Model Type: Realistic Network

  1. 2D model of olfactory bulb gamma oscillations (Li and Cleland 2017)
  2. 3D model of the olfactory bulb (Migliore et al. 2014)
  3. 3D olfactory bulb: operators (Migliore et al, 2015)
  4. 5-neuron-model of neocortex for producing realistic extracellular AP shapes (Van Dijck et al. 2012)
  5. A 1000 cell network model for Lateral Amygdala (Kim et al. 2013)
  6. A biophysical model of thalamocortical network switching under propofol (Soplata et al., 2023)
  7. A cerebellar model of phase-locked tACS for essential tremor (Schreglmann et al., 2021)
  8. A computational model of action selection in the basal ganglia (Suryanarayana et al 2019)
  9. A computational model of oxytocin modulation of olfactory recognition memory (Linster & Kelsch 2019)
  10. A computational model of single-neuron perturbations (Sadeh and Clopath 2020)
  11. A contracting model of the basal ganglia (Girard et al. 2008)
  12. A cortico-cerebello-thalamo-cortical loop model under essential tremor (Zhang & Santaniello 2019)
  13. A detailed and fast model of extracellular recordings (Camunas-Mesa & Qurioga 2013)
  14. A detailed data-driven network model of prefrontal cortex (Hass et al 2016)
  15. A focal seizure model with ion concentration changes (Gentiletti et al., 2022)
  16. A full-scale cortical microcircuit spiking network model (Shimoura et al 2018)
  17. A gap junction network of Amacrine Cells controls Nitric Oxide release (Jacoby et al 2018)
  18. A large-scale model of the functioning brain (spaun) (Eliasmith et al. 2012)
  19. A microcircuit model of the frontal eye fields (Heinzle et al. 2007)
  20. A Model Circuit of Thalamocortical Convergence (Behuret et al. 2013)
  21. A model for focal seizure onset, propagation, evolution, and progression (Liou et al 2020)
  22. A model of antennal lobe of bee (Chen JY et al. 2015)
  23. A model of ASIC1a and synaptic cleft pH modulating wind-up in wide dynamic range neurons (Delrocq)
  24. A model of the femur-tibia control system in stick insects (Stein et al. 2008)
  25. A model of the temporal pattern generator of C. elegans egg-laying behavior (Zhang et. al 2010)
  26. A model of working memory for encoding multiple items (Ursino et al, in press)
  27. A Moth MGC Model-A HH network with quantitative rate reduction (Buckley & Nowotny 2011)
  28. A multilayer cortical model to study seizure propagation across microdomains (Basu et al. 2015)
  29. A network model of tail withdrawal in Aplysia (White et al 1993)
  30. A network model of the vertebrate retina (Publio et al. 2009)
  31. A network of AOB mitral cells that produces infra-slow bursting (Zylbertal et al. 2017)
  32. A simulation method for the firing sequences of motor units (Jiang et al 2006)
  33. A single column thalamocortical network model (Traub et al 2005)
  34. A spatial model of the intermediate superior colliculus (Moren et. al. 2013)
  35. A spiking model of cortical broadcast and competition (Shanahan 2008)
  36. A spiking neural network model of model-free reinforcement learning (Nakano et al 2015)
  37. A spiking neural network model of the Lateral Geniculate Nucleus (Sen-Bhattacharya et al 2017)
  38. A spiking NN for amplification of feature-selectivity with specific connectivity (Sadeh et al 2015)
  39. A two networks model of connectivity-dependent oscillatory activity (Avella OJ et al. 2014)
  40. A two-layer biophysical olfactory bulb model of cholinergic neuromodulation (Li and Cleland 2013)
  41. A unified thalamic model of multiple distinct oscillations (Li, Henriquez and Fröhlich 2017)
  42. Acetylcholine-modulated plasticity in reward-driven navigation (Zannone et al 2018)
  43. ACh modulation in olfactory bulb and piriform cortex (de Almeida et al. 2013;Devore S, et al. 2014)
  44. ACnet23 primary auditory cortex model (Beeman et al 2019)
  45. Activity constraints on stable neuronal or network parameters (Olypher and Calabrese 2007)
  46. Activity patterns in a subthalamopallidal network of the basal ganglia model (Terman et al 2002)
  47. Adaptive robotic control driven by a versatile spiking cerebellar network (Casellato et al. 2014)
  48. Alpha rhythm in vitro visual cortex (Traub et al 2020)
  49. An attractor network model of grid cells and theta-nested gamma oscillations (Pastoll et al 2013)
  50. An electrophysiological model of GABAergic double bouquet cells (Chrysanthidis et al. 2019)
  51. Asynchronous irregular and up/down states in excitatory and inhibitory NNs (Destexhe 2009)
  52. Auditory cortex layer IV network model (Beeman 2013)
  53. Axonal gap junctions produce fast oscillations in cerebellar Purkinje cells (Traub et al. 2008)
  54. Basal ganglia network model of subthalamic deep brain stimulation (Hahn and McIntyre 2010)
  55. Basal ganglia-thalamic network model for deep brain stimulation (So et al. 2012)
  56. Basis for temporal filters in the cerebellar granular layer (Roessert et al. 2015)
  57. Biologically Constrained Basal Ganglia model (BCBG model) (Lienard, Girard 2014)
  58. Biophysical model for field potentials of networks of I&F neurons (beim Graben & Serafim 2013)
  59. Biophysically Realistic Network Model of the Wild-Type and Degenerate Retina (Ly et al 2022)
  60. Biophysically realistic neural modeling of the MEG mu rhythm (Jones et al. 2009)
  61. Broadening of activity with flow across neural structures (Lytton et al. 2008)
  62. Burst induced synaptic plasticity in Apysia sensorimotor neurons (Phares et al 2003)
  63. Bursting and oscillations in RD1 Retina driven by AII Amacrine Neuron (Choi et al. 2014)
  64. Bursting respiratory net: clustered architecture gives large phase diff`s (Fietkiewicz et al 2011)
  65. Ca+/HCN channel-dependent persistent activity in multiscale model of neocortex (Neymotin et al 2016)
  66. CA1 network model for place cell dynamics (Turi et al 2019)
  67. CA1 network model: interneuron contributions to epileptic deficits (Shuman et al 2020)
  68. CA1 pyr cell: Inhibitory modulation of spatial selectivity+phase precession (Grienberger et al 2017)
  69. CA1 pyramidal cell: reconstructed axonal arbor and failures at weak gap junctions (Vladimirov 2011)
  70. CA1 pyramidal cells, basket cells, ripples (Malerba et al 2016)
  71. CA1 pyramidal neuron network model (Ferguson et al 2015)
  72. Ca2+-activated I_CAN and synaptic depression promotes network-dependent oscil. (Rubin et al. 2009)
  73. CA3 Network Model of Epileptic Activity (Sanjay et. al, 2015)
  74. Cancelling redundant input in ELL pyramidal cells (Bol et al. 2011)
  75. Cell splitting in neural networks extends strong scaling (Hines et al. 2008)
  76. Cerebellar cortex oscil. robustness from Golgi cell gap jncs (Simoes de Souza and De Schutter 2011)
  77. Cerebellar gain and timing control model (Yamazaki & Tanaka 2007)(Yamazaki & Nagao 2012)
  78. Cerebellar granular layer (Maex and De Schutter 1998)
  79. Cerebellar Model for the Optokinetic Response (Kim and Lim 2021)
  80. Cerebellar-thalamo-cortical brain network for sensorimotor communication (Romano et al., 2025)
  81. Changes of ionic concentrations during seizure transitions (Gentiletti et al. 2016)
  82. Cholinergic modulation of resting state networks (Sanda et al., 2024)
  83. Classic model of the Tritonia Swim CPG (Getting, 1989)
  84. Coding of stimulus frequency by latency in thalamic networks (Golomb et al 2005)
  85. Collection of simulated data from a thalamocortical network model (Glabska, Chintaluri, Wojcik 2017)
  86. Competing oscillator 5-cell circuit and Parameterscape plotting (Gutierrez et al. 2013)
  87. Competition for AP initiation sites in a circuit controlling simple learning (Cruz et al. 2007)
  88. Competition model of pheromone ratio detection (Zavada et al. 2011)
  89. Complex dynamics: reproducing Golgi cell electroresponsiveness (Geminiani et al 2018, 2019ab)
  90. Composite spiking network/neural field model of Parkinsons (Kerr et al 2013)
  91. Computational analysis of NN activity and spatial reach of sharp wave-ripples (Canakci et al 2017)
  92. Computational aspects of feedback in neural circuits (Maass et al 2006)
  93. Computational Model of a Central Pattern Generator (Cataldo et al 2006)
  94. Computational model of the distributed representation of operant reward memory (Costa et al. 2020)
  95. Computational Surgery (Lytton et al. 2011)
  96. Computer model of clonazepam's effect in thalamic slice (Lytton 1997)
  97. Computing with neural synchrony (Brette 2012)
  98. Conductance-based model of Layer-4 in the barrel cortex (Argaman et Golomb 2017)
  99. Contribution of ATP-sensitive potassium channels in the neuronal network (Huang et al. 2009)
  100. Convergence regulates synchronization-dependent AP transfer in feedforward NNs (Sailamul et al 2017)
  101. Core respiratory network organization: Insights from optogenetics and modeling (Ausborn et al 2018)
  102. COREM: configurable retina simulator (Martínez-Cañada et al., 2016)
  103. Cortex-Basal Ganglia-Thalamus network model (Kumaravelu et al. 2016)
  104. Cortical Basal Ganglia Network Model during Closed-loop DBS (Fleming et al 2020)
  105. Cortical feedback alters visual response properties of dLGN relay cells (Martínez-Cañada et al 2018)
  106. Cortical Interneuron & Pyramidal Cell Model of Cortical Spreading Depression (Stein & Harris 2022)
  107. Cortical model with reinforcement learning drives realistic virtual arm (Dura-Bernal et al 2015)
  108. Cortical oscillations and the basal ganglia (Fountas & Shanahan 2017)
  109. Current Dipole in Laminar Neocortex (Lee et al. 2013)
  110. Data-driven multiscale model of macaque auditory thalamocortical circuits reproduces in vivo dynamics (Dura-Bernal et al., 2023)
  111. Decoding movement trajectory from simulated grid cell population activity (Bush & Burgess 2019)
  112. Deconstruction of cortical evoked potentials generated by subthalamic DBS (Kumaravelu et al 2018)
  113. Decorrelation in the developing visual thalamus (Tikidji-Hamburyan et al, 2023)
  114. Default mode network model (Matsui et al 2014)
  115. Dentate gyrus (Morgan et al. 2007, 2008, Santhakumar et al. 2005, Dyhrfjeld-Johnsen et al. 2007)
  116. Dentate Gyrus Feed-forward inhibition (Ferrante et al. 2009)
  117. Dentate Gyrus model including Granule cells with dendritic compartments (Chavlis et al 2017)
  118. Dentate gyrus network model (Santhakumar et al 2005)
  119. Dentate gyrus network model (Tejada et al 2014)
  120. Dentate gyrus network model pattern separation and granule cell scaling in epilepsy (Yim et al 2015)
  121. Development and Binocular Matching of Orientation Selectivity in Visual Cortex (Xu et al 2020)
  122. Development of orientation-selective simple cell receptive fields (Rishikesh and Venkatesh, 2003)
  123. Different roles for inhibition in the rhythm-generating respiratory network (Harris et al 2017)
  124. Diffusive homeostasis in a spiking network model (Sweeney et al. 2015)
  125. Disrupted information processing in Fmr1-KO mouse layer 4 barrel cortex (Domanski et al 2019)
  126. Distal inhibitory control of sensory-evoked excitation (Egger, Schmitt et al. 2015)
  127. Distance-dependent inhibition in the hippocampus (Strüber et al. 2017)
  128. Distributed cerebellar plasticity implements adaptable gain control (Garrido et al., 2013)
  129. Distributed representation of perceptual categories in the auditory cortex (Kim and Bao 2008)
  130. Distributed synaptic plasticity and spike timing (Garrido et al. 2013)
  131. Distributed working memory in large-scale macaque brain model (Mejias and Wang, 2022)
  132. Duration-tuned neurons from the inferior colliculus of the big brown bat (Aubie et al. 2009)
  133. Duration-tuned neurons from the inferior colliculus of vertebrates (Aubie et al. 2012)
  134. Dynamic cortical interlaminar interactions (Carracedo et al. 2013)
  135. Dynamic dopamine modulation in the basal ganglia: Learning in Parkinson (Frank et al 2004,2005)
  136. Dynamical patterns underlying response properties of cortical circuits (Keane et al 2018)
  137. Dynamics in random NNs with multiple neuron subtypes (Pena et al 2018, Tomov et al 2014, 2016)
  138. Dynamics of sleep oscillations coupled to brain temperature on multiple scales (Csernai et al 2019)
  139. Effect of polysynaptic facilitaiton between piriform-hippocampal network stages (Trieu et al 2015)
  140. Effects of Guanfacine and Phenylephrine on a model of working memory (Duggins et al 2017)
  141. Effects of increasing CREB on storage and recall processes in a CA1 network (Bianchi et al. 2014)
  142. Effects of spinal cord stimulation on WDR dorsal horn network (Zhang et al 2014)
  143. Efficient simulation environment for modeling large-scale cortical processing (Richert et al. 2011)
  144. Electrically-coupled Retzius neurons (Vazquez et al. 2009)
  145. Electrodecrements in in vitro model of infantile spasms (Traub et al 2020)
  146. Electrostimulation to reduce synaptic scaling driven progression of Alzheimers (Rowan et al. 2014)
  147. ELL pyramidal neuron (Simmonds and Chacron 2014)
  148. Emergence of Connectivity Motifs in Networks of Model Neurons (Vasilaki, Giugliano 2014)
  149. Emergence of physiological oscillation frequencies in neocortex simulations (Neymotin et al. 2011)
  150. Emergence of spatiotemporal sequences in spiking neuronal networks (Spreizer et al 2019)
  151. Encoding and retrieval in a model of the hippocampal CA1 microcircuit (Cutsuridis et al. 2009)
  152. Engaging distinct oscillatory neocortical circuits (Vierling-Claassen et al. 2010)
  153. Epilepsy may be caused by very small functional changes in ion channels (Thomas et al. 2009)
  154. Epileptic seizure model with Morris-Lecar neurons (Beverlin and Netoff 2011)
  155. Escape response latency in the Giant Fiber System of Drosophila melanogastor (Augustin et al 2019)
  156. Event-related simulation of neural processing in complex visual scenes (Mihalas et al. 2011)
  157. Excitatory and inhibitory interactions in populations of model neurons (Wilson and Cowan 1972)
  158. Excitatory and inhibitory population activity (Bittner et al 2017) (Litwin-Kumar & Doiron 2017)
  159. Excitotoxic loss of dopaminergic cells in PD (Muddapu et al 2019)
  160. Explainable AI for spatial navigation based on hippocampal circuitry (Coppolino + Migliore 2023)
  161. Exploring the role of Kӧlliker-Fuse nucleus in breathing variability via mathematical modeling (John et al., 2023)
  162. Failure of Deep Brain Stimulation in a basal ganglia neuronal network model (Dovzhenok et al. 2013)
  163. Fast convergence of cerebellar learning (Luque et al. 2015)
  164. Fast global oscillations in networks of I&F neurons with low firing rates (Brunel and Hakim 1999)
  165. Fast oscillations in inhibitory networks (Maex, De Schutter 2003)
  166. Feedforward heteroassociative network with HH dynamics (Lytton 1998)
  167. First-Spike-Based Visual Categorization Using Reward-Modulated STDP (Mozafari et al. 2018)
  168. Fixed point attractor (Hasselmo et al 1995)
  169. FNS spiking neural simulator; LIFL neuron model, event-driven simulation (Susi et al 2021)
  170. Formation of synfire chains (Jun and Jin 2007)
  171. FRAT: An amygdala-centered model of fear conditioning (Krasne et al. 2011)
  172. Frequency-dependent pattern separation in a biophysical model of the dentate gyrus, (Singh et al., 2023)
  173. Fronto-parietal visuospatial WM model with HH cells (Edin et al 2007)
  174. Fully-Asynchronous Cache-Efficient Simulation of Detailed Neural Networks (Magalhaes et al 2019)
  175. Functional balanced networks with synaptic plasticity (Sadeh et al, 2015)
  176. Functional consequences of cortical circuit abnormalities on gamma in schizophrenia (Spencer 2009)
  177. Functional properties of dendritic gap junctions in Cerebellar Golgi cells (Szoboszlay et al. 2016)
  178. Gamma and theta rythms in biophysical models of hippocampus circuits (Kopell et al. 2011)
  179. Gamma genesis in the basolateral amygdala (Feng et al 2019)
  180. Gamma oscillations in hippocampal interneuron networks (Bartos et al 2002)
  181. Gamma oscillations in hippocampal interneuron networks (Wang, Buzsaki 1996)
  182. Gamma-beta alternation in the olfactory bulb (David, Fourcaud-Trocmé et al., 2015)
  183. Gap junction coupled network of striatal fast spiking interneurons (Hjorth et al. 2009)
  184. Gap junction plasticity as a mechanism to regulate network-wide oscillations (Pernelle et al 2018)
  185. Gap-junction coupled network activity depends on coupled dendrites diameter (Gansert et al. 2007)
  186. Gating of steering signals through phasic modulation of reticulospinal neurons (Kozlov et al. 2014)
  187. Generating coherent patterns of activity from chaotic neural networks (Sussillo and Abbott 2009)
  188. Generating oscillatory bursts from a network of regular spiking neurons (Shao et al. 2009)
  189. GLMCC validation neural network model (Kobayashi et al. 2019)
  190. Graph-theoretical Derivation of Brain Structural Connectivity (Giacopelli et al 2020)
  191. Grid cell oscillatory interference with noisy network oscillators (Zilli and Hasselmo 2010)
  192. Grid cell spatial firing models (Zilli 2012)
  193. Grid cells from place cells (Castro & Aguiar, 2014)
  194. Growth Rules for Repair of Asynch Irregular Networks after Peripheral Lesions (Sinha et al 2021)
  195. H-currents effect on the fluctuation of gamma/beta oscillations (Avella-Gonzalez et al., 2015)
  196. Half-center oscillator database of leech heart interneuron model (Doloc-Mihu & Calabrese 2011)
  197. Healthy and Epileptic Hippocampal Circuit (Aussel et al 2022)
  198. Hierarchical network model of perceptual decision making (Wimmer et al 2015)
  199. High dimensional dynamics and low dimensional readouts in neural microcircuits (Haeusler et al 2006)
  200. High frequency oscillations in a hippocampal computational model (Stacey et al. 2009)
  201. High frequency stimulation of the Subthalamic Nucleus (Rubin and Terman 2004)
  202. Hippocampal basket cell gap junction network dynamics (Saraga et al. 2006)
  203. Hippocampal CA1 NN with spontaneous theta, gamma: full scale & network clamp (Bezaire et al 2016)
  204. Hippocampal CA3 network and circadian regulation (Stanley et al. 2013)
  205. Hippocampal spiking model for context dependent behavior (Raudies & Hasselmo 2014)
  206. Hippocampus temporo-septal engram shift model (Lytton 1999)
  207. Homeostatic mechanisms may shape oscillatory modulations (Peterson & Voytek 2020)
  208. Homosynaptic plasticity in the tail withdrawal circuit (TWC) of Aplysia (Baxter and Byrne 2006)
  209. Hopfield and Brody model (Hopfield, Brody 2000)
  210. Hopfield and Brody model (Hopfield, Brody 2000) (NEURON+python)
  211. Human Attentional Networks: A Connectionist Model (Wang and Fan 2007)
  212. Human L5 Cortical Circuit (Guet-McCreight et al, 2023)
  213. Human layer 2/3 cortical microcircuits in health and depression (Yao et al, 2022)
  214. Human sleep/wake cycle (Rempe et al. 2010)
  215. Human tactile FA1 neurons (Hay and Pruszynski 2020)
  216. Huntington`s disease model (Gambazzi et al. 2010)
  217. Hybrid oscillatory interference / continuous attractor NN of grid cell firing (Bush & Burgess 2014)
  218. Hyperconnectivity, slow synapses in PFC mental retardation and autism model (Testa-Silva et al 2011)
  219. I&F recurrent networks with current- or conductance-based synapses (Cavallari et al. 2014)
  220. Ih tunes oscillations in an In Silico CA3 model (Neymotin et al. 2013)
  221. In silico hippocampal modeling for multi-target pharmacotherapy in schizophrenia (Sherif et al 2020)
  222. Inferior Olive, subthreshold oscillations (Torben-Nielsen, Segev, Yarom 2012)
  223. Information-processing in lamina-specific cortical microcircuits (Haeusler and Maass 2006)
  224. Inhibition and glial-K+ interaction leads to diverse seizure transition modes (Ho & Truccolo 2016)
  225. Inhibition perturbations reveals dynamical structure of neural processing (Sadeh & Clopath 2020)
  226. Inhibitory cells enable sparse coding in V1 model (King et al. 2013)
  227. Inhibitory control by an integral feedback signal in prefrontal cortex (Miller and Wang 2006)
  228. Inhibitory neuron plasticity as a mechanism for ocular dominance plasticity (Bono & Clopath 2019)
  229. Inner retina; pathological retina spontaneous oscillation (Horie et al, 2025)
  230. Interaction of leak and IMI conductance on the STG over broad temperature range (Stadele et al 2015)
  231. Interaural time difference detection by slowly integrating neurons (Vasilkov Tikidji-Hamburyan 2012)
  232. Investigation of different targets in deep brain stimulation for Parkinson`s (Pirini et al. 2009)
  233. Irregular spiking in NMDA-driven prefrontal cortex neurons (Durstewitz and Gabriel 2006)
  234. JitCon: Just in time connectivity for large spiking networks (Lytton et al. 2008)
  235. Ketamine disrupts theta modulation of gamma in a computer model of hippocampus (Neymotin et al 2011)
  236. KInNeSS : a modular framework for computational neuroscience (Versace et al. 2008)
  237. Knox implementation of Destexhe 1998 spike and wave oscillation model (Knox et al 2018)
  238. L4 cortical barrel NN model receiving thalamic input during whisking or touch (Gutnisky et al. 2017)
  239. Laminar analysis of excitatory circuits in vibrissal motor and sensory cortex (Hooks et al. 2011)
  240. Laminar connectivity matrix simulation (Weiler et al 2008)
  241. Large cortex model with map-based neurons (Rulkov et al 2004)
  242. Large scale model of the olfactory bulb (Yu et al., 2013)
  243. Large scale neocortical model for PGENESIS (Crone et al 2019)
  244. Large-scale model of neocortical slice in vitro exhibiting persistent gamma (Tomsett et al. 2014)
  245. Large-scale neural model of visual short-term memory (Ulloa, Horwitz 2016; Horwitz, et al. 2005,...)
  246. Large-scale neuromusculoskeletal model of human upright standing (Elias et al 2014)
  247. Late emergence of the whisker direction selectivity map in rat barrel cortex (Kremer et al. 2011)
  248. Lateral dendrodenditic inhibition in the Olfactory Bulb (David et al. 2008)
  249. Lateral entorhinal cortex network model (Traub and Whittington, in press)
  250. Learning spatial transformations through STDP (Davison, Frégnac 2006)
  251. Leech Heart (HE) Motor Neuron conductances contributions to NN activity (Lamb & Calabrese 2013)
  252. Leech Heart Interneuron model (Sharma et al 2020)
  253. Leech heart interneuron network model (Hill et al 2001, 2002)
  254. Levodopa-Induced Toxicity in Parkinson's Disease (Muddapu et al, 2022)
  255. LFP signature of monosynaptic thalamocortical connection (Hagen et al 2017)
  256. LGNcircuit: Minimal LGN network model of temporal processing of visual input (Norheim et al. 2012)
  257. Linking dynamics of the inhibitory network to the input structure (Komarov & Bazhenov 2016)
  258. Linking STDP and Dopamine action to solve the distal reward problem (Izhikevich 2007)
  259. LIP and FEF rhythmic attention model (Aussel et al. 2023)
  260. Lobster STG pyloric network model with calcium sensor (Gunay & Prinz 2010) (Prinz et al. 2004)
  261. Locust olfactory network with GGN and full KC population in the mushroom body (Ray et al 2020)
  262. Logarithmic distributions prove that intrinsic learning is Hebbian (Scheler 2017)
  263. Long time windows from theta modulated inhib. in entorhinal–hippo. loop (Cutsuridis & Poirazi 2015)
  264. Loss of phase-locking in non-weakly coupled inhib. networks of type-I neurons (Oh and Matveev 2009)
  265. Maximum entropy model to predict spatiotemporal spike patterns (Marre et al. 2009)
  266. MDD: the role of glutamate dysfunction on Cingulo-Frontal NN dynamics (Ramirez-Mahaluf et al 2017)
  267. Mean Field Equations for Two-Dimensional Integrate and Fire Models (Nicola and Campbell, 2013)
  268. Mean-field models of neural populations under electrical stimulation (Cakan & Obermayer 2020)
  269. Mechanisms for stable, robust, and adaptive development of orientation maps (Stevens et al. 2013)
  270. Mechanisms of very fast oscillations in axon networks coupled by gap junctions (Munro, Borgers 2010)
  271. Medial reticular formation of the brainstem: anatomy and dynamics (Humphries et al. 2006, 2007)
  272. MEG of Somatosensory Neocortex (Jones et al. 2007)
  273. Mesoscopic dynamics from AdEx recurrent networks (Zerlaut et al JCNS 2018)
  274. Mesoscopic dynamics from AdEx recurrent networks (Zerlaut et al JCNS 2018) (PyNN)
  275. Microcircuits of L5 thick tufted pyramidal cells (Hay & Segev 2015)
  276. Minimal model of interictal and ictal discharges “Epileptor-2” (Chizhov et al 2018)
  277. Mitral cell activity gating by respiration and inhibition in an olfactory bulb NN (Short et al 2016)
  278. Model of arrhythmias in a cardiac cells network (Casaleggio et al. 2014)
  279. Model of CA1 activity during working memory task (Spera et al. 2016)
  280. Model of dentate granule cell hyperexcitability in bipolar disorder, and the effects of lithium (Singh et al., 2025)
  281. Model of eupnea and sigh generation in respiratory network (Toporikova et al 2015)
  282. Model of long range transmission of gamma oscillation (Murray 2007)
  283. Model of memory linking through memory allocation (Kastellakis et al. 2016)
  284. Model of the cerebellar granular network (Sudhakar et al 2017)
  285. Model of working memory based on negative derivative feedback (Lim and Goldman, 2013)
  286. Modeling and MEG evidence of early consonance processing in auditory cortex (Tabas et al 2019)
  287. Modeling dendritic spikes and plasticity (Bono and Clopath 2017)
  288. Modeling epileptic seizure induced by depolarization block (Kim & Dykamp 2017)
  289. Modeling hebbian and homeostatic plasticity (Toyoizumi et al. 2014)
  290. Modeling the effects of dopamine on network synchronization (Komek et al. 2012)
  291. Modelling enteric neuron populations and muscle fed-state motor patterns (Chambers et al. 2011)
  292. Modelling platform of the cochlear nucleus and other auditory circuits (Manis & Compagnola 2018)
  293. Models for cortical UP-DOWN states in a bistable inhibitory-stabilized network (Jercog et al 2017)
  294. Models of Vector Navigation with Grid Cells (Bush et al., 2015)
  295. Modular grid cell responses as a basis for hippocampal remapping (Monaco and Abbott 2011)
  296. Modulation of hippocampal rhythms by electric fields and network topology (Berzhanskaya et al. 2013)
  297. Modulation of septo-hippocampal theta activity by GABAA receptors (Hajos et al. 2004)
  298. Motor cortex microcircuit simulation based on brain activity mapping (Chadderdon et al. 2014)
  299. Motor system model with reinforcement learning drives virtual arm (Dura-Bernal et al 2017)
  300. Multi-area layer-resolved spiking network model of resting-state dynamics in macaque visual cortex
  301. Multiplication by NMDA receptors in Direction Selective Ganglion cells (Poleg-Polsky & Diamond 2016)
  302. Multiscale model of excitotoxicity in PD (Muddapu and Chakravarthy 2020)
  303. Multiscale model of primary motor cortex circuits predicts in vivo dynamics (Dura-Bernal et al 2023)
  304. Multisensory integration in the superior colliculus: a neural network model (Ursino et al. 2009)
  305. Multistability of clustered states in a globally inhibitory network (Chandrasekaran et al. 2009)
  306. Multitarget pharmacology for Dystonia in M1 (Neymotin et al 2016)
  307. Muscle spindle feedback circuit (Moraud et al, 2016)
  308. Na channel mutations in the dentate gyrus (Thomas et al. 2009)
  309. Neocort. pyramidal cells subthreshold somatic voltage controls spike propagation (Munro Kopell 2012)
  310. NETMORPH: creates NNs with realistic neuron morphologies (Koene et al. 2009, van Ooyen et al. 2014)
  311. Network bursts in cultured NN result from different adaptive mechanisms (Masquelier & Deco 2013)
  312. Network model of the granular layer of the cerebellar cortex (Maex, De Schutter 1998)
  313. Network model with dynamic ion concentrations (Ullah et al. 2009)
  314. Network model with neocortical architecture (Anderson et al 2007,2012; Azhar et al 2012)
  315. Network models of frequency modulated sweep detection (Skorheim et al. 2014)
  316. Network models of single compartment neurons for investigating downmodulation of voltage-gated potassium channels (Ho et al., 2025)
  317. Network recruitment to coherent oscillations in a hippocampal model (Stacey et al. 2011)
  318. Network topologies for producing limited sustained activation (Kaiser and Hilgetag 2010)
  319. Networks of spiking neurons: a review of tools and strategies (Brette et al. 2007)
  320. Neural Interactome: interactive simulation of a neuronal system (Kim et al 2019)
  321. Neural mass model based on single cell dynamics to model pathophysiology (Zandt et al 2014)
  322. Neural model of frog ventilatory rhythmogenesis (Horcholle-Bossavit and Quenet 2009)
  323. Neural modeling of an internal clock (Yamazaki and Tanaka 2008)
  324. Neural transformations on spike timing information (Tripp and Eliasmith 2007)
  325. Neurogenesis in the olfactory bulb controlled by top-down input (Adams et al 2018)
  326. Neuromorphic muscle spindle model (Vannucci et al 2017)
  327. Neuron-based control mechanisms for a robotic arm and hand (Singh et al 2017)
  328. Neuronify: An Educational Simulator for Neural Circuits (Dragly et al 2017)
  329. NMDAR & GABAB/KIR Give Bistable Dendrites: Working Memory & Sequence Readout (Sanders et al., 2013)
  330. Noise promotes independent control of gamma oscillations and grid firing (Solanka et al 2015)
  331. Nonlinear dendritic processing in barrel cortex spiny stellate neurons (Lavzin et al. 2012)
  332. Normal ripples, abnormal ripples, and fast ripples in a hippocampal model (Fink et al. 2015)
  333. Norns - Neural Network Studio (Visser & Van Gils 2014)
  334. Numerical Integration of Izhikevich and HH model neurons (Stewart and Bair 2009)
  335. Olfactory bulb cluster formation (Migliore et al. 2010)
  336. Olfactory bulb juxtaglomerular models (Carey et al., 2015)
  337. Olfactory bulb microcircuits model with dual-layer inhibition (Gilra & Bhalla 2015)
  338. Olfactory bulb mitral and granule cell column formation (Migliore et al. 2007)
  339. Olfactory bulb mitral and granule cell: dendrodendritic microcircuits (Migliore and Shepherd 2008)
  340. Olfactory bulb mitral cell gap junction NN model: burst firing and synchrony (O`Connor et al. 2012)
  341. Olfactory bulb mitral cell: synchronization by gap junctions (Migliore et al 2005)
  342. Olfactory Bulb mitral-granule network generates beta oscillations (Osinski & Kay 2016)
  343. Olfactory Bulb Network (Davison et al 2003)
  344. Olfactory bulb network model of gamma oscillations (Bathellier et al. 2006; Lagier et al. 2007)
  345. Olfactory bulb network: neurogenetic restructuring and odor decorrelation (Chow et al. 2012)
  346. Olfactory Computations in Mitral-Granule cell circuits (Migliore & McTavish 2013)
  347. Optimal deep brain stimulation of the subthalamic nucleus-a computational study (Feng et al. 2007)
  348. Orientation selectivity in inhibition-dominated recurrent networks (Sadeh and Rotter, 2015)
  349. Oscillating neurons in the cochlear nucleus (Bahmer Langner 2006a, b, and 2007)
  350. Oscillations emerging from noise-driven NNs (Tchumatchenko & Clopath 2014)
  351. Oscillations, phase-of-firing coding and STDP: an efficient learning scheme (Masquelier et al. 2009)
  352. Pallidostriatal projections promote beta oscillations (Corbit, Whalen, et al 2016)
  353. Parallel network simulations with NEURON (Migliore et al 2006)
  354. Parallel odor processing by mitral and middle tufted cells in the OB (Cavarretta et al 2016, 2018)
  355. Parallelizing large networks in NEURON (Lytton et al. 2016)
  356. Parametric computation and persistent gamma in a cortical model (Chambers et al. 2012)
  357. Parvalbumin-positive basket cells differentiate among hippocampal pyramidal cells (Lee et al. 2014)
  358. Perceptual judgments via sensory-motor interaction assisted by cortical GABA (Hoshino et al 2018)
  359. Persistent synchronized bursting activity in cortical tissues (Golomb et al 2005)
  360. Perturbation sensitivity implies high noise and suggests rate coding in cortex (London et al. 2010)
  361. Phase oscillator models for lamprey central pattern generators (Varkonyi et al. 2008)
  362. Phase precession through acceleration of local theta rhythm (Castro & Aguiar 2011)
  363. Phase response theory in sparsely + strongly connected inhibitory NNs (Tikidji-Hamburyan et al 2019)
  364. Phasic ACh promotes gamma oscillations in E-I networks (Lu et al, 2020)
  365. PING, ING and CHING network models for Gamma oscillations in cortex (Susin and Destexhe 2021)
  366. PIR gamma oscillations in network of resonators (Tikidji-Hamburyan et al. 2015)
  367. Piriform cortex network model with multicompartment neurons for cell assemblies (Traub et al 2021)
  368. Polychronization: Computation With Spikes (Izhikevich 2005)
  369. Population models of temporal differentiation (Tripp and Eliasmith 2010)
  370. Population-level model of the basal ganglia and action selection (Gurney et al 2001, 2004)
  371. Potjans-Diesmann cortical microcircuit model in NetPyNE (Romaro et al 2021)
  372. pre-Bötzinger complex variability (Fietkiewicz et al. 2016)
  373. Principles of Computational Modelling in Neuroscience (Book) (Sterratt et al. 2011)
  374. Prosthetic electrostimulation for information flow repair in a neocortical simulation (Kerr 2012)
  375. Purkinje cell: Synaptic activation predicts voltage control of burst-pause (Masoli & D'Angelo 2017)
  376. Purkinje neuron network (Zang et al. 2020)
  377. Pyramidal neuron, fast, regular, and irregular spiking interneurons (Konstantoudaki et al 2014)
  378. Quantitative assessment of computational models for retinotopic map formation (Hjorth et al. 2015)
  379. Rapid desynchronization of an electrically coupled Golgi cell network (Vervaeke et al. 2010)
  380. Rate model of a cortical RS-FS-LTS network (Hayut et al. 2011)
  381. Realistic barrel cortical column - Matlab (Huang et al., 2022)
  382. Realistic barrel cortical column - NetPyNE (Huang et al., 2022)
  383. Reconstrucing sleep dynamics with data assimilation (Sedigh-Sarvestani et al., 2012)
  384. Recurrent amplification of grid-cell activity (D'Albis and Kempter 2020)
  385. Reducing variability in motor cortex activity by GABA (Hoshino et al. 2019)
  386. Regulation of a slow STG rhythm (Nadim et al 1998)
  387. Reichardt Model for Motion Detection in the Fly Visual System (Tuthill et al, 2011)
  388. Reinforcement learning of targeted movement (Chadderdon et al. 2012)
  389. Relative spike time coding and STDP-based orientation selectivity in V1 (Masquelier 2012)
  390. Respiratory central pattern generator including Kolliker-Fuse nucleus (Wittman et al 2019)
  391. Respiratory central pattern generator network in mammalian brainstem (Rubin et al. 2009)
  392. Response properties of neocort. neurons to temporally modulated noisy inputs (Koendgen et al. 2008)
  393. Reverberatory bursts propagation and synchronization in developing cultured NNs (Huang et al 2016)
  394. Reward modulated STDP (Legenstein et al. 2008)
  395. Robust Reservoir Generation by Correlation-Based Learning (Yamazaki & Tanaka 2008)
  396. Role for short term plasticity and OLM cells in containing spread of excitation (Hummos et al 2014)
  397. S cell network (Moss et al 2005)
  398. Scaffold model of mouse CA1 hippocampus. (Gandolfi et al 2022)
  399. SCN1A gain-of-function in early infantile encephalopathy (Berecki et al 2019)
  400. Self-organized olfactory pattern recognition (Kaplan & Lansner 2014)
  401. Sensitivity of noisy neurons to coincident inputs (Rossant et al. 2011)
  402. Sensorimotor cortex reinforcement learning of 2-joint virtual arm reaching (Neymotin et al. 2013)
  403. Sensory feedback in an oscillatory interference model of place cell activity (Monaco et al. 2011)
  404. Sensory-evoked responses of L5 pyramidal tract neurons (Egger et al 2020)
  405. Simulated cortical color opponent receptive fields self-organize via STDP (Eguchi et al., 2014)
  406. Simulation studies on mechanisms of levetiracetam-mediated inhibition of IK(DR) (Huang et al. 2009)
  407. Simulation system of spinal cord motor nuclei and assoc. nerves and muscles (Cisi and Kohn 2008)
  408. Simulations of oscillations in piriform cortex (Wilson & Bower 1992)
  409. Single E-I oscillating network with amplitude modulation (Avella Gonzalez et al. 2012)
  410. Single Trial Sequence learning: a spiking neurons model based on hippocampus (Coppolino et al 2021)
  411. Sleep-wake transitions in corticothalamic system (Bazhenov et al 2002)
  412. Slow wave propagation in the guinea-pig gastric antrum (Hirst et al. 2006, Edwards and Hirst 2006)
  413. Small world networks of Type I and Type II Excitable Neurons (Bogaard et al. 2009)
  414. Software for teaching neurophysiology of neuronal circuits (Grisham et al. 2008)
  415. Sparse connectivity is required for decorrelation, pattern separation (Cayco-Gajic et al 2017)
  416. Spike burst-pause dynamics of Purkinje cells regulate sensorimotor adaptation (Luque et al 2019)
  417. Spike exchange methods for a Blue Gene/P supercomputer (Hines et al., 2011)
  418. Spike-Timing-Based Computation in Sound Localization (Goodman and Brette 2010)
  419. Spikes,synchrony,and attentive learning by laminar thalamocort. circuits (Grossberg & Versace 2007)
  420. Spiking GridPlaceMap model (Pilly & Grossberg, PLoS One, 2013)
  421. Spiking neuron model of the basal ganglia (Humphries et al 2006)
  422. Spinal circuits controlling limb coordination and gaits in quadrupeds (Danner et al 2017)
  423. Spinal Dorsal Horn Network Model (Medlock et al 2022)
  424. Spontaneous weakly correlated excitation and inhibition (Tan et al. 2013)
  425. Stability of complex spike timing-dependent plasticity in cerebellar learning (Roberts 2007)
  426. Stable propagation of synchronous spiking in cortical neural networks (Diesmann et al 1999)
  427. State dependent drug binding to sodium channels in the dentate gyrus (Thomas & Petrou 2013)
  428. State-dependent rhythmogenesis in a half-center locomotor CPG (Ausborn et al 2017)
  429. Statistics of symmetry measure for networks of neurons (Esposito et al. 2014)
  430. Status epilepticus alters dentate basket cell tonic inhibition (Yu J et al 2013)
  431. STDP allows fast rate-modulated coding with Poisson-like spike trains (Gilson et al. 2011)
  432. STDP promotes synchrony of inhibitory networks in the presence of heterogeneity (Talathi et al 2008)
  433. Stochastic and periodic inputs tune ongoing oscillations (Hutt et al. 2016)
  434. Stoney vs Histed: Quantifying spatial effects of intracortical microstims (Kumaravelu et al 2022)
  435. Storing serial order in intrinsic excitability: a working memory model (Conde-Sousa & Aguiar 2013)
  436. Striatal dopamine ramping: an explanation by reinforcement learning with decay (Morita & Kato, 2014)
  437. Striatal GABAergic microcircuit, dopamine-modulated cell assemblies (Humphries et al. 2009)
  438. Striatal GABAergic microcircuit, spatial scales of dynamics (Humphries et al, 2010)
  439. Striatal NN model of MSNs and FSIs investigated effects of dopamine depletion (Damodaran et al 2015)
  440. Structure-dynamics relationships in bursting neuronal networks revealed (Mäki-Marttunen et al. 2013)
  441. Studies of stimulus parameters for seizure disruption using NN simulations (Anderson et al. 2007)
  442. Study of augmented Rubin and Terman 2004 deep brain stim. model in Parkinsons (Pascual et al. 2006)
  443. Subiculum network model with dynamic chloride/potassium homeostasis (Buchin et al 2016)
  444. Subthreshold conductances regulate theta-frequency LFPs and spike phase (Sinha and Narayanan, 2015)
  445. Surround Suppression in V1 via Withdraw of Balanced Local Excitation in V1 (Shushruth 2012)
  446. Syn Plasticity Regulation + Information Processing in Neuron-Astrocyte Networks (Vuillaume et al 21)
  447. Synaptic Impairment, Robustness of Excitatory NNs w/ Different Topologies (Mirzakhalili et al 2017)
  448. Synaptic information transfer in computer models of neocortical columns (Neymotin et al. 2010)
  449. Synaptic plasticity can produce and enhance direction selectivity (Carver et al, 2008)
  450. Synaptic scaling balances learning in a spiking model of neocortex (Rowan & Neymotin 2013)
  451. Synchronicity of fast-spiking interneurons balances medium-spiny neurons (Damodaran et al. 2014)
  452. Synchronization by D4 dopamine receptor-mediated phospholipid methylation (Kuznetsova, Deth 2008)
  453. Synchrony by synapse location (McTavish et al. 2012)
  454. Systematic integration of data into multi-scale models of mouse primary V1 (Billeh et al 2020)
  455. Temporal integration by stochastic recurrent network (Okamoto et al. 2007)
  456. Thalamic network model of deep brain stimulation in essential tremor (Birdno et al. 2012)
  457. Thalamic quiescence of spike and wave seizures (Lytton et al 1997)
  458. Thalamic Reticular Network (Destexhe et al 1994)
  459. Thalamic transformation of pallidal input (Hadipour-Niktarash 2006)
  460. Thalamo-cortical microcircuit (TCM) (AmirAli Farokhniaee and Madeleine M. Lowery 2021)
  461. Thalamocortical and Thalamic Reticular Network (Destexhe et al 1996)
  462. Thalamocortical augmenting response (Bazhenov et al 1998)
  463. Thalamocortical control of propofol phase-amplitude coupling (Soplata et al 2017)
  464. Thalamocortical sleep model (Fink et. al., 2024, and Krishnan et al., 2016)
  465. The activity phase of postsynaptic neurons (Bose et al 2004)
  466. The microcircuits of striatum in silico (Hjorth et al 2020)
  467. The neocortical microcircuit collaboration portal (Markram et al. 2015)
  468. The origin of different spike and wave-like events (Hall et al 2017)
  469. The virtual slice setup (Lytton et al. 2008)
  470. Theory of sequence memory in neocortex (Hawkins & Ahmad 2016)
  471. Theta-gamma phase amplitude coupling in a hippocampal CA1 microcircuit (Ponzi et al. 2023)
  472. Tonic-clonic transitions in a seizure simulation (Lytton and Omurtag 2007)
  473. Towards a virtual C. elegans (Palyanov et al. 2012)
  474. Translating network models to parallel hardware in NEURON (Hines and Carnevale 2008)
  475. Turtle visual cortex model (Nenadic et al. 2003, Wang et al. 2005, Wang et al. 2006)
  476. Two-cell inhibitory network bursting dynamics captured in a one-dimensional map (Matveev et al 2007)
  477. Unbalanced peptidergic inhibition in superficial cortex underlies seizure activity (Hall et al 2015)
  478. Understanding odor information segregation in the olfactory bulb by MC/TCs (Polese et al. 2014)
  479. Universal feature of developing networks (Tabak et al 2010)
  480. Updated Tritonia Swim CPG (Calin-Jagemann et al. 2007)
  481. Vertical System (VS) tangential cells network model (Trousdale et al. 2014)
  482. Vestibulo-Ocular Reflex model in Matlab (Clopath at al. 2014)
  483. Vibration-sensitive Honeybee interneurons (Ai et al 2017)
  484. Virtual Retina: biological retina simulator, with contrast gain control (Wohrer and Kornprobst 2009)
  485. Visual physiology of the layer 4 cortical circuit in silico (Arkhipov et al 2018)
  486. Working memory circuit with branched dendrites (Morita 2008)
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