-ripples (Canakci et al 2017)
  64. Computational modeling of gephyrin-dependent inhibitory transsynaptic signaling (Lupascu et al 2020)
  65. Computational neuropharmacology of CA1 pyramidal neuron (Ferrante et al. 2008)
  66. CRH modulates excitatory transmission and network physiology in hippocampus (Gunn et al. 2017)
  67. Decoding movement trajectory from simulated grid cell population activity (Bush & Burgess 2019)
  68. Dendritic mechanisms underlying the formation of a Place Cell (Mazzara et al. 2023)
  69. Detailed passive cable model of Dentate Gyrus Basket Cells (Norenberg et al. 2010)
  70. Different responses of mice and rats hippocampus CA1 pyramidal neurons to in vitro and in vivo-like inputs (vitale et al., 2023)
  71. Discrimination on behavioral time-scales mediated by reaction-diffusion in dendrites (Bhalla 2017)
  72. Disentangling astroglial physiology with a realistic cell model in silico (Savtchenko et al 2018)
  73. Distance-dependent synaptic strength in CA1 pyramidal neurons (Menon et al. 2013)
  74. Distinct current modules shape cellular dynamics in model neurons (Alturki et al 2016)
  75. Dynamical assessment of ion channels during in vivo-like states (Guet-McCreight & Skinner 2020)
  76. Dynamics of ERK signaling pathways during L-LTP induction(Miningou et al 2021)
  77. Early-onset epileptic encephalopathy (Miceli et al. 2015)
  78. Effect of polysynaptic facilitaiton between piriform-hippocampal network stages (Trieu et al 2015)
  79. Effect of the initial synaptic state on the probability to induce LTP and LTD (Migliore et al. 2015)
  80. Effects of electric fields on cognitive functions (Migliore et al 2016)
  81. Encoding and retrieval in a model of the hippocampal CA1 microcircuit (Cutsuridis et al. 2009)
  82. Evaluation of passive component of propagating AP in mossy fiber axons (Ohura & Kamiya 2018)
  83. Evolving simple models of diverse dynamics in hippocampal neuron types (Venkadesh et al 2018)
  84. Factors contribution to GDP-induced [Cl-]i transients (Lombardi et al 2019)
  85. Fast Spiking Basket cells (Tzilivaki et al 2019)
  86. Feedforward heteroassociative network with HH dynamics (Lytton 1998)
  87. Feedforward inhibition in pyramidal cells (Ferrante & Ascoli 2015)
  88. Firing patterns of CA3 hippocampal neurons (Soldado-Magraner et al. 2019)
  89. Fixed point attractor (Hasselmo et al 1995)
  90. Fully continuous Pinsky-Rinzel model for bifurcation analysis (Atherton et al. 2016)
  91. Gamma and theta rythms in biophysical models of hippocampus circuits (Kopell et al. 2011)
  92. Gamma oscillations in hippocampal interneuron networks (Bartos et al 2002)
  93. Gamma oscillations in hippocampal interneuron networks (Wang, Buzsaki 1996)
  94. Glial voltage dynamics driven by Kir & K2P currents (Janjic et al 2023)
  95. Grid cells from place cells (Castro & Aguiar, 2014)
  96. Healthy and Epileptic Hippocampal Circuit (Aussel et al 2022)
  97. Hierarchical anti-Hebbian network model for the formation of spatial cells in 3D (Soman et al 2019)
  98. High frequency oscillations in a hippocampal computational model (Stacey et al. 2009)
  99. Hippocampal CA1 microcircuit model including somatic and dendritic inhibition (Bilash et al, 2023)
  100. Hippocampal CA1 NN with spontaneous theta, gamma: full scale & network clamp (Bezaire et al 2016)
  101. Hippocampal CA1 pyramidal cell demonstrating dynamic mode switching (Berteau & Bullock 2020)
  102. Hippocampal CA3 network and circadian regulation (Stanley et al. 2013)
  103. Hippocampal CA3 thorny and a-thorny principal neuron models (Linaro et al in review)
  104. Hippocampal Mossy Fiber bouton: presynaptic KV7 channel function (Martinello et al 2019)
  105. Hippocampal O-LM interneurons and hippocampo-septal neurons with simplified and detailed biophysics (Takács et al, 2024)
  106. Hippocampal spiking model for context dependent behavior (Raudies & Hasselmo 2014)
  107. Hippocampal synaptic plasticity in Alzheimer's disease (Dainauskas et al., 2023)
  108. Hippocampus CA1 Interneuron Specific 3 (IS3) in vivo-like virtual NN simulations (Luo et al 2020)
  109. Hippocampus CA1 OLM cell multicompartment conductance-based model (Sun et al. 2023)
  110. Hippocampus CA1 pyramidal model with Na channel exhibiting slow inactivation (Menon et al. 2009)
  111. Hippocampus temporo-septal engram shift model (Lytton 1999)
  112. Homeostatic mechanisms may shape oscillatory modulations (Peterson & Voytek 2020)
  113. Ih tunes oscillations in an In Silico CA3 model (Neymotin et al. 2013)
  114. Impact of dendritic atrophy on intrinsic and synaptic excitability (Narayanan & Chattarji, 2010)
  115. In silico hippocampal modeling for multi-target pharmacotherapy in schizophrenia (Sherif et al 2020)
  116. Inhibition of bAPs and Ca2+ spikes in a multi-compartment pyramidal neuron model (Wilmes et al 2016)
  117. Interneuron Specific 3 Interneuron Model (Guet-McCreight et al, 2016)
  118. Interplay between somatic and dendritic inhibition promotes place fields (Pedrosa & Clopath 2020)
  119. Ketamine disrupts theta modulation of gamma in a computer model of hippocampus (Neymotin et al 2011)
  120. LCN-HippoModel: model of CA1 PCs deep-superficial theta firing dynamics (Navas-Olive et al 2020)
  121. Library of biophysically detailed striatal projection neurons (Lindroos and Hellgren Kotaleski 2020)
  122. Locus Coeruleus blocking model (Chowdhury et al.)
  123. Logarithmic distributions prove that intrinsic learning is Hebbian (Scheler 2017)
  124. Long-Term Inactivation of Na+ Channels as a Mech of Adaptation in CA1 Pyr Cells (Upchurch et al '22)
  125. Mathematical model of behavioral time scale plasticity (BTSP) of place fields (Shouval & Cone 2021)
  126. Mean-field systems and small scale neural networks (Ferguson et al. 2015)
  127. Mechanisms of very fast oscillations in axon networks coupled by gap junctions (Munro, Borgers 2010)
  128. Membrane electrical properties of mouse CA1 pyramidal cells during strong inputs (Bianchi et al 22)
  129. Model of a BDNF feedback loop (Zhang et al 2016)
  130. Model of CA1 activity during working memory task (Spera et al. 2016)
  131. Model of the hippocampus over the sleep-wake cycle using Hodgkin-Huxley neurons (Aussel et al 2018)
  132. Modeling realistic synaptic inputs of CA1 hippocampal pyramidal neurons and interneurons via Adaptive Generalized Leaky Integrate-and-Fire models (Marascoa et al., 2024)
  133. Modelling reduced excitability in aged CA1 neurons as a Ca-dependent process (Markaki et al. 2005)
  134. Modular grid cell responses as a basis for hippocampal remapping (Monaco and Abbott 2011)
  135. Modulation of septo-hippocampal theta activity by GABAA receptors (Hajos et al. 2004)
  136. Multistability of clustered states in a globally inhibitory network (Chandrasekaran et al. 2009)
  137. Network recruitment to coherent oscillations in a hippocampal model (Stacey et al. 2011)
  138. Normal ripples, abnormal ripples, and fast ripples in a hippocampal model (Fink et al. 2015)
  139. Odor supported place cell model and goal navigation in rodents (Kulvicius et al. 2008)
  140. Opposing roles for Na+/Ca2+ exchange and Ca2+-activated K+ currents during STDP (O`Halloran 2020)
  141. Parvalbumin-positive basket cells differentiate among hippocampal pyramidal cells (Lee et al. 2014)
  142. Persistent Interruption in Parvalbumin-Positive Inhibitory Interneurons: Biophysical and Mathematical Mechanisms (Upchurch et al., 2024)
  143. Phase precession through acceleration of local theta rhythm (Castro & Aguiar 2011)
  144. PKMZ synthesis and AMPAR regulation in late long-term synaptic potentiation (Helfer & Shultz 2018)
  145. Place and grid cells in a loop (Rennó-Costa & Tort 2017)
  146. Realistic amplifier model (Oláh et al. 2021)
  147. Reduced-morphology model of CA1 pyramidal cells optimized + validated w/ HippoUnit (Tomko et al '21)
  148. Region-specific atrophy in dendrites (Narayanan, Narayan, Chattarji, 2005)
  149. Resonance properties through Chirp stimulus responses (Narayanan Johnston 2007, 2008)
  150. Role for short term plasticity and OLM cells in containing spread of excitation (Hummos et al 2014)
  151. Roles of I(A) and morphology in AP prop. in CA1 pyramidal cell dendrites (Acker and White 2007)
  152. Scaffold model of mouse CA1 hippocampus. (Gandolfi et al 2022)
  153. Sensory feedback in an oscillatory interference model of place cell activity (Monaco et al. 2011)
  154. Sequential neuromodulation of Hebbian plasticity in reward-based navigation (Brzosko et al 2017)
  155. SHOT-CA3, RO-CA1 Training, & Simulation CODE in models of hippocampal replay (Nicola & Clopath 2019)
  156. Small world networks of Type I and Type II Excitable Neurons (Bogaard et al. 2009)
  157. Spatial constrains of GABAergic rheobase shift (Lombardi et al., 2021)
  158. Spatial coupling tunes NMDA receptor responses via Ca2+ diffusion (Iacobucci and Popescu 2019)
  159. Spatial summation of excitatory and inhibitory inputs in pyramidal neurons (Hao et al. 2010)
  160. Spine head calcium in a CA1 pyramidal cell model (Graham et al. 2014)
  161. Spontaneous calcium oscillations in single astrocytes (Riera et al. 2011) (Manninen et al 2017)
  162. STDP and BDNF in CA1 spines (Solinas et al. 2019)
  163. Subiculum network model with dynamic chloride/potassium homeostasis (Buchin et al 2016)
  164. Subthreshold conductances regulate theta-frequency LFPs and spike phase (Sinha and Narayanan, 2015)
  165. Synaptic plasticity for hippocampal place field formation and dynamics (Savelli 2024)
  166. Synaptic vesicle fusion model (Church et al 2021)
  167. Synchronization in a realistic model of CA1 pyramidal neurons (Fiasconaro and Migliore 2024)
  168. The APP in C-terminal domain alters CA1 neuron firing (Pousinha et al 2019)
  169. The electrodiffusive neuron-extracellular-glia (edNEG) model (Sætra et al. 2021)
  170. The electrodiffusive Pinsky-Rinzel (edPR) model (Sætra et al., 2020)
  171. Theta-gamma phase amplitude coupling in a hippocampal CA1 microcircuit (Ponzi et al. 2023)
  172. Using Strahler's analysis to reduce realistic models (Marasco et al, 2013)
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